RLG00000029039

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000404
Physical Location & Seq
Reverse (-)
31805292 .. 31812597
7306 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029039

Sequence Viewer

Length: 936 bp
ATGGAGATTAGAGAAGATCACCATGAAGACGATACAACAAGAGCACTCTATGAGGCAGCAGATGCCGGCTCAGTACCATCTATAGAAAGATTGATCCAGAAAGACCCTCGCATCCTCAACAAAGTTTCACTCACTCACTTCAGTGAAACTCCCCTCCACATCTCAGCTCTGCTCGGCCATATTGATTTCACCAAGGCTATTCTTACTCATAACTCGAGGCTTGCCACCGAGACTGTTCAAGCTCTTCTGAAAACCTACCCCGACGCTTGCTTGTTTCGGGATCAGGATGGAAGAATCCCTCTTCACTATGCCGCTATGAGAGGACACGCTGAGGTCTTAGCTGAGCTGATGCGCGCAAACCCTGAATCAGTCACGTTAAGGGTTCTTGATAGAGGAGACACGGTGTTCCACTTATGTGTTACTTATAACCAATTAGAATGCTTGAAGCTATTGGTGGAAGAGGTAGGAGACAATAGAGACCTCCTCAATGCTAGAGCTGGATGCGATGGTGGTATGACCATCCTCGAATTAGCTGTGATGCTAAGGAAAATTGAGACCATAAAATACTTGCTTTCGCTACCTGTTGTACAAGCAGAAGCAAATGTTGTACATGGGAAGGTTTTAAACATGGTAGAAAATAGTCCAAGAGACTTCGTAAGTTTGGAAATTCAACAAGTTTTGATGGATGCTGGTATCATGAGAAATGGAAAGAATGAAAATCAGCAACAACCACCATTACAAAACAACAAATCAAAGAAAGATGGAAAAAAGGGAAGGAAAAGTGCAAAAAAGGGGAATAAGAGTGAGGATTGGGTGGAAGAGAAACGCATTGTGGCGCCTAATCTACCGGAAAATCAAGAGGACGAGCAGCAACAATGCAAATCCACATCAGCCTCCCATCAACTCTTATTCGAACGTCTAAGTGGAGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

312

Amino Acids

34.94

Weight (kDa)

6.15

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 118 4.2e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 77 - 154 1.3e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 131 - 192 2.6e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 835
AccII CGCG 1 cut(s) 354
AciI CCGC 1 cut(s) 312
AclWI GGATC 2 cut(s) 88, 288
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 836
AfaI GTAC 3 cut(s) 75, 588, 609
AgsI TTSAA 3 cut(s) 239, 445, 671
AleI CACNNNNGTG 2 cut(s) 141, 414
AluBI AGCT 7 cut(s) 167, 242, 341, 346, 448, 497, 533
AluI AGCT 7 cut(s) 167, 242, 341, 346, 448, 497, 533
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 6 cut(s) 224, 390, 462, 471, 548, 642
AlwI GGATC 2 cut(s) 88, 288
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 56, 868
ApoI RAATTY 1 cut(s) 666
AspLEI GCGC 3 cut(s) 354, 356, 838
AsuHPI GGTGA 2 cut(s) 11, 181
AsuII TTCGAA 1 cut(s) 912
AvaI CYCGRG 1 cut(s) 214
BanI GGYRCC 1 cut(s) 835
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 68, 880
BccI CCATC 7 cut(s) 85, 281, 500, 527, 676, 755, 906
BcoDI GTCTC 6 cut(s) 224, 390, 462, 471, 548, 642
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 839
BisI GCNGC 3 cut(s) 57, 312, 869
BlpI GCTNAGC 1 cut(s) 342
BlsI GCNGC 3 cut(s) 58, 313, 870
BmeT110I CYCGRG 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 837
BmsI GCATC 6 cut(s) 52, 120, 339, 491, 528, 676
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 468, 500
Bpu10I CCTNAGC 2 cut(s) 330, 542
Bpu1102I GCTNAGC 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 912
BsaHI GRCGYC 1 cut(s) 836
BsaI GGTCTC 2 cut(s) 471, 548
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bse118I RCCGGY 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 5 cut(s) 111, 292, 506, 519, 691
BseMII CTCAG 4 cut(s) 84, 177, 321, 333
BsePI GCGCGC 1 cut(s) 352
BseRI GAGGAG 2 cut(s) 408, 473
BseXI GCAGC 2 cut(s) 68, 880
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 2 cut(s) 66, 848
BsmAI GTCTC 6 cut(s) 224, 390, 462, 471, 548, 642
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 2 cut(s) 471, 548
BsoBI CYCGRG 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 912
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1407I TGTACA 2 cut(s) 586, 607
Bsp143I GATC 3 cut(s) 16, 93, 280
Bsp1720I GCTNAGC 1 cut(s) 342
BspACI CCGC 1 cut(s) 312
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 4 cut(s) 83, 176, 322, 334
BspFNI CGCG 1 cut(s) 354
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 1 cut(s) 837
BspPI GGATC 2 cut(s) 88, 288
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 1 cut(s) 912
BspT107I GGYRCC 1 cut(s) 835
BspTNI GGTCTC 2 cut(s) 471, 548
BsrFI RCCGGY 1 cut(s) 65
BsrGI TGTACA 2 cut(s) 586, 607
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 192
BssHII GCGCGC 1 cut(s) 352
BssMI GATC 3 cut(s) 16, 93, 280
BssNI GRCGYC 1 cut(s) 836
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 235, 403
Bst6I CTCTTC 4 cut(s) 249, 306, 453, 813
BstACI GRCGYC 1 cut(s) 836
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 2 cut(s) 586, 607
BstBI TTCGAA 1 cut(s) 912
BstC8I GCNNGC 4 cut(s) 67, 222, 268, 354
BstDEI CTNAG 7 cut(s) 70, 163, 330, 337, 342, 542, 920
BstF5I GGATG 5 cut(s) 111, 292, 506, 519, 691
BstFNI CGCG 1 cut(s) 354
BstH2I RGCGCY 1 cut(s) 839
BstHHI GCGC 3 cut(s) 354, 356, 838
BstKTI GATC 3 cut(s) 19, 96, 283
BstMAI GTCTC 6 cut(s) 224, 390, 462, 471, 548, 642
BstMBI GATC 3 cut(s) 16, 93, 280
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 68, 880
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 5 cut(s) 111, 292, 506, 519, 691
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 4 cut(s) 67, 222, 268, 354
CciI TCATGA 1 cut(s) 696
CfoI GCGC 3 cut(s) 354, 356, 838
Cfr10I RCCGGY 1 cut(s) 65
CseI GACGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 74, 587, 608
CviAII CATG 4 cut(s) 23, 611, 628, 697
CviQI GTAC 3 cut(s) 74, 587, 608
DdeI CTNAG 7 cut(s) 70, 163, 330, 337, 342, 542, 920
DinI GGCGCC 1 cut(s) 837
DpnI GATC 3 cut(s) 18, 95, 282
DpnII GATC 3 cut(s) 16, 93, 280
DraI TTTAAA 1 cut(s) 624
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 4 cut(s) 249, 306, 453, 813
EarI CTCTTC 4 cut(s) 249, 306, 453, 813
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 2 cut(s) 471, 548
Eco57I CTGAAG 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 837
EheI GGCGCC 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 4 cut(s) 26, 614, 631, 700
FatI CATG 4 cut(s) 22, 610, 627, 696
Fnu4HI GCNGC 3 cut(s) 57, 312, 869
FokI GGATG 5 cut(s) 98, 299, 506, 513, 698
Fsp4HI GCNGC 3 cut(s) 57, 312, 869
FspBI CTAG 1 cut(s) 492
GlaI GCGC 3 cut(s) 353, 355, 837
GluI GCNGC 3 cut(s) 57, 312, 869
HaeII RGCGCY 1 cut(s) 839
HaeIII GGCC 1 cut(s) 177
HapII CCGG 2 cut(s) 66, 848
HgaI GACGC 1 cut(s) 272
HhaI GCGC 3 cut(s) 354, 356, 838
Hin1I GRCGYC 1 cut(s) 836
Hin1II CATG 4 cut(s) 26, 614, 631, 700
Hin6I GCGC 3 cut(s) 352, 354, 836
HinP1I GCGC 3 cut(s) 352, 354, 836
HinfI GANTC 2 cut(s) 294, 365
HpaII CCGG 2 cut(s) 66, 848
HphI GGTGA 2 cut(s) 11, 181
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 6 cut(s) 97, 278, 284, 386, 697, 857
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 610, 768
HpyCH4III ACNGT 2 cut(s) 235, 403
HpyCH4IV ACGT 2 cut(s) 374, 916
HpyCH4V TGCA 2 cut(s) 785, 879
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 7 cut(s) 70, 163, 330, 337, 342, 542, 920
HpySE526I ACGT 2 cut(s) 374, 916
Hsp92I GRCGYC 1 cut(s) 836
Hsp92II CATG 4 cut(s) 26, 614, 631, 700
HspAI GCGC 3 cut(s) 352, 354, 836
KasI GGCGCC 1 cut(s) 835
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 16, 93, 280
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 8 cut(s) 79, 110, 269, 375, 483, 594, 675, 861
Lsp1109I GCAGC 2 cut(s) 68, 880
LweI GCATC 6 cut(s) 52, 120, 339, 491, 528, 676
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 374, 916
MaeIII GTNAC 2 cut(s) 370, 418
MalI GATC 3 cut(s) 18, 95, 282
MboI GATC 3 cut(s) 16, 93, 280
MboII GAAGA 7 cut(s) 26, 38, 236, 293, 303, 470, 830
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 431, 527, 549, 666
Mly113I GGCGCC 1 cut(s) 836
MroNI GCCGGC 1 cut(s) 65
MseI TTAA 2 cut(s) 377, 623
MslI CAYNNNNRTG 2 cut(s) 141, 414
MspI CCGG 2 cut(s) 66, 848
Mva1269I GAATGC 1 cut(s) 443
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 62
NaeI GCCGGC 1 cut(s) 67
NarI GGCGCC 1 cut(s) 836
NdeII GATC 3 cut(s) 16, 93, 280
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 4 cut(s) 26, 614, 631, 700
NlaIV GGNNCC 1 cut(s) 837
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 370
NspV TTCGAA 1 cut(s) 912
OliI CACNNNNGTG 2 cut(s) 141, 414
PaeR7I CTCGAG 1 cut(s) 214
PagI TCATGA 1 cut(s) 696
PauI GCGCGC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 249
PctI GAATGC 1 cut(s) 443
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 294, 365
PkrI GCNGC 3 cut(s) 58, 313, 870
PluTI GGCGCC 1 cut(s) 839
PsiI TTATAA 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 837
PspXI VCTCGAGB 1 cut(s) 214
PteI GCGCGC 1 cut(s) 352
RsaI GTAC 3 cut(s) 75, 588, 609
RsaNI GTAC 3 cut(s) 74, 587, 608
RseI CAYNNNNRTG 2 cut(s) 141, 414
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 377, 623
SatI GCNGC 3 cut(s) 57, 312, 869
Sau3AI GATC 3 cut(s) 16, 93, 280
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 6 cut(s) 52, 120, 339, 491, 528, 676
SfcI CTRYAG 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 837
Sfr274I CTCGAG 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 912
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 141, 414
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 4 cut(s) 431, 527, 549, 666
SsiI CCGC 1 cut(s) 312
SspDI GGCGCC 1 cut(s) 835
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 235, 403
TaiI ACGT 2 cut(s) 377, 919
TaqI TCGA 3 cut(s) 215, 525, 912
TasI AATT 4 cut(s) 431, 527, 549, 666
TatI WGTACW 2 cut(s) 586, 607
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 2 cut(s) 294, 365
Tru1I TTAA 2 cut(s) 377, 623
Tru9I TTAA 2 cut(s) 377, 623
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 56, 868
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 39, 729
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 666
XhoI CTCGAG 1 cut(s) 214
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.