Rmu_sc0005193.1_g000002

Ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005193.1
Physical Location & Seq
Forward (+)
3836 .. 4189
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005193.1_g000002.1.cds

Sequence Viewer

Length: 354 bp
atgttgatggttgtcgctaccatgatatcaaccatgactttccaagtcaacccaccaggtggtgtttggcaagataatgtcatatcatttagcattgaagaaagcaattattgttcaacagaagacccttgctatcctggaactgcaatgttgggagatgtgtgggaacccgacatgcgggaatttattaagtacaacaccatctcttttgttgcttctctcagtgttaccgtgtttcttatcagcggctttcctctaacaaatcggatatgtatatggatcttatcaatggctatgtgcatcactatcactttcactgctcttacttacctaactggtgttgacttgtgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.03

Weight (kDa)

4.05

Isoelectric Point (pI)

25.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 59
AciI CCGC 2 cut(s) 178, 246
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 59, 177
AgsI TTSAA 2 cut(s) 98, 117
AjnI CCWGG 2 cut(s) 55, 136
AlwI GGATC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 129
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 57, 138
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 57, 138
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 2 cut(s) 57, 138
BmsI GCATC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 177
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 57, 138
BseLI CCNNNNNNNGG 2 cut(s) 59, 177
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 59, 177
Bsp143I GATC 1 cut(s) 279
BspACI CCGC 2 cut(s) 178, 246
BspCNI CTCAG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 340
BssMI GATC 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 57, 138
Bst4CI ACNGT 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 221
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstNI CCWGG 2 cut(s) 57, 138
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 55, 136
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 229, 315
CsiI ACCWGGT 1 cut(s) 55
Csp6I GTAC 1 cut(s) 193
CviAII CATG 3 cut(s) 22, 34, 175
CviJI RGCY 2 cut(s) 249, 293
CviKI_1 RGCY 2 cut(s) 249, 293
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
DraIII CACNNNGTG 1 cut(s) 59
Eco32I GATATC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 55, 136
EcoRV GATATC 1 cut(s) 27
FaeI CATG 3 cut(s) 25, 37, 178
FaiI YATR 8 cut(s) 23, 35, 83, 176, 271, 275, 277, 296
FatI CATG 3 cut(s) 21, 33, 174
FauI CCCGC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 247
Hin1II CATG 3 cut(s) 25, 37, 178
HincII GTYRAC 2 cut(s) 49, 343
HindII GTYRAC 2 cut(s) 49, 343
Hpy166II GTNNAC 2 cut(s) 49, 343
Hpy188I TCNGA 1 cut(s) 267
Hpy8I GTNNAC 2 cut(s) 49, 343
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 146, 300
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 3 cut(s) 25, 37, 178
Kzo9I GATC 1 cut(s) 279
LpnPI CCDG 5 cut(s) 42, 69, 123, 150, 321
LweI GCATC 1 cut(s) 309
MabI ACCWGGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 2 cut(s) 110, 134
MflI RGATCY 1 cut(s) 279
MluCI AATT 2 cut(s) 106, 182
MnlI CCTC 1 cut(s) 264
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 57, 138
MvaI CCWGG 2 cut(s) 57, 138
NdeII GATC 1 cut(s) 279
NlaIII CATG 3 cut(s) 25, 37, 178
NlaIV GGNNCC 1 cut(s) 168
NspI RCATGY 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 55, 136
PspGI CCWGG 2 cut(s) 55, 136
PspN4I GGNNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 279
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 57, 138
SetI ASST 2 cut(s) 61, 333
SexAI ACCWGGT 1 cut(s) 55
SfaNI GCATC 1 cut(s) 309
Sse9I AATT 2 cut(s) 106, 182
SsiI CCGC 2 cut(s) 178, 246
StyD4I CCNGG 2 cut(s) 55, 136
TaaI ACNGT 1 cut(s) 232
TasI AATT 2 cut(s) 106, 182
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 229, 322
TspRI CASTG 2 cut(s) 229, 322
Van91I CCANNNNNTGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.