RLG00000029059

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000404
Physical Location & Seq
Forward (+)
32106407 .. 32107607
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029059

Sequence Viewer

Length: 561 bp
ATGGAGATTAGAGAAGATCACCATGAAGACGATACAACAAGAGCACTCTATGAGGTAGCAGTTGCAGGCTCATTATCATCTTTCAAAAGATTGATTCAGAAAGACCCTCTCATCCTCAACAAAGTTTCACTCACTCACTTCAGTGAAACTCCCCTCCACATCTCAGCTCTGCTCGGCCACCTTGATTTCACCAAGGCTATTCTTACTCATAACTCGAGACTTGCCACCGAGACAATAGAGACCTCCTCAATGCTGGAGCTGGATGCGATGGTGGTATATATGACCATCCTCGAATTGGCTGTGATGCTAAGGCAAATTGAGACCATAAAATACTTGCTTTCGCTACCTGTTGTACAAGCAGAAGCAAATGTTGTACATGGGAGGGTTTTAAACATGCTAGAAAACAGTCCAAGAGACTTCGTAAGTTTGGAAATTCAACAAGTTTTGATGGGTGCTGTTATCATGAGAAATAGAAAGAATGAAAATGATCAACTACTACCATTACCAACCAGCAAATCAAAGAAAGATGGAAAAAAGGGAAGGAAAAGTGCAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

187

Amino Acids

21.0

Weight (kDa)

8.0

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 19 - 114 3.2e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 2 cut(s) 354, 375
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 2 cut(s) 85, 437
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 2 cut(s) 167, 259
AluI AGCT 2 cut(s) 167, 259
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 5 cut(s) 211, 224, 233, 314, 408
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 11, 181
AvaI CYCGRG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 4 cut(s) 262, 293, 442, 521
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 5 cut(s) 211, 224, 233, 314, 408
BfaI CTAG 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 214
BmsI GCATC 2 cut(s) 253, 294
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 308
BsaI GGTCTC 2 cut(s) 233, 314
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 3 cut(s) 111, 268, 285
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 235
BshFI GGCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 5 cut(s) 211, 224, 233, 314, 408
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 2 cut(s) 233, 314
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1407I TGTACA 2 cut(s) 352, 373
Bsp143I GATC 2 cut(s) 16, 487
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 462
BspTNI GGTCTC 2 cut(s) 233, 314
BsrGI TGTACA 2 cut(s) 352, 373
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 16, 487
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 407
BstAUI TGTACA 2 cut(s) 352, 373
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 163, 308
BstF5I GGATG 3 cut(s) 111, 268, 285
BstKTI GATC 2 cut(s) 19, 490
BstMAI GTCTC 5 cut(s) 211, 224, 233, 314, 408
BstMBI GATC 2 cut(s) 16, 487
BstNSI RCATGY 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 281
BtsCI GGATG 3 cut(s) 111, 268, 285
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 67
CciI TCATGA 1 cut(s) 462
Csp6I GTAC 2 cut(s) 353, 374
CviAII CATG 4 cut(s) 23, 377, 394, 463
CviJI RGCY 6 cut(s) 69, 167, 177, 197, 259, 299
CviKI_1 RGCY 6 cut(s) 69, 167, 177, 197, 259, 299
CviQI GTAC 2 cut(s) 353, 374
DdeI CTNAG 2 cut(s) 163, 308
DpnI GATC 2 cut(s) 18, 489
DpnII GATC 2 cut(s) 16, 487
DraI TTTAAA 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 2 cut(s) 233, 314
Eco57I CTGAAG 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 4 cut(s) 26, 380, 397, 466
FatI CATG 4 cut(s) 22, 376, 393, 462
FbaI TGATCA 1 cut(s) 487
FokI GGATG 3 cut(s) 98, 272, 275
FspBI CTAG 1 cut(s) 398
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 4 cut(s) 26, 380, 397, 466
HinfI GANTC 1 cut(s) 94
HphI GGTGA 2 cut(s) 11, 181
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 216, 463
HpyAV CCTTC 1 cut(s) 534
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 2 cut(s) 65, 551
HpyF3I CTNAG 2 cut(s) 163, 308
Hsp92II CATG 4 cut(s) 26, 380, 397, 466
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 2 cut(s) 16, 487
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 51, 239, 245, 360, 523
LweI GCATC 2 cut(s) 253, 294
MaeI CTAG 1 cut(s) 398
MalI GATC 2 cut(s) 18, 489
MboI GATC 2 cut(s) 16, 487
MboII GAAGA 2 cut(s) 26, 38
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 293, 315, 432
MnlI CCTC 8 cut(s) 46, 117, 125, 164, 253, 256, 299, 375
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 1 cut(s) 141
NdeII GATC 2 cut(s) 16, 487
NlaIII CATG 4 cut(s) 26, 380, 397, 466
NmeAIII GCCGAG 1 cut(s) 153
NspI RCATGY 1 cut(s) 397
OliI CACNNNNGTG 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 214
PagI TCATGA 1 cut(s) 462
PfeI GAWTC 1 cut(s) 94
RsaI GTAC 2 cut(s) 354, 375
RsaNI GTAC 2 cut(s) 353, 374
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 2 cut(s) 16, 487
SduI GDGCHC 1 cut(s) 46
SetI ASST 7 cut(s) 57, 169, 183, 245, 261, 349, 560
SfaNI GCATC 2 cut(s) 253, 294
Sfr274I CTCGAG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 3 cut(s) 293, 315, 432
SspMI CTAG 1 cut(s) 398
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 2 cut(s) 215, 291
TasI AATT 3 cut(s) 293, 315, 432
TatI WGTACW 2 cut(s) 352, 373
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 39, 495
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 432
XceI RCATGY 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 214
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.