Prupe.3G154300_v2.0.a1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000404
Physical Location & Seq
Forward (+)
17011997 .. 17013886
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G154300.1

Sequence Viewer

Length: 948 bp
ATGACGGCAGTGGAAGAGGGTGTTGGCGGGTGGCGGTTGGTGGCAGGTATGGGGGTTTATAGTGGTGCTGAAAAAAAAGAAGGGGAAAAGGACAAAAACGTAAATGTGATACCTGCTGTGAAAGAAGAACCAAATGGCGTGATCCAGTTATATTCCTCAGAGAAAAATGCAAGAGACTCGGGCAGCCTACCTGAGCTTGATCAAATTTTGGTTGAGCCAGGTATGGAAACAAAAAGAACTACTGCCGCTGCTGTTCAGATTCAGCAGCACACAGCAATAGCAACAGCTTGGTGGCTGATAAATAGACTGGTAAATTGCTTGGAATACCCAAAAACTTGGTTGGAAGAGACACGCAGCATGCTGATGATTGTGGCAACCATGATATCGACTACAACTTTCCAAGCTGCAGTTAACCCACCTGGTGGTGTTTGGCAAGAGAATAATACAAATAGTAGCGCTAGAGGCACTACTTATTGCACCCAAAATAACATATGCTTGGCTGGAACTTCAGTGGCAGGCAGCGCCTTCCCCAAAGAATTCCTCGCGTTCGTAACATTCAATACCATCTCGTTTCTTGCTTCTCTCAGTGTCAACCTTTTGCTTGTTGGAGGATTTCCCCTCCGGAATCGCGTAATTATGTGGCTTCTATCAATGGCCATGTGTCTCACTCTCACTTCTATGGCGTTCACCTTTTTACTGGCTTCCCTGTTGGTGGTTCCAAATACTGACATCCTCGTTTCACAAGGAGTTAGATCCCGTAAATCCGCTGTGTTGGTTTGGATTGCGTTGCTTCTAACCATCGCTTTAATCCACACCATTCGCCTAATCATTTGGTTGTCAAGGAAGTTGTGGGGCAGGTTCAAGCATAAGATCCCAAAAAGCCTCAGGAAAGTGGTTGATAGTTTGGTGGATAGTTCGAGAGCACGTCACCGTACCAACAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

316

Amino Acids

34.78

Weight (kDa)

9.69

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 35, 121, 846
AccB7I CCANNNNNTGG 1 cut(s) 422
AccII CGCG 2 cut(s) 545, 630
AccIII TCCGGA 1 cut(s) 621
AciI CCGC 4 cut(s) 27, 34, 246, 765
AclWI GGATC 3 cut(s) 136, 747, 865
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 3 cut(s) 204, 536, 941
AcuI CTGAAG 1 cut(s) 492
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 934
AfeI AGCGCT 1 cut(s) 457
AfiI CCNNNNNNNGG 2 cut(s) 422, 712
AgsI TTSAA 2 cut(s) 559, 862
AjiI CACGTC 1 cut(s) 926
AjnI CCWGG 2 cut(s) 217, 418
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 3 cut(s) 196, 287, 404
AluI AGCT 3 cut(s) 196, 287, 404
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 3 cut(s) 168, 341, 668
AlwI GGATC 3 cut(s) 136, 747, 865
Ama87I CYCGRG 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 621
Aor51HI AGCGCT 1 cut(s) 457
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 6 cut(s) 183, 248, 265, 354, 404, 519
ApoI RAATTY 3 cut(s) 204, 536, 941
AspLEI GCGC 2 cut(s) 458, 524
AsuHPI GGTGA 2 cut(s) 679, 920
AvaI CYCGRG 1 cut(s) 178
AxyI CCTNAGG 1 cut(s) 884
BalI TGGCCA 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 6 cut(s) 195, 235, 277, 366, 391, 531
BccI CCATC 2 cut(s) 572, 806
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 2 cut(s) 219, 420
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 168, 341, 668
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 2 cut(s) 459, 525
BfuAI ACCTGC 3 cut(s) 35, 121, 846
BisI GCNGC 7 cut(s) 184, 246, 249, 266, 355, 405, 520
BlsI GCNGC 7 cut(s) 185, 247, 250, 267, 356, 406, 521
Bme1390I CCNGG 2 cut(s) 219, 420
BmeT110I CYCGRG 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 926
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 2 cut(s) 219, 420
Bpu10I CCTNAGC 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 621
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 712
Bse1I ACTGG 3 cut(s) 145, 312, 702
Bse21I CCTNAGG 1 cut(s) 884
BseAI TCCGGA 1 cut(s) 621
BseBI CCWGG 2 cut(s) 219, 420
BseGI GGATG 1 cut(s) 729
BseLI CCNNNNNNNGG 2 cut(s) 422, 712
BseMII CTCAG 4 cut(s) 171, 183, 598, 898
BseNI ACTGG 3 cut(s) 145, 312, 702
BseXI GCAGC 6 cut(s) 195, 235, 277, 366, 391, 531
Bsh1236I CGCG 2 cut(s) 545, 630
BshFI GGCC 1 cut(s) 656
BsiHKAI GWGCWC 1 cut(s) 925
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 622
BslI CCNNNNNNNGG 2 cut(s) 422, 712
BsmAI GTCTC 3 cut(s) 168, 341, 668
BsnI GGCC 1 cut(s) 656
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 925
Bsp13I TCCGGA 1 cut(s) 621
Bsp143I GATC 4 cut(s) 141, 199, 752, 870
BspACI CCGC 4 cut(s) 27, 34, 246, 765
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 4 cut(s) 170, 184, 597, 897
BspEI TCCGGA 1 cut(s) 621
BspFNI CGCG 2 cut(s) 545, 630
BspLI GGNNCC 1 cut(s) 717
BspMAI CTGCAG 1 cut(s) 409
BspMI ACCTGC 3 cut(s) 35, 121, 846
BspPI GGATC 3 cut(s) 136, 747, 865
BsrI ACTGG 3 cut(s) 145, 312, 702
BssMI GATC 4 cut(s) 141, 199, 752, 870
Bst2UI CCWGG 2 cut(s) 219, 420
Bst4CI ACNGT 1 cut(s) 932
Bst6I CTCTTC 2 cut(s) 9, 339
BstC8I GCNNGC 2 cut(s) 359, 517
BstDEI CTNAG 4 cut(s) 157, 192, 584, 884
BstF5I GGATG 1 cut(s) 729
BstFNI CGCG 2 cut(s) 545, 630
BstH2I RGCGCY 2 cut(s) 459, 525
BstHHI GCGC 2 cut(s) 458, 524
BstKTI GATC 4 cut(s) 144, 202, 755, 873
BstMAI GTCTC 3 cut(s) 168, 341, 668
BstMBI GATC 4 cut(s) 141, 199, 752, 870
BstMWI GCNNNNNNNGC 2 cut(s) 462, 521
BstNI CCWGG 2 cut(s) 219, 420
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 2 cut(s) 217, 418
BstSFI CTRYAG 1 cut(s) 405
BstUI CGCG 2 cut(s) 545, 630
BstV1I GCAGC 6 cut(s) 195, 235, 277, 366, 391, 531
BstX2I RGATCY 2 cut(s) 752, 870
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 2 cut(s) 752, 870
Bsu36I CCTNAGG 1 cut(s) 884
BsuRI GGCC 1 cut(s) 656
BtgZI GCGATG 1 cut(s) 784
BtrI CACGTC 1 cut(s) 926
BtsCI GGATG 1 cut(s) 729
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 15, 516, 592
BveI ACCTGC 3 cut(s) 35, 121, 846
Cac8I GCNNGC 2 cut(s) 359, 517
CfoI GCGC 2 cut(s) 458, 524
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 1 cut(s) 933
CviAII CATG 3 cut(s) 358, 379, 658
CviQI GTAC 1 cut(s) 933
DdeI CTNAG 4 cut(s) 157, 192, 584, 884
DpnI GATC 4 cut(s) 143, 201, 754, 872
DpnII GATC 4 cut(s) 141, 199, 752, 870
DraIII CACNNNGTG 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 2 cut(s) 9, 339
EarI CTCTTC 2 cut(s) 9, 339
Eco32I GATATC 1 cut(s) 384
Eco47III AGCGCT 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 492
Eco81I CCTNAGG 1 cut(s) 884
Eco88I CYCGRG 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 536
EcoRII CCWGG 2 cut(s) 217, 418
EcoRV GATATC 1 cut(s) 384
FaeI CATG 3 cut(s) 361, 382, 661
FatI CATG 3 cut(s) 357, 378, 657
FauI CCCGC 1 cut(s) 20
FauNDI CATATG 1 cut(s) 491
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 7 cut(s) 184, 246, 249, 266, 355, 405, 520
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 7 cut(s) 184, 246, 249, 266, 355, 405, 520
FspBI CTAG 1 cut(s) 459
GlaI GCGC 2 cut(s) 457, 523
GluI GCNGC 7 cut(s) 184, 246, 249, 266, 355, 405, 520
HaeII RGCGCY 2 cut(s) 459, 525
HaeIII GGCC 1 cut(s) 656
HapII CCGG 1 cut(s) 622
HhaI GCGC 2 cut(s) 458, 524
Hin1II CATG 3 cut(s) 361, 382, 661
Hin6I GCGC 2 cut(s) 456, 522
HinP1I GCGC 2 cut(s) 456, 522
HincII GTYRAC 2 cut(s) 412, 592
HindII GTYRAC 2 cut(s) 412, 592
HinfI GANTC 3 cut(s) 176, 259, 625
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 1 cut(s) 622
HphI GGTGA 2 cut(s) 679, 920
Hpy166II GTNNAC 3 cut(s) 412, 592, 687
Hpy188I TCNGA 3 cut(s) 160, 258, 947
Hpy188III TCNNGA 3 cut(s) 622, 886, 918
Hpy8I GTNNAC 3 cut(s) 412, 592, 687
HpyAV CCTTC 2 cut(s) 74, 535
HpyCH4III ACNGT 1 cut(s) 932
HpyCH4IV ACGT 2 cut(s) 99, 925
HpyCH4V TGCA 3 cut(s) 170, 407, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 462, 521
HpyF3I CTNAG 4 cut(s) 157, 192, 584, 884
HpySE526I ACGT 2 cut(s) 99, 925
Hsp92II CATG 3 cut(s) 361, 382, 661
HspAI GCGC 2 cut(s) 456, 522
Kpn2I TCCGGA 1 cut(s) 621
Ksp22I TGATCA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 4 cut(s) 141, 199, 752, 870
Lsp1109I GCAGC 6 cut(s) 195, 235, 277, 366, 391, 531
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 1 cut(s) 459
MaeII ACGT 2 cut(s) 99, 925
MaeIII GTNAC 2 cut(s) 550, 926
MalI GATC 4 cut(s) 143, 201, 754, 872
MboI GATC 4 cut(s) 141, 199, 752, 870
MboII GAAGA 3 cut(s) 26, 137, 356
MflI RGATCY 2 cut(s) 752, 870
MhlI GDGCHC 1 cut(s) 925
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 5 cut(s) 204, 313, 536, 633, 941
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 321, 586
MnlI CCTC 8 cut(s) 10, 166, 455, 551, 602, 629, 743, 893
Mox20I TGGCCA 1 cut(s) 656
MroI TCCGGA 1 cut(s) 621
MscI TGGCCA 1 cut(s) 656
MseI TTAA 2 cut(s) 411, 806
MslI CAYNNNNRTG 2 cut(s) 362, 677
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 2 cut(s) 248, 767
MspI CCGG 1 cut(s) 622
MspR9I CCNGG 2 cut(s) 219, 420
MvaI CCWGG 2 cut(s) 219, 420
MvnI CGCG 2 cut(s) 545, 630
MwoI GCNNNNNNNGC 2 cut(s) 462, 521
NdeI CATATG 1 cut(s) 491
NdeII GATC 4 cut(s) 141, 199, 752, 870
NlaIII CATG 3 cut(s) 361, 382, 661
NlaIV GGNNCC 1 cut(s) 717
NmuCI GTSAC 1 cut(s) 926
NspI RCATGY 1 cut(s) 361
PaeI GCATGC 1 cut(s) 361
PfeI GAWTC 2 cut(s) 259, 625
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 7 cut(s) 185, 247, 250, 267, 356, 406, 521
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 217, 418
PspGI CCWGG 2 cut(s) 217, 418
PspN4I GGNNCC 1 cut(s) 717
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 2 cut(s) 752, 870
RsaI GTAC 1 cut(s) 934
RsaNI GTAC 1 cut(s) 933
RseI CAYNNNNRTG 2 cut(s) 362, 677
SaqAI TTAA 2 cut(s) 411, 806
SatI GCNGC 7 cut(s) 184, 246, 249, 266, 355, 405, 520
Sau3AI GATC 4 cut(s) 141, 199, 752, 870
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 219, 420
SduI GDGCHC 1 cut(s) 925
SexAI ACCWGGT 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 405
SmiMI CAYNNNNRTG 2 cut(s) 362, 677
SphI GCATGC 1 cut(s) 361
Sse9I AATT 5 cut(s) 204, 313, 536, 633, 941
SsiI CCGC 4 cut(s) 27, 34, 246, 765
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 217, 418
TaaI ACNGT 1 cut(s) 932
TaiI ACGT 2 cut(s) 102, 928
TaqI TCGA 2 cut(s) 386, 917
TasI AATT 5 cut(s) 204, 313, 536, 633, 941
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 259, 625
Tru1I TTAA 2 cut(s) 411, 806
Tru9I TTAA 2 cut(s) 411, 806
TscAI CASTG 3 cut(s) 15, 516, 592
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 6 cut(s) 183, 248, 265, 354, 404, 519
Tsp45I GTSAC 1 cut(s) 926
TspRI CASTG 3 cut(s) 15, 516, 592
Van91I CCANNNNNTGG 1 cut(s) 422
XapI RAATTY 3 cut(s) 204, 536, 941
XceI RCATGY 1 cut(s) 361
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.