Prupe.3G155100_v2.0.a1

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000404
Physical Location & Seq
Forward (+)
17206935 .. 17208181
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G155100.1

Sequence Viewer

Length: 333 bp
ATGGATATAACATTCAATACCGTCTCATTCATTGCTTCTCTCGGTGTCACCCTTTTGCTTGTTGGTGGATTTCCCCTCCGGAATCGTGTAATTATGTGGCTTTTATCAATGGCCATGTGTCTCACTCTCACTTTTATGGCACTCACCTATATGTTGGCTCTCATCTTAGTGTTCCCTGATATTGAAATTTACAAATCATATGAAAAGATATACTCTATATTTGCTCTCACCTTAGTGCTTTGGGCTACATTGCTTGGGATCATAGCTGCAATCCACACCATTCGTCTTCTCATTTGTGAAAGAAATGAGAAGACAGAAGAGAAGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

111

Amino Acids

12.57

Weight (kDa)

6.57

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 78
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 186
AgsI TTSAA 2 cut(s) 16, 185
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw26I GTCTC 2 cut(s) 28, 125
AlwI GGATC 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 40, 136, 220
BalI TGGCCA 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 278, 317
BbvI GCAGC 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 28, 125
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BpiI GAAGAC 2 cut(s) 278, 317
BsaWI WCCGGW 1 cut(s) 78
Bse3DI GCAATG 2 cut(s) 30, 248
BseAI TCCGGA 1 cut(s) 78
BseMI GCAATG 2 cut(s) 30, 248
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 28, 125
BsmBI CGTCTC 1 cut(s) 28
BsnI GGCC 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 1 cut(s) 258
BspANI GGCC 1 cut(s) 113
BspEI TCCGGA 1 cut(s) 78
BspPI GGATC 1 cut(s) 266
BsrDI GCAATG 2 cut(s) 30, 248
BssMI GATC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 166, 232
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 28, 125
BstMBI GATC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 253
BstV2I GAAGAC 2 cut(s) 278, 317
BsuRI GGCC 1 cut(s) 113
CviAII CATG 1 cut(s) 115
CviJI RGCY 5 cut(s) 100, 113, 158, 245, 266
CviKI_1 RGCY 5 cut(s) 100, 113, 158, 245, 266
DdeI CTNAG 2 cut(s) 166, 232
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 1 cut(s) 118
FatI CATG 1 cut(s) 114
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 79
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 79
HphI GGTGA 3 cut(s) 40, 136, 220
Hpy188III TCNNGA 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 166, 232
Hsp92II CATG 1 cut(s) 118
Kpn2I TCCGGA 1 cut(s) 78
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 2 cut(s) 92, 189
Lsp1109I GCAGC 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 3 cut(s) 278, 322, 329
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 2 cut(s) 90, 186
MluNI TGGCCA 1 cut(s) 113
MnlI CCTC 1 cut(s) 86
Mox20I TGGCCA 1 cut(s) 113
MroI TCCGGA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 113
MslI CAYNNNNRTG 4 cut(s) 134, 149, 167, 233
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 1 cut(s) 79
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 46
OliI CACNNNNGTG 1 cut(s) 233
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 268
RseI CAYNNNNRTG 4 cut(s) 134, 149, 167, 233
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 258
SetI ASST 3 cut(s) 149, 233, 268
SgeI CNNG 7 cut(s) 53, 71, 91, 98, 127, 188, 266
SmiMI CAYNNNNRTG 4 cut(s) 134, 149, 167, 233
Sse9I AATT 2 cut(s) 90, 186
TaaI ACNGT 1 cut(s) 22
TasI AATT 2 cut(s) 90, 186
TfiI GAWTC 1 cut(s) 82
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 19, 216
XapI RAATTY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.