Rw1G014560

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000404
Physical Location & Seq
Reverse (-)
32497421 .. 32499322
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014560.1

Sequence Viewer

Length: 831 bp
ATGGAGGTTAGAGATGACGACCATAAAGACGATACAACAAAAGCACTCTATGAGGCAGCAGTTGCAGGCTCAGTATCATCTTTTAAAACATTGATCCAGAAAGACCGTCTCATCCTCGACGAAGTTTCACTCACTCATTTCAGTGAAACTCCCCTCCACATCTCAGCTCTGCTCGGCAACATCGATTTCACCAAGGCTATTCTTACACATAACTGGAGACTTGCCACCGTGAGGGACTCCTTGAAACGCCTGCCGCTTCTCTTGGCAGCTGCCGAGGGCCAAAAGGAGATTGTTCAAGCTCTTCTGAAAGCCTACCCGGCCGCTTGCTTGTTTCCTGATCAGTACGGAAGAATCCCTCTTCACTATGCCGCTATGAGAGGACACGCTGAGGTCTTAGTTGAGTTGATGCACACAATGCCCAAATCAGTCATGTTAAGGGTTCTTGATAGAGGAGACACGGTTTTCCACTTATGTGTTACTTATAACCAATTAGAATGCTTGAAGCTATTGGTGAAAGATGTAGGGGACAATAGAGACCTCCTCAATGCTAGAGCTGGATGCGATGGTGGTATGACCATCCTCGAATTAGCTGTGATGCTAAGGCAAACTGAGACAATAAAATACTTGCGCTCGCTACCTGTTGTACGAGCAGAAGCAAAGAAAGATGGAAAAAAGGGAAGGAAAAGTGAAAATAAGGTGAATGAGAAATGCTATAACAGTGGGACTTGGGTGGAAGAGAAACGCGGCATGCTGATGGTTGTGGCTACCATGATCTCAACAATGACATTCCAAGCTACATTAACCCACCAGGTGGGTTCTGGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

276

Amino Acids

30.84

Weight (kDa)

8.85

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 103 6.6e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 86 - 173 1.4e-12 Ankyrin repeats (3 copies)
Ank_2 PF12796 120 - 210 3.2e-10 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AccB7I CCANNNNNTGG 1 cut(s) 811
AccII CGCG 1 cut(s) 744
AciI CCGC 4 cut(s) 254, 321, 369, 744
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 811
AfaI GTAC 2 cut(s) 344, 645
AfiI CCNNNNNNNGG 2 cut(s) 231, 811
AgsI TTSAA 3 cut(s) 244, 296, 502
AjnI CCWGG 1 cut(s) 807
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 7 cut(s) 167, 269, 299, 505, 554, 590, 794
AluI AGCT 7 cut(s) 167, 269, 299, 505, 554, 590, 794
Alw26I GTCTC 5 cut(s) 113, 211, 447, 528, 605
AlwI GGATC 1 cut(s) 88
AoxI GGCC 2 cut(s) 277, 318
ApeKI GCWGC 3 cut(s) 56, 266, 269
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 181, 523, 709
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 68, 256, 278
BccI CCATC 4 cut(s) 557, 584, 659, 748
BciT130I CCWGG 1 cut(s) 809
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 5 cut(s) 113, 211, 447, 528, 605
BfaI CTAG 1 cut(s) 549
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 745
BlsI GCNGC 7 cut(s) 58, 255, 268, 271, 322, 370, 746
Bme1390I CCNGG 2 cut(s) 317, 809
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 317, 809
BmsI GCATC 3 cut(s) 396, 548, 585
BplI GAGNNNNNCTC 2 cut(s) 525, 557
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 2 cut(s) 387, 599
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 192, 273
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 811
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 809
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 192, 273
BseGI GGATG 3 cut(s) 111, 563, 576
BseLI CCNNNNNNNGG 2 cut(s) 231, 811
BseMII CTCAG 4 cut(s) 84, 177, 378, 600
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 2 cut(s) 465, 530
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 3 cut(s) 68, 256, 278
Bsh1236I CGCG 1 cut(s) 744
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 279, 320
BshVI ATCGAT 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 3 cut(s) 248, 539, 736
BslI CCNNNNNNNGG 2 cut(s) 231, 811
BsmAI GTCTC 5 cut(s) 113, 211, 447, 528, 605
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 3 cut(s) 248, 539, 736
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 279, 320
Bso31I GGTCTC 1 cut(s) 528
Bsp143I GATC 3 cut(s) 93, 337, 771
BspACI CCGC 4 cut(s) 254, 321, 369, 744
BspANI GGCC 2 cut(s) 279, 320
BspCNI CTCAG 4 cut(s) 83, 176, 379, 601
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 744
BspPI GGATC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 528
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 192, 273
BssMI GATC 3 cut(s) 93, 337, 771
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 4 cut(s) 107, 229, 460, 719
Bst6I CTCTTC 3 cut(s) 306, 363, 729
BstAPI GCANNNNNTGC 2 cut(s) 62, 415
BstC8I GCNNGC 5 cut(s) 67, 251, 325, 632, 749
BstDEI CTNAG 6 cut(s) 70, 163, 387, 394, 599, 609
BstF5I GGATG 3 cut(s) 111, 563, 576
BstFNI CGCG 1 cut(s) 744
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 3 cut(s) 96, 340, 774
BstMAI GTCTC 5 cut(s) 113, 211, 447, 528, 605
BstMBI GATC 3 cut(s) 93, 337, 771
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 3 cut(s) 62, 317, 415
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 2 cut(s) 315, 807
BstUI CGCG 1 cut(s) 744
BstV1I GCAGC 3 cut(s) 68, 256, 278
BstZI CGGCCG 1 cut(s) 318
Bsu15I ATCGAT 1 cut(s) 183
BsuRI GGCC 2 cut(s) 279, 320
BsuTUI ATCGAT 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 576
BtsCI GGATG 3 cut(s) 111, 563, 576
BtsIMutI CAGTG 2 cut(s) 148, 724
Cac8I GCNNGC 5 cut(s) 67, 251, 325, 632, 749
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 183
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 2 cut(s) 343, 644
CviAII CATG 3 cut(s) 430, 748, 769
CviQI GTAC 2 cut(s) 343, 644
DdeI CTNAG 6 cut(s) 70, 163, 387, 394, 599, 609
DpnI GATC 3 cut(s) 95, 339, 773
DpnII GATC 3 cut(s) 93, 337, 771
DraI TTTAAA 1 cut(s) 85
DraIII CACNNNGTG 1 cut(s) 811
EaeI YGGCCR 1 cut(s) 318
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 3 cut(s) 306, 363, 729
EarI CTCTTC 3 cut(s) 306, 363, 729
EclXI CGGCCG 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 528
Eco52I CGGCCG 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 3 cut(s) 433, 751, 772
FaqI GGGAC 3 cut(s) 248, 539, 736
FatI CATG 3 cut(s) 429, 747, 768
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 745
FokI GGATG 3 cut(s) 98, 563, 570
Fsp4HI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 745
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 629
GluI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 745
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 2 cut(s) 279, 320
HapII CCGG 1 cut(s) 317
HhaI GCGC 1 cut(s) 630
Hin1II CATG 3 cut(s) 433, 751, 772
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 2 cut(s) 236, 351
HpaII CCGG 1 cut(s) 317
HphI GGTGA 3 cut(s) 181, 523, 709
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 97, 335, 443
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 672
HpyCH4III ACNGT 4 cut(s) 107, 229, 460, 719
HpyCH4V TGCA 2 cut(s) 65, 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 317, 415
HpyF3I CTNAG 6 cut(s) 70, 163, 387, 394, 599, 609
Hsp92II CATG 3 cut(s) 433, 751, 772
HspAI GCGC 1 cut(s) 628
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 3 cut(s) 93, 337, 771
LguI GCTCTTC 1 cut(s) 306
Lsp1109I GCAGC 3 cut(s) 68, 256, 278
LweI GCATC 3 cut(s) 396, 548, 585
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 475
MalI GATC 3 cut(s) 95, 339, 773
MboI GATC 3 cut(s) 93, 337, 771
MboII GAAGA 4 cut(s) 293, 350, 360, 746
MluCI AATT 2 cut(s) 488, 584
MlyI GAGTC 1 cut(s) 230
MseI TTAA 3 cut(s) 84, 434, 800
MslI CAYNNNNRTG 3 cut(s) 141, 471, 752
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 317, 809
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 1 cut(s) 744
MwoI GCNNNNNNNGC 3 cut(s) 62, 317, 415
NciI CCSGG 1 cut(s) 317
NdeII GATC 3 cut(s) 93, 337, 771
NlaIII CATG 3 cut(s) 433, 751, 772
NmeAIII GCCGAG 2 cut(s) 153, 298
NspI RCATGY 1 cut(s) 751
OliI CACNNNNGTG 1 cut(s) 471
PaeI GCATGC 1 cut(s) 751
PciSI GCTCTTC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 351
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 7 cut(s) 58, 255, 268, 271, 322, 370, 746
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspPI GGNCC 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 2 cut(s) 344, 645
RsaNI GTAC 2 cut(s) 343, 644
RseI CAYNNNNRTG 3 cut(s) 141, 471, 752
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 3 cut(s) 84, 434, 800
SatI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 745
Sau3AI GATC 3 cut(s) 93, 337, 771
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 317, 809
SexAI ACCWGGT 1 cut(s) 807
SfaNI GCATC 3 cut(s) 396, 548, 585
SmiMI CAYNNNNRTG 3 cut(s) 141, 471, 752
SphI GCATGC 1 cut(s) 751
Sse9I AATT 2 cut(s) 488, 584
SsiI CCGC 4 cut(s) 254, 321, 369, 744
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 315, 807
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 4 cut(s) 107, 229, 460, 719
TaqI TCGA 3 cut(s) 117, 183, 582
TasI AATT 2 cut(s) 488, 584
TauI GCSGC 4 cut(s) 256, 323, 371, 747
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 3 cut(s) 84, 434, 800
Tru9I TTAA 3 cut(s) 84, 434, 800
TscAI CASTG 2 cut(s) 148, 724
TseI GCWGC 3 cut(s) 56, 266, 269
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 148, 724
Van91I CCANNNNNTGG 1 cut(s) 811
XceI RCATGY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 815
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.