Rh1AG168200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000404
Physical Location & Seq
Forward (+)
32053859 .. 32061428
7570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG168200.1

Sequence Viewer

Length: 249 bp
ATGGCGACACTCTGGTTGTCAAAGTTACCAACAAAGCTCGATACAACGTCACAATTCACTGATAATGTTCTTCACAACAATGCAGAGGAAAAAGTGTCAAAGGCAAGGTGGAGGACCAAGCTAATGAAATACTTGAAATACCCAACTGATTGGCTGGAAGAAACCCGTGGCATGCTTATTGTTGTGGCCGGCATGATTGCAACGATGACTTTCCAAGCTGCAGTTAATCCACCTGGCGATGTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

82

Amino Acids

9.3

Weight (kDa)

9.1

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 50 - 81 2.2e-08 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 186
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 4 cut(s) 37, 121, 218, 246
AluI AGCT 4 cut(s) 37, 121, 218, 246
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 114
AvaII GGWCC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 188
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 189
BsnI GGCC 1 cut(s) 188
BspANI GGCC 1 cut(s) 188
BspMAI CTGCAG 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 173, 190
BstDSI CCRYGG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 150
BsuRI GGCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 173, 190
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 114
CviAII CATG 2 cut(s) 172, 193
CviJI RGCY 6 cut(s) 37, 121, 154, 188, 218, 246
CviKI_1 RGCY 6 cut(s) 37, 121, 154, 188, 218, 246
EaeI YGGCCR 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 175, 196
FaiI YATR 2 cut(s) 173, 194
FatI CATG 2 cut(s) 171, 192
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 247
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 189
Hin1II CATG 2 cut(s) 175, 196
HpaII CCGG 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 83, 200, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 2 cut(s) 175, 196
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 140, 202, 219
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 1 cut(s) 247
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 24, 48
MboII GAAGA 2 cut(s) 62, 170
MluCI AATT 1 cut(s) 53
MnlI CCTC 2 cut(s) 79, 105
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 78
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 243
NaeI GCCGGC 1 cut(s) 190
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 2 cut(s) 175, 196
NmuCI GTSAC 1 cut(s) 48
NspI RCATGY 1 cut(s) 175
PaeI GCATGC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 114
PstI CTGCAG 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 234
SetI ASST 7 cut(s) 39, 50, 110, 123, 220, 235, 248
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 78
SphI GCATGC 1 cut(s) 175
Sse9I AATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 53
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 1 cut(s) 175
XspI CTAG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.