Rh1BG136500

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000404
Physical Location & Seq
Forward (+)
22784313 .. 22784633
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG136500.1

Sequence Viewer

Length: 321 bp
ATGATCACGTCTTATGTCTTGGAGCACAACTCGGGAGATTTCAGAAATCTTGAACTTCAACAAATTGTGATTGGCCACAACGACGACCCCTACCATCAGCAAGCATTGTCACCTGTACCACCAGGAACGACAGATAATGTTCTTCACAACAATGCAGCGGAAAAAGTGTCAAAGGCAAGGTGGAGGACCAAGCTAATGAAATACTTGAAATACCCAACTGATTGGCTGGAAGAAACCCGTGGCATGCTTATTGTTGTGGCCGGCATGATTGCAACGATGACTTTCCAAGCTGCAGTTAATCCACCTGGCGATGTTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

106

Amino Acids

11.96

Weight (kDa)

6.39

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 74 - 105 3.6e-08 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AcoI YGGCCR 2 cut(s) 73, 258
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 3 cut(s) 53, 59, 208
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 2 cut(s) 121, 304
AluBI AGCT 2 cut(s) 193, 290
AluI AGCT 2 cut(s) 193, 290
Alw21I GWGCWC 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 2 cut(s) 73, 258
ApeKI GCWGC 2 cut(s) 155, 290
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 167, 277
BccI CCATC 1 cut(s) 102
BciT130I CCWGG 2 cut(s) 123, 306
BclI TGATCA 1 cut(s) 3
BfmI CTRYAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 156, 291
BlsI GCNGC 2 cut(s) 157, 292
Bme1390I CCNGG 2 cut(s) 123, 306
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 123, 306
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BsaJI CCNNGG 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 260
BseBI CCWGG 2 cut(s) 123, 306
BseDI CCNNGG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 167, 277
BshFI GGCC 2 cut(s) 75, 260
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 261
BsnI GGCC 2 cut(s) 75, 260
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 75, 260
BspMAI CTGCAG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 123, 306
BstC8I GCNNGC 3 cut(s) 102, 245, 262
BstDSI CCRYGG 1 cut(s) 238
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 2 cut(s) 123, 306
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 2 cut(s) 121, 304
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 167, 277
BstXI CCANNNNNNTGG 1 cut(s) 222
BsuRI GGCC 2 cut(s) 75, 260
BtgI CCRYGG 1 cut(s) 238
BtrI CACGTC 1 cut(s) 9
Cac8I GCNNGC 3 cut(s) 102, 245, 262
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 244, 265
CviJI RGCY 5 cut(s) 75, 193, 226, 260, 290
CviKI_1 RGCY 5 cut(s) 75, 193, 226, 260, 290
CviQI GTAC 1 cut(s) 116
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 2 cut(s) 73, 258
Eco47I GGWCC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 121, 304
FaeI CATG 2 cut(s) 247, 268
FaiI YATR 3 cut(s) 15, 245, 266
FatI CATG 2 cut(s) 243, 264
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 156, 291
Fsp4HI GCNGC 2 cut(s) 156, 291
GluI GCNGC 2 cut(s) 156, 291
HaeIII GGCC 2 cut(s) 75, 260
HapII CCGG 1 cut(s) 261
Hin1II CATG 2 cut(s) 247, 268
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 33, 50
Hpy99I CGWCG 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 155, 272, 293
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 2 cut(s) 247, 268
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 108, 126, 135, 212, 274, 291
Lsp1109I GCAGC 2 cut(s) 167, 277
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 108
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 134, 242
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 1 cut(s) 63
MluNI TGGCCA 1 cut(s) 75
MnlI CCTC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 75
MroNI GCCGGC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 75
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 123, 306
MvaI CCWGG 2 cut(s) 123, 306
NaeI GCCGGC 1 cut(s) 262
NdeII GATC 1 cut(s) 3
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 2 cut(s) 247, 268
NmuCI GTSAC 1 cut(s) 108
NspI RCATGY 1 cut(s) 247
PaeI GCATGC 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 262
PkrI GCNGC 2 cut(s) 157, 292
Psp6I CCWGG 2 cut(s) 121, 304
PspGI CCWGG 2 cut(s) 121, 304
PspPI GGNCC 1 cut(s) 186
PstI CTGCAG 1 cut(s) 295
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 2 cut(s) 156, 291
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 123, 306
SduI GDGCHC 1 cut(s) 27
SetI ASST 7 cut(s) 11, 115, 182, 195, 292, 307, 320
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 150
SphI GCATGC 1 cut(s) 247
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 121, 304
TaiI ACGT 1 cut(s) 11
TasI AATT 1 cut(s) 63
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 2 cut(s) 155, 290
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 186
XceI RCATGY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.