RLG00000029115

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000404
Physical Location & Seq
Reverse (-)
33222986 .. 33228932
5947 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029115

Sequence Viewer

Length: 1014 bp
ATGGCAACTAGACAAGATGAAGGAAACATAATAAAGCTAGTCTACAAGGCATCAGTTTCAGGGTGCGTATCAACCTTAAAAGAATTGATCGAAACAAACCCACTTATTCTTAGAAAACTTTCTTTGACTGCATTCACTGAAACTCCTTTGCATGTATCTGCTTTGCTTGGCCACCATGATTTTACCATAACCCTTCTCACTCATAATCCGATCCTGGCGAAGGAGTTGGACTCTTTCAGACGCTCACCTCTCCACTTGGCTTCTGCCGAGGGCCACGAGGAGATTGTTCAAGCTTTGTTACATACAGATGTCGATGTGTGCTTGTTTCATGATCAAGATGGCAGAATTCCGCTTCACTATTCAGCCATGAGAGGACGACTTGAGGTCCTCAAGAAATTAATACAAGCAAAGCCAGAATCCATTTTTGTTCTGGTTCTGAACAGATCAAGAGAAACAGTTCTGCATTTGTGTGTTAAATATAATCAACTGGAGTGCTTGAAACTATTGGTGGAACAAGTGGCTGAGCAAAGATCGGAGTTCCTCAACTCAAAAGACACTGTTGGTGGCCAGACCATCCTGCACTTAGCTTTGGTGCTGAAGCAAACTGAGACAATAAGATACCTGCTTTCTATACCTATTATACGAGAAGAAGCAAATAATCTGATCATGTCTTATGTCTTGGAGCACAACTCAGGAGATTTCAGCAATCTTGAACTTCAACAAATTGTGATTGGCCACAACTACGACCACCACCATCAGCAACCATTGTCACCTGTACCACCAGGAACGACTACTAATGTTCTTCACAACAATGCAGTGGAAAAAGTGTCAAAGGCAAGGGGAGAGCTGGATTACCTTGTTGTTGACATGCCCCCTGGAGCTGGTAATGAGCTGGTAGTTCCATTGACTGCTGTTGTTATTGTTACCACACCTCAAAAGCTACCATTTATTGATGTCGTAAAAGGAGTTCGCATGTTTTCAAAGTTGAAGGTGCCATGTGTTGCTGTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

338

Amino Acids

37.61

Weight (kDa)

6.49

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 106 4e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 84 - 134 1.2e-09 Ankyrin repeats (many copies)
Ank_2 PF12796 110 - 173 2.3e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 149 - 210 2.1e-08 Ankyrin repeats (3 copies)
ParA PF10609 280 - 336 1.5e-13 NUBPL iron-transfer P-loop NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 991
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 3 cut(s) 169, 565, 733
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 2 cut(s) 777, 1008
AfiI CCNNNNNNNGG 2 cut(s) 220, 881
AgsI TTSAA 6 cut(s) 290, 499, 713, 719, 981, 988
AhdI GACNNNNNGTC 1 cut(s) 383
AjnI CCWGG 3 cut(s) 213, 781, 874
AluBI AGCT 7 cut(s) 37, 293, 587, 847, 881, 892, 940
AluI AGCT 7 cut(s) 37, 293, 587, 847, 881, 892, 940
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 1 cut(s) 205
AoxI GGCC 4 cut(s) 169, 271, 565, 733
ApoI RAATTY 1 cut(s) 345
AseI ATTAAT 1 cut(s) 398
Asp700I GAANNNNTTC 2 cut(s) 118, 456
AspS9I GGNCC 2 cut(s) 271, 385
AsuHPI GGTGA 2 cut(s) 237, 762
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 3 cut(s) 171, 567, 735
BanI GGYRCC 1 cut(s) 991
BauI CACGAG 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 687
BccI CCATC 3 cut(s) 332, 581, 762
BciT130I CCWGG 3 cut(s) 215, 783, 876
BclI TGATCA 2 cut(s) 331, 663
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 9, 38
BfuAI ACCTGC 1 cut(s) 630
BlpI GCTNAGC 1 cut(s) 522
Bme1390I CCNGG 3 cut(s) 215, 783, 876
Bme18I GGWCC 1 cut(s) 385
BmeRI GACNNNNNGTC 1 cut(s) 383
BmgT120I GGNCC 2 cut(s) 271, 385
BmiI GGNNCC 1 cut(s) 993
BmrFI CCNGG 3 cut(s) 215, 783, 876
BmsI GCATC 1 cut(s) 59
BplI GAGNNNNNCTC 4 cut(s) 215, 247, 674, 706
BpmI CTGGAG 2 cut(s) 509, 897
Bpu1102I GCTNAGC 1 cut(s) 522
BpuEI CTTGAG 2 cut(s) 374, 401
BsaJI CCNNGG 2 cut(s) 267, 874
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 881
Bse1I ACTGG 1 cut(s) 492
BseBI CCWGG 3 cut(s) 215, 783, 876
BseDI CCNNGG 2 cut(s) 267, 874
BseGI GGATG 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 220, 881
BseMII CTCAG 3 cut(s) 513, 597, 705
BseNI ACTGG 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 4 cut(s) 171, 273, 567, 735
BshNI GGYRCC 1 cut(s) 991
BsiHKAI GWGCWC 1 cut(s) 687
BslI CCNNNNNNNGG 2 cut(s) 220, 881
BsmAI GTCTC 1 cut(s) 602
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 4 cut(s) 171, 273, 567, 735
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 6 cut(s) 87, 210, 331, 443, 530, 663
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 1 cut(s) 350
BspANI GGCC 4 cut(s) 171, 273, 567, 735
BspCNI CTCAG 3 cut(s) 514, 598, 704
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 993
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 991
BsrI ACTGG 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 267, 874
BssMI GATC 6 cut(s) 87, 210, 331, 443, 530, 663
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 3 cut(s) 215, 783, 876
Bst4CI ACNGT 2 cut(s) 457, 559
BstDEI CTNAG 5 cut(s) 110, 522, 583, 606, 691
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 573
BstKTI GATC 6 cut(s) 90, 213, 334, 446, 533, 666
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 6 cut(s) 87, 210, 331, 443, 530, 663
BstNI CCWGG 3 cut(s) 215, 783, 876
BstNSI RCATGY 3 cut(s) 155, 871, 976
BstSCI CCNGG 3 cut(s) 213, 781, 874
BsuRI GGCC 4 cut(s) 171, 273, 567, 735
BtsCI GGATG 1 cut(s) 573
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 3 cut(s) 135, 555, 822
BveI ACCTGC 1 cut(s) 630
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 271, 385
CseI GACGC 1 cut(s) 249
Csp6I GTAC 2 cut(s) 776, 1007
CviAII CATG 8 cut(s) 152, 176, 329, 367, 667, 868, 973, 996
CviQI GTAC 2 cut(s) 776, 1007
DdeI CTNAG 5 cut(s) 110, 522, 583, 606, 691
DpnI GATC 6 cut(s) 89, 212, 333, 445, 532, 665
DpnII GATC 6 cut(s) 87, 210, 331, 443, 530, 663
DriI GACNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 3 cut(s) 169, 565, 733
Eam1105I GACNNNNNGTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 617
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 3 cut(s) 213, 781, 874
FaeI CATG 8 cut(s) 155, 179, 332, 370, 670, 871, 976, 999
FatI CATG 8 cut(s) 151, 175, 328, 366, 666, 867, 972, 995
FbaI TGATCA 2 cut(s) 331, 663
FblI GTMKAC 1 cut(s) 42
FokI GGATG 1 cut(s) 560
FspBI CTAG 2 cut(s) 9, 38
GsuI CTGGAG 2 cut(s) 509, 897
HaeIII GGCC 4 cut(s) 171, 273, 567, 735
HgaI GACGC 1 cut(s) 249
Hin1II CATG 8 cut(s) 155, 179, 332, 370, 670, 871, 976, 999
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 230, 416
HphI GGTGA 2 cut(s) 237, 762
Hpy166II GTNNAC 2 cut(s) 43, 865
Hpy188I TCNGA 5 cut(s) 210, 239, 438, 535, 663
Hpy188III TCNNGA 6 cut(s) 329, 335, 391, 447, 693, 710
Hpy8I GTNNAC 2 cut(s) 43, 865
HpyAV CCTTC 4 cut(s) 14, 203, 214, 982
HpyCH4III ACNGT 2 cut(s) 457, 559
HpyCH4V TGCA 5 cut(s) 131, 151, 463, 580, 815
HpyF3I CTNAG 5 cut(s) 110, 522, 583, 606, 691
Hsp92II CATG 8 cut(s) 155, 179, 332, 370, 670, 871, 976, 999
Ksp22I TGATCA 2 cut(s) 331, 663
Kzo9I GATC 6 cut(s) 87, 210, 331, 443, 530, 663
LmnI GCTCC 2 cut(s) 682, 878
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 9, 38
MaeIII GTNAC 3 cut(s) 297, 768, 922
MalI GATC 6 cut(s) 89, 212, 333, 445, 532, 665
MboI GATC 6 cut(s) 87, 210, 331, 443, 530, 663
MboII GAAGA 2 cut(s) 659, 794
MhlI GDGCHC 1 cut(s) 687
MlsI TGGCCA 3 cut(s) 171, 567, 735
MluCI AATT 4 cut(s) 83, 345, 395, 723
MluNI TGGCCA 3 cut(s) 171, 567, 735
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 8 cut(s) 258, 262, 271, 365, 376, 398, 551, 942
Mox20I TGGCCA 3 cut(s) 171, 567, 735
MroXI GAANNNNTTC 2 cut(s) 118, 456
MscI TGGCCA 3 cut(s) 171, 567, 735
MseI TTAA 4 cut(s) 77, 398, 474, 1012
MslI CAYNNNNRTG 3 cut(s) 306, 468, 810
Msp20I TGGCCA 3 cut(s) 171, 567, 735
MspR9I CCNGG 3 cut(s) 215, 783, 876
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 3 cut(s) 215, 783, 876
NdeII GATC 6 cut(s) 87, 210, 331, 443, 530, 663
NlaIII CATG 8 cut(s) 155, 179, 332, 370, 670, 871, 976, 999
NlaIV GGNNCC 1 cut(s) 993
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 768
NspI RCATGY 3 cut(s) 155, 871, 976
PagI TCATGA 1 cut(s) 328
PctI GAATGC 1 cut(s) 131
PdmI GAANNNNTTC 2 cut(s) 118, 456
PfeI GAWTC 1 cut(s) 416
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 385
PshBI ATTAAT 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 213, 781, 874
PspGI CCWGG 3 cut(s) 213, 781, 874
PspN4I GGNNCC 1 cut(s) 993
PspPI GGNCC 2 cut(s) 271, 385
PspPPI RGGWCCY 1 cut(s) 385
PsrI GAACNNNNNNTAC 2 cut(s) 951, 983
RsaI GTAC 2 cut(s) 777, 1008
RsaNI GTAC 2 cut(s) 776, 1007
RseI CAYNNNNRTG 3 cut(s) 306, 468, 810
SaqAI TTAA 4 cut(s) 77, 398, 474, 1012
Sau3AI GATC 6 cut(s) 87, 210, 331, 443, 530, 663
Sau96I GGNCC 2 cut(s) 271, 385
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 3 cut(s) 215, 783, 876
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 1 cut(s) 59
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 3 cut(s) 306, 468, 810
SmlI CTYRAG 2 cut(s) 380, 389
SmoI CTYRAG 2 cut(s) 380, 389
Sse9I AATT 4 cut(s) 83, 345, 395, 723
SsiI CCGC 1 cut(s) 350
SspMI CTAG 2 cut(s) 9, 38
StyD4I CCNGG 3 cut(s) 213, 781, 874
TaaI ACNGT 2 cut(s) 457, 559
TaqI TCGA 2 cut(s) 90, 312
TasI AATT 4 cut(s) 83, 345, 395, 723
TatI WGTACW 1 cut(s) 1006
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 4 cut(s) 77, 398, 474, 1012
Tru9I TTAA 4 cut(s) 77, 398, 474, 1012
TscAI CASTG 3 cut(s) 142, 562, 822
TseFI GTSAC 1 cut(s) 768
Tsp45I GTSAC 1 cut(s) 768
TspDTI ATGAA 2 cut(s) 33, 317
TspRI CASTG 3 cut(s) 142, 562, 822
VpaK11BI GGWCC 1 cut(s) 385
VspI ATTAAT 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 1 cut(s) 345
XceI RCATGY 3 cut(s) 155, 871, 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 2 cut(s) 118, 456
XspI CTAG 2 cut(s) 9, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.