FvH4_7g06250

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000404
Physical Location & Seq
Forward (+)
6361744 .. 6363275
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06250.t1

Sequence Viewer

Length: 876 bp
ATGATCCAAAAGGATCCACTGATTCTCAGAAGAGTTTCTCTGACTCCCTTGAGTGAAACCCCATTGCATGTTTCAACTTTGCTTGGCCACCTTGAGTTTTCTAAAATCATTCTCACTCATAATCCAAGACTTGCCACGGAGTTAGACTCCTTAAGGCGGTCACCCCTGCACTTGGCTTCGGCAGAAGGACACAAGGAGCTCGTACAAGTTTTGTTGCCGGCATTTCCTGATGCATGCATGTTACGTGATCAGGAAGGGAGAATCCCTCTGCACTATGCTGCCATGAGAGGACGCATTGAGGTGGTCATGGAGCTGATGCGTGCAAAGCCTCAGTCCATTGCTCTTCCGGTTCTCGACAGATCAGGACAAACGAGTCTGCATTTATGTGTTAAACATAACCATCTGGACTGCTTGAAATTTTTGGTGAATGAAGTGGGAGAGGATAGCGACCTACTCAACTCAGGAACTGGCTCTAATGAGAGCATGACAATCATACGCTTAGCTATCATGCTAAGGCAAATTGAGACGGCTGAAACCTCCTTTCCTCCACCACCAACCACTGCCTCTTCGCCTCAAGAGAGCGCACGCCCACCACCAATTTCCACCTCCGGCATGTCGGTTAGGATGTCGCCCACCCACAGATCATCTCCGAGCTGCTCAACCCAAATCAAATCTAAAAGACCCGATCAAGGCATGGTATGGATCTCTGCCACGCCGCCACACTGTCATCACCACCCGGTGATCTCCAATTCGACAGCAAAGCTTCAGACCACCCATCAAACAATCCGAGTAAAATCTGGGATACCACGACCTCCACCTTCTCTCGTCAACCATCATCCCTCCGCCATCATTCACGTCTTCCCCCGCCGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

292

Amino Acids

32.14

Weight (kDa)

9.57

Isoelectric Point (pI)

69.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 73 2.2e-07 Ankyrin repeats (3 copies)
Ank_4 PF13637 56 - 102 5.8e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 81 - 148 8.6e-12 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 372
AciI CCGC 4 cut(s) 157, 716, 843, 865
AclWI GGATC 3 cut(s) 8, 21, 710
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 749
AdeI CACNNNGTG 1 cut(s) 739
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 3 cut(s) 156, 172, 689
AflII CTTAAG 1 cut(s) 151
AgsI TTSAA 2 cut(s) 75, 415
AjiI CACGTC 1 cut(s) 856
AluBI AGCT 5 cut(s) 199, 313, 503, 654, 763
AluI AGCT 5 cut(s) 199, 313, 503, 654, 763
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 3 cut(s) 8, 21, 710
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 278, 654
ApoI RAATTY 1 cut(s) 416
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 584
AsuC2I CCSGG 1 cut(s) 737
AsuHPI GGTGA 4 cut(s) 153, 436, 722, 751
BalI TGGCCA 1 cut(s) 87
BamHI GGATCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 850
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 265, 641
BccI CCATC 4 cut(s) 408, 783, 840, 854
BceAI ACGGC 1 cut(s) 543
BciVI GTATCC 1 cut(s) 795
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 737
BcoDI GTCTC 1 cut(s) 518
BfrI CTTAAG 1 cut(s) 151
BfuI GTATCC 1 cut(s) 795
BisI GCNGC 3 cut(s) 279, 655, 716
BlpI GCTNAGC 1 cut(s) 499
BlsI GCNGC 3 cut(s) 280, 656, 717
Bme1390I CCNGG 1 cut(s) 737
BmgBI CACGTC 1 cut(s) 856
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 2 cut(s) 220, 306
BpiI GAAGAC 1 cut(s) 850
BplI GAGNNNNNCTC 4 cut(s) 131, 163, 250, 282
Bpu10I CCTNAGC 1 cut(s) 512
Bpu1102I GCTNAGC 1 cut(s) 499
BpuEI CTTGAG 3 cut(s) 70, 113, 558
BpuMI CCSGG 1 cut(s) 737
BsaAI YACGTR 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 172, 689
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 2 cut(s) 62, 336
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 630, 835
BseLI CCNNNNNNNGG 3 cut(s) 156, 172, 689
BseMI GCAATG 2 cut(s) 62, 336
BseMII CTCAG 3 cut(s) 40, 344, 474
BseNI ACTGG 1 cut(s) 472
BseXI GCAGC 2 cut(s) 265, 641
BsgI GTGCAG 2 cut(s) 152, 254
BshFI GGCC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 4 cut(s) 218, 347, 609, 737
BslI CCNNNNNNNGG 3 cut(s) 156, 172, 689
BsmAI GTCTC 1 cut(s) 518
BsmBI CGTCTC 1 cut(s) 518
BsnI GGCC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 9 cut(s) 3, 13, 247, 359, 641, 685, 702, 741, 869
Bsp1720I GCTNAGC 1 cut(s) 499
BspACI CCGC 4 cut(s) 157, 716, 843, 865
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 3 cut(s) 39, 343, 473
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 3 cut(s) 8, 21, 710
BspQI GCTCTTC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 62, 336
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 9 cut(s) 3, 13, 247, 359, 641, 685, 702, 741, 869
Bst4CI ACNGT 1 cut(s) 725
Bst6I CTCTTC 3 cut(s) 25, 348, 571
BstAFI CTTAAG 1 cut(s) 151
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 4 cut(s) 219, 235, 321, 586
BstDEI CTNAG 5 cut(s) 26, 330, 460, 499, 512
BstDSI CCRYGG 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 159
BstF5I GGATG 2 cut(s) 630, 835
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 9 cut(s) 6, 16, 250, 362, 644, 688, 705, 744, 872
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 9 cut(s) 3, 13, 247, 359, 641, 685, 702, 741, 869
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNSI RCATGY 4 cut(s) 71, 237, 241, 616
BstPI GGTNACC 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 735
BstV1I GCAGC 2 cut(s) 265, 641
BstV2I GAAGAC 1 cut(s) 850
BstX2I RGATCY 2 cut(s) 13, 702
BstYI RGATCY 2 cut(s) 13, 702
BsuI GTATCC 1 cut(s) 795
BsuRI GGCC 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 856
BtsCI GGATG 2 cut(s) 630, 835
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 3 cut(s) 17, 558, 721
Cac8I GCNNGC 4 cut(s) 219, 235, 321, 586
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 217
CseI GACGC 1 cut(s) 300
Csp6I GTAC 1 cut(s) 203
CviAII CATG 9 cut(s) 68, 234, 238, 283, 307, 484, 508, 613, 694
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 5 cut(s) 26, 330, 460, 499, 512
DpnI GATC 9 cut(s) 5, 15, 249, 361, 643, 687, 704, 743, 871
DpnII GATC 9 cut(s) 3, 13, 247, 359, 641, 685, 702, 741, 869
DraIII CACNNNGTG 1 cut(s) 739
DrdI GACNNNNNNGTC 1 cut(s) 372
DseDI GACNNNNNNGTC 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 3 cut(s) 25, 348, 571
EarI CTCTTC 3 cut(s) 25, 348, 571
EciI GGCGGA 1 cut(s) 832
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 749
Eco91I GGTNACC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 159
EcoT22I ATGCAT 2 cut(s) 235, 239
EcoT38I GRGCYC 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 9 cut(s) 71, 237, 241, 286, 310, 487, 511, 616, 697
FatI CATG 9 cut(s) 67, 233, 237, 282, 306, 483, 507, 612, 693
FauI CCCGC 1 cut(s) 872
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 279, 655, 716
FokI GGATG 2 cut(s) 637, 822
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 3 cut(s) 279, 655, 716
GlaI GCGC 1 cut(s) 583
GluI GCNGC 3 cut(s) 279, 655, 716
HaeIII GGCC 1 cut(s) 87
HapII CCGG 4 cut(s) 218, 347, 609, 737
HgaI GACGC 1 cut(s) 300
HhaI GCGC 1 cut(s) 584
Hin1II CATG 9 cut(s) 71, 237, 241, 286, 310, 487, 511, 616, 697
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 5 cut(s) 22, 43, 146, 261, 373
HpaII CCGG 4 cut(s) 218, 347, 609, 737
HphI GGTGA 4 cut(s) 153, 436, 722, 751
Hpy166II GTNNAC 1 cut(s) 829
Hpy188I TCNGA 5 cut(s) 29, 42, 651, 768, 788
Hpy188III TCNNGA 8 cut(s) 227, 251, 353, 363, 404, 462, 575, 873
Hpy8I GTNNAC 1 cut(s) 829
HpyAV CCTTC 3 cut(s) 179, 248, 828
HpyCH4III ACNGT 1 cut(s) 725
HpyCH4IV ACGT 2 cut(s) 244, 855
HpyCH4V TGCA 7 cut(s) 67, 169, 233, 237, 271, 323, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 5 cut(s) 26, 330, 460, 499, 512
HpySE526I ACGT 2 cut(s) 244, 855
Hsp92II CATG 9 cut(s) 71, 237, 241, 286, 310, 487, 511, 616, 697
HspAI GCGC 1 cut(s) 582
KroI GCCGGC 1 cut(s) 217
KroNI GCCGGC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 9 cut(s) 3, 13, 247, 359, 641, 685, 702, 741, 869
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 196, 310
Lsp1109I GCAGC 2 cut(s) 265, 641
LweI GCATC 2 cut(s) 220, 306
MaeII ACGT 2 cut(s) 244, 855
MaeIII GTNAC 2 cut(s) 159, 240
MalI GATC 9 cut(s) 5, 15, 249, 361, 643, 687, 704, 743, 871
MboI GATC 9 cut(s) 3, 13, 247, 359, 641, 685, 702, 741, 869
MboII GAAGA 4 cut(s) 42, 335, 558, 850
MflI RGATCY 2 cut(s) 13, 702
MhlI GDGCHC 1 cut(s) 201
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 4 cut(s) 416, 519, 597, 748
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 3 cut(s) 37, 140, 382
Mox20I TGGCCA 1 cut(s) 87
Mph1103I ATGCAT 2 cut(s) 235, 239
MroNI GCCGGC 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 34
MscI TGGCCA 1 cut(s) 87
MseI TTAA 2 cut(s) 152, 390
MslI CAYNNNNRTG 2 cut(s) 299, 384
Msp20I TGGCCA 1 cut(s) 87
MspCI CTTAAG 1 cut(s) 151
MspI CCGG 4 cut(s) 218, 347, 609, 737
MspR9I CCNGG 1 cut(s) 737
MwoI GCNNNNNNNGC 1 cut(s) 325
NaeI GCCGGC 1 cut(s) 219
NciI CCSGG 1 cut(s) 737
NdeII GATC 9 cut(s) 3, 13, 247, 359, 641, 685, 702, 741, 869
NgoMIV GCCGGC 1 cut(s) 217
NlaIII CATG 9 cut(s) 71, 237, 241, 286, 310, 487, 511, 616, 697
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 159
NsiI ATGCAT 2 cut(s) 235, 239
NspI RCATGY 4 cut(s) 71, 237, 241, 616
PaeI GCATGC 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 22, 261
PkrI GCNGC 3 cut(s) 280, 656, 717
PleI GAGTC 3 cut(s) 37, 140, 381
PpsI GAGTC 3 cut(s) 37, 140, 381
Ppu21I YACGTR 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 2 cut(s) 13, 702
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 299, 384
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 152, 390
SatI GCNGC 3 cut(s) 279, 655, 716
Sau3AI GATC 9 cut(s) 3, 13, 247, 359, 641, 685, 702, 741, 869
SchI GAGTC 3 cut(s) 37, 140, 382
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 2 cut(s) 220, 306
SmiMI CAYNNNNRTG 2 cut(s) 299, 384
SmlI CTYRAG 4 cut(s) 49, 92, 151, 573
SmoI CTYRAG 4 cut(s) 49, 92, 151, 573
SphI GCATGC 1 cut(s) 237
Sse9I AATT 4 cut(s) 416, 519, 597, 748
SsiI CCGC 4 cut(s) 157, 716, 843, 865
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 735
TaaI ACNGT 1 cut(s) 725
TaiI ACGT 2 cut(s) 247, 858
TaqI TCGA 2 cut(s) 354, 752
TasI AATT 4 cut(s) 416, 519, 597, 748
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 2 cut(s) 22, 261
Tru1I TTAA 2 cut(s) 152, 390
Tru9I TTAA 2 cut(s) 152, 390
TscAI CASTG 3 cut(s) 24, 565, 728
TseFI GTSAC 1 cut(s) 159
TseI GCWGC 2 cut(s) 278, 654
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 1 cut(s) 444
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 3 cut(s) 24, 565, 728
Vha464I CTTAAG 1 cut(s) 151
XapI RAATTY 1 cut(s) 416
XceI RCATGY 4 cut(s) 71, 237, 241, 616
XmnI GAANNNNTTC 1 cut(s) 34
Zsp2I ATGCAT 2 cut(s) 235, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.