RchiOBHm_Chr1g0342341

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000404
Physical Location & Seq
Reverse (-)
34258403 .. 34259050
648 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56897

Sequence Viewer

Length: 648 bp
ATGGCTACTAGACAAGATGAAGGAGACGCAATAGAGCTAGTCTACAAGGCATCAGTTGCGGGGTGCGTATCTACCTTAAACAAATTGATCGAAACAAGCCCACTCATTCTTAGAAAGTTTTCTTTGACTACTTTTACTGAAACTCCCTTGCATGTATCTGCTTTGCCCGGCCACCATGACTTTACCAGAACCCTTCTCACTCATAATCCCAACCTCGCGAAGGAGTTGGACTCTTACAGACGCTCATCTCTCCACTTGGCTTCTGCCGAGGGCCACGAGGAGATCGTTCAAGTTTTGTTACATGCAGATCATGCCGATGTCTGCTTGTATCATGATCAGGATGGCAGAATTCCGCTTCACTATTCAGCCATGAGAGGACGACTTGAGGTCCTCAAGAAGTTGATACGAGCAAAGCCAGAGTCCATATTTGTTTCGGTTCTGAATAGATCAAGAGAAACGGCTTTGCACTTGTGTGTTAAATATAATCAATTGGAGTGCTTGAAACTGTTAGTCGAACATGTGGGTGAACAAAAATCAGAATTCCTCAACTCAAAAGACACTGTTGGGGGCCGGACTATCCTGCACCTAGCTTTGGTTCTGAAGCAAACTGAGGGTCTGAGGTATGTAATATATGGAGAACTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

215

Amino Acids

24.21

Weight (kDa)

6.89

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 20 - 107 4.2e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 84 - 135 3.9e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 111 - 176 6.2e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 119 - 211 2.7e-12 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 218
AciI CCGC 2 cut(s) 59, 353
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 2 cut(s) 348, 539
AcuI CTGAAG 1 cut(s) 620
AfiI CCNNNNNNNGG 2 cut(s) 220, 592
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 2 cut(s) 290, 502
AhdI GACNNNNNGTC 1 cut(s) 386
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 2 cut(s) 37, 590
AluI AGCT 2 cut(s) 37, 590
Alw26I GTCTC 1 cut(s) 18
AoxI GGCC 3 cut(s) 169, 271, 568
ApoI RAATTY 2 cut(s) 348, 539
ArsI GACNNNNNNTTYG 4 cut(s) 404, 436, 598, 630
Asp700I GAANNNNTTC 1 cut(s) 118
AspS9I GGNCC 3 cut(s) 271, 388, 568
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 536
AvaII GGWCC 1 cut(s) 388
BauI CACGAG 1 cut(s) 275
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 474
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 4 cut(s) 9, 38, 587, 646
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 388
BmeRI GACNNNNNGTC 1 cut(s) 386
BmgT120I GGNCC 3 cut(s) 271, 388, 568
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpuEI CTTGAG 2 cut(s) 377, 404
BpuMI CCSGG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 592
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 220, 592
BseMII CTCAG 2 cut(s) 600, 608
BseRI GAGGAG 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 3 cut(s) 171, 273, 570
BsiSI CCGG 2 cut(s) 168, 571
BslI CCNNNNNNNGG 2 cut(s) 220, 592
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 3 cut(s) 171, 273, 570
Bsp143I GATC 5 cut(s) 87, 282, 307, 334, 446
Bsp68I TCGCGA 1 cut(s) 218
BspACI CCGC 2 cut(s) 59, 353
BspANI GGCC 3 cut(s) 171, 273, 570
BspCNI CTCAG 2 cut(s) 601, 609
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 569
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 5 cut(s) 87, 282, 307, 334, 446
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 507, 562
BstAPI GCANNNNNTGC 2 cut(s) 56, 311
BstDEI CTNAG 3 cut(s) 110, 609, 617
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 218
BstKTI GATC 5 cut(s) 90, 285, 310, 337, 449
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 5 cut(s) 87, 282, 307, 334, 446
BstMWI GCNNNNNNNGC 2 cut(s) 56, 311
BstNSI RCATGY 3 cut(s) 155, 305, 521
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 218
BsuRI GGCC 3 cut(s) 171, 273, 570
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 558
BtuMI TCGCGA 1 cut(s) 218
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 271, 388, 568
CseI GACGC 2 cut(s) 35, 249
CviAII CATG 7 cut(s) 152, 176, 302, 311, 332, 370, 518
DdeI CTNAG 3 cut(s) 110, 609, 617
DpnI GATC 5 cut(s) 89, 284, 309, 336, 448
DpnII GATC 5 cut(s) 87, 282, 307, 334, 446
DriI GACNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 169
Eam1105I GACNNNNNGTC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 620
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 388
EcoRI GAATTC 2 cut(s) 348, 539
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 7 cut(s) 155, 179, 305, 314, 335, 373, 521
FatI CATG 7 cut(s) 151, 175, 301, 310, 331, 369, 517
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 42
FokI GGATG 1 cut(s) 353
FspBI CTAG 4 cut(s) 9, 38, 587, 646
HaeIII GGCC 3 cut(s) 171, 273, 570
HapII CCGG 2 cut(s) 168, 571
HgaI GACGC 2 cut(s) 35, 249
Hin1II CATG 7 cut(s) 155, 179, 305, 314, 335, 373, 521
HinfI GANTC 2 cut(s) 230, 419
HpaII CCGG 2 cut(s) 168, 571
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 2 cut(s) 43, 527
Hpy188I TCNGA 4 cut(s) 441, 538, 600, 618
Hpy188III TCNNGA 5 cut(s) 217, 332, 338, 394, 450
Hpy8I GTNNAC 2 cut(s) 43, 527
HpyAV CCTTC 3 cut(s) 14, 203, 214
HpyCH4III ACNGT 2 cut(s) 507, 562
HpyCH4V TGCA 4 cut(s) 151, 305, 466, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 311
HpyF3I CTNAG 3 cut(s) 110, 609, 617
Hsp92II CATG 7 cut(s) 155, 179, 305, 314, 335, 373, 521
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 5 cut(s) 87, 282, 307, 334, 446
LpnPI CCDG 6 cut(s) 181, 199, 323, 429, 584, 593
LweI GCATC 1 cut(s) 59
MaeI CTAG 4 cut(s) 9, 38, 587, 646
MaeIII GTNAC 1 cut(s) 297
MalI GATC 5 cut(s) 89, 284, 309, 336, 448
MboI GATC 5 cut(s) 87, 282, 307, 334, 446
MfeI CAATTG 1 cut(s) 488
MluCI AATT 4 cut(s) 83, 348, 488, 539
MlyI GAGTC 2 cut(s) 224, 428
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 9 cut(s) 224, 262, 271, 368, 379, 401, 554, 604, 612
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 3 cut(s) 77, 477, 642
MslI CAYNNNNRTG 3 cut(s) 315, 471, 522
MspI CCGG 2 cut(s) 168, 571
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 488
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 56, 311
NciI CCSGG 1 cut(s) 168
NdeII GATC 5 cut(s) 87, 282, 307, 334, 446
NlaIII CATG 7 cut(s) 155, 179, 305, 314, 335, 373, 521
NlaIV GGNNCC 1 cut(s) 569
NmeAIII GCCGAG 1 cut(s) 292
NruI TCGCGA 1 cut(s) 218
NspI RCATGY 3 cut(s) 155, 305, 521
OliI CACNNNNGTG 1 cut(s) 471
PagI TCATGA 1 cut(s) 331
PciI ACATGT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 118
PleI GAGTC 2 cut(s) 224, 427
PpsI GAGTC 2 cut(s) 224, 427
PpuMI RGGWCCY 1 cut(s) 388
PscI ACATGT 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 569
PspPI GGNCC 3 cut(s) 271, 388, 568
PspPPI RGGWCCY 1 cut(s) 388
RruI TCGCGA 1 cut(s) 218
RseI CAYNNNNRTG 3 cut(s) 315, 471, 522
SaqAI TTAA 3 cut(s) 77, 477, 642
Sau3AI GATC 5 cut(s) 87, 282, 307, 334, 446
Sau96I GGNCC 3 cut(s) 271, 388, 568
SchI GAGTC 2 cut(s) 224, 428
ScrFI CCNGG 1 cut(s) 168
SetI ASST 7 cut(s) 39, 77, 216, 390, 588, 592, 623
SfaNI GCATC 1 cut(s) 59
SinI GGWCC 1 cut(s) 388
SmiMI CAYNNNNRTG 3 cut(s) 315, 471, 522
SmlI CTYRAG 2 cut(s) 383, 392
SmoI CTYRAG 2 cut(s) 383, 392
Sse9I AATT 4 cut(s) 83, 348, 488, 539
SsiI CCGC 2 cut(s) 59, 353
SspMI CTAG 4 cut(s) 9, 38, 587, 646
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 507, 562
TaqI TCGA 2 cut(s) 90, 513
TasI AATT 4 cut(s) 83, 348, 488, 539
Tru1I TTAA 3 cut(s) 77, 477, 642
Tru9I TTAA 3 cut(s) 77, 477, 642
TscAI CASTG 1 cut(s) 565
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 388
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 2 cut(s) 348, 539
XceI RCATGY 3 cut(s) 155, 305, 521
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 4 cut(s) 9, 38, 587, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.