Rw0G009980

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00413
OG0000404
Physical Location & Seq
Forward (+)
5775 .. 7579
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009980.1

Sequence Viewer

Length: 900 bp
ATGTCTGTGCAGACCATAAAATACTTGCTTTCGCTACCTGTTGTACAAGCAGAAGCAAATGTTGTACATGGGAAGGTTTTAAACATGGTAGAAAATAGTCCAAGAGACTTCGTAAGTTTGGAAATTCAACAAGTTTTGATGGATGCTGGTATCATGAGAAATGGAAAGAATGAAAATCAGCAACAACCACCATTACTAAACAACAAATCAAAGAAAGATGGAAAAAAGGGAAGGAAAAGTGCAAAAAAGGGGAATGAGAGTGAGGATTGGGTGGAAGAGAAACGCAGTAAGCGTAGGAATTGGGTGGAAGAGAAACGTGGCATGCTGATGGTTGTGGCTACCATGATCTCAACAATGACATTCCAAGCGACAATTAACCCACCAGGTGGGTTTTGGCAAGATATGAACACCAATACGACTTTTCATGGAGTACCTGTTTGCAATATAACAAACCCTTGTGTTGTCGGAACTGCAGTATCAAGATACATACATCCAGATCACTTCGACTCCTTCCAGAATTTCAATACCGTCTGCTTCCTTTTTTCTTTGAGCATCACTCTTTTGCTTATAAGTGGATTTCCTCTCCATAGACAAGCACTTGTCTGGCTCTTGTCAATAGTGATGTGTCTCACTCTCACATTCTTGGCGCTGACCTTCAACGAAGGTGCCAAGATGGTAATACCCAAAAGTGTTAATCAGCGAGATACCAACACTATTATGGTTATTGGTTGTATAATTGCATTGAACTCATATAACTATCCTCTGATGTATCCTTTGATGGCTTCCACTCCTTATTCCTCACTATTGACAACTCTAAACTCCACATCCTTTGTAACCTGGTACATATTATCAAAACAATTCCACAAAGAAAATCATGTTGTAAAACAGAAAAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

299

Amino Acids

33.87

Weight (kDa)

9.48

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 100 - 222 2.8e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 665
AccB7I CCANNNNNTGG 1 cut(s) 386
AcsI RAATTY 3 cut(s) 123, 517, 894
AdeI CACNNNGTG 1 cut(s) 386
AfaI GTAC 4 cut(s) 45, 66, 432, 842
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 4 cut(s) 128, 523, 658, 745
AjnI CCWGG 2 cut(s) 382, 836
Alw26I GTCTC 2 cut(s) 99, 632
ApoI RAATTY 3 cut(s) 123, 517, 894
AspLEI GCGC 1 cut(s) 649
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BanI GGYRCC 1 cut(s) 665
BccI CCATC 5 cut(s) 133, 212, 322, 667, 772
BciT130I CCWGG 2 cut(s) 384, 838
BciVI GTATCC 1 cut(s) 780
BcoDI GTCTC 2 cut(s) 99, 632
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 1 cut(s) 650
BfuI GTATCC 1 cut(s) 780
Bme1390I CCNGG 2 cut(s) 384, 838
BmiI GGNNCC 1 cut(s) 667
BmrFI CCNGG 2 cut(s) 384, 838
BmsI GCATC 2 cut(s) 133, 561
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BsaXI ACNNNNNCTCC 4 cut(s) 420, 450, 491, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 386
BseBI CCWGG 2 cut(s) 384, 838
BseGI GGATG 3 cut(s) 148, 490, 824
BseLI CCNNNNNNNGG 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 665
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 2 cut(s) 99, 632
Bsp1407I TGTACA 2 cut(s) 43, 64
Bsp143I GATC 2 cut(s) 345, 496
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 667
BspMAI CTGCAG 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 665
BsrGI TGTACA 2 cut(s) 43, 64
BssMI GATC 2 cut(s) 345, 496
Bst2UI CCWGG 2 cut(s) 384, 838
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 2 cut(s) 270, 303
BstAUI TGTACA 2 cut(s) 43, 64
BstC8I GCNNGC 1 cut(s) 323
BstF5I GGATG 3 cut(s) 148, 490, 824
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 2 cut(s) 348, 499
BstMAI GTCTC 2 cut(s) 99, 632
BstMBI GATC 2 cut(s) 345, 496
BstNI CCWGG 2 cut(s) 384, 838
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 382, 836
BstSFI CTRYAG 1 cut(s) 471
BsuI GTATCC 1 cut(s) 780
BtsCI GGATG 3 cut(s) 148, 490, 824
Cac8I GCNNGC 1 cut(s) 323
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 649
CsiI ACCWGGT 2 cut(s) 382, 836
Csp6I GTAC 4 cut(s) 44, 65, 431, 841
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 7 cut(s) 68, 85, 154, 322, 343, 425, 875
CviJI RGCY 3 cut(s) 338, 607, 782
CviKI_1 RGCY 3 cut(s) 338, 607, 782
CviQI GTAC 4 cut(s) 44, 65, 431, 841
DpnI GATC 2 cut(s) 347, 498
DpnII GATC 2 cut(s) 345, 496
DraI TTTAAA 1 cut(s) 81
DraIII CACNNNGTG 1 cut(s) 386
Eam1104I CTCTTC 2 cut(s) 270, 303
EarI CTCTTC 2 cut(s) 270, 303
EcoRII CCWGG 2 cut(s) 382, 836
FaeI CATG 7 cut(s) 71, 88, 157, 325, 346, 428, 878
FatI CATG 7 cut(s) 67, 84, 153, 321, 342, 424, 874
FokI GGATG 3 cut(s) 155, 477, 811
GlaI GCGC 1 cut(s) 648
HaeII RGCGCY 1 cut(s) 650
HhaI GCGC 1 cut(s) 649
Hin1II CATG 7 cut(s) 71, 88, 157, 325, 346, 428, 878
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HinfI GANTC 1 cut(s) 506
Hpy188I TCNGA 2 cut(s) 467, 765
Hpy188III TCNNGA 4 cut(s) 154, 480, 494, 514
HpyAV CCTTC 5 cut(s) 67, 225, 520, 656, 664
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 5 cut(s) 10, 242, 441, 473, 740
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 7 cut(s) 71, 88, 157, 325, 346, 428, 878
HspAI GCGC 1 cut(s) 647
Kzo9I GATC 2 cut(s) 345, 496
LweI GCATC 2 cut(s) 133, 561
MabI ACCWGGT 2 cut(s) 382, 836
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 832
MalI GATC 2 cut(s) 347, 498
MboI GATC 2 cut(s) 345, 496
MboII GAAGA 2 cut(s) 287, 320
MluCI AATT 7 cut(s) 123, 298, 372, 517, 735, 857, 894
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 4 cut(s) 256, 591, 771, 808
MseI TTAA 3 cut(s) 80, 375, 693
MslI CAYNNNNRTG 2 cut(s) 326, 716
MspR9I CCNGG 2 cut(s) 384, 838
MvaI CCWGG 2 cut(s) 384, 838
NdeII GATC 2 cut(s) 345, 496
NlaIII CATG 7 cut(s) 71, 88, 157, 325, 346, 428, 878
NlaIV GGNNCC 1 cut(s) 667
NspI RCATGY 1 cut(s) 325
PaeI GCATGC 1 cut(s) 325
PagI TCATGA 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PflMI CCANNNNNTGG 1 cut(s) 386
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 2 cut(s) 382, 836
PspGI CCWGG 2 cut(s) 382, 836
PspN4I GGNNCC 1 cut(s) 667
PstI CTGCAG 1 cut(s) 475
RsaI GTAC 4 cut(s) 45, 66, 432, 842
RsaNI GTAC 4 cut(s) 44, 65, 431, 841
RseI CAYNNNNRTG 2 cut(s) 326, 716
SaqAI TTAA 3 cut(s) 80, 375, 693
Sau3AI GATC 2 cut(s) 345, 496
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 384, 838
SetI ASST 8 cut(s) 40, 78, 319, 388, 436, 656, 667, 839
SexAI ACCWGGT 2 cut(s) 382, 836
SfaNI GCATC 2 cut(s) 133, 561
SfcI CTRYAG 1 cut(s) 471
SmiMI CAYNNNNRTG 2 cut(s) 326, 716
SphI GCATGC 1 cut(s) 325
Sse9I AATT 7 cut(s) 123, 298, 372, 517, 735, 857, 894
StyD4I CCNGG 2 cut(s) 382, 836
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 504
TasI AATT 7 cut(s) 123, 298, 372, 517, 735, 857, 894
TatI WGTACW 2 cut(s) 43, 64
Tru1I TTAA 3 cut(s) 80, 375, 693
Tru9I TTAA 3 cut(s) 80, 375, 693
TspDTI ATGAA 3 cut(s) 186, 413, 419
Van91I CCANNNNNTGG 1 cut(s) 386
XapI RAATTY 3 cut(s) 123, 517, 894
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 2 cut(s) 390, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.