Rmu_sc0000404.1_g000006

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000404.1
OG0000404
Physical Location & Seq
Reverse (-)
21037 .. 21549
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000404.1_g000006.1.cds

Sequence Viewer

Length: 513 bp
atggatcgcttggtttccctacaagaagaatcaagtgttctcaagaaaagagtccaagagctattgacaaagactaacatcattagtagcattgctcagcccagtggtgaagctaaagaaaggaggattccagtggagaaggaatccaattgggttgagaggcaaaggggaatgctcattggtatggctactgcgatcgcatcgatggcgactagccttgtggtttgcccactcggtgagatttggcaaaatgcacacaatgacacatcattttgcactccatccccctgcatctttgggacaaccgtctcaaattatgtgcagccagtacacttccaggagttcatcaagaacaactgcacatgcttcgttttctctatgtacatcactctcctcttgctttgtgaatttgtggatgtatacagtgctcatgtgcctcacattattcttctagaacatgaccttctacaaggccatcagcttggtagatacgagcccaggcgtacctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

170

Amino Acids

19.27

Weight (kDa)

6.29

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 420
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 407
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 3 cut(s) 330, 383, 505
AjnI CCWGG 2 cut(s) 336, 497
AluBI AGCT 3 cut(s) 61, 113, 481
AluI AGCT 3 cut(s) 61, 113, 481
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 407
AsiSI GCGATCGC 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 119, 248
BanII GRGCYC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 334
BccI CCATC 3 cut(s) 199, 289, 483
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BciT130I CCWGG 2 cut(s) 338, 499
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 2 cut(s) 213, 452
BisI GCNGC 1 cut(s) 323
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 324
Bme1390I CCNGG 2 cut(s) 338, 499
BmrFI CCNGG 2 cut(s) 338, 499
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 209, 300
BmuI ACTGGG 1 cut(s) 96
BoxI GACNNNNGTC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 497
Bse1I ACTGG 3 cut(s) 102, 131, 326
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 2 cut(s) 338, 499
BseCI ATCGAT 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 2 cut(s) 281, 421
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 3 cut(s) 102, 131, 326
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 334
BsgI GTGCAG 2 cut(s) 341, 343
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 474
BshVI ATCGAT 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 430
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 313
BsmBI CGTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 474
Bsp1286I GDGCHC 2 cut(s) 430, 498
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 2 cut(s) 4, 195
Bsp1720I GCTNAGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 203
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 3 cut(s) 102, 131, 326
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 2 cut(s) 4, 195
BssNAI GTATAC 1 cut(s) 421
Bst1107I GTATAC 1 cut(s) 421
Bst2UI CCWGG 2 cut(s) 338, 499
Bst4CI ACNGT 2 cut(s) 307, 425
BstAUI TGTACA 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 281, 421
BstKTI GATC 2 cut(s) 7, 198
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 4, 195
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 338, 499
BstNSI RCATGY 1 cut(s) 366
BstPAI GACNNNNGTC 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 336, 497
BstV1I GCAGC 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 482
BstZ17I GTATAC 1 cut(s) 421
Bsu15I ATCGAT 1 cut(s) 203
BsuRI GGCC 1 cut(s) 474
BsuTUI ATCGAT 1 cut(s) 203
BtsCI GGATG 2 cut(s) 281, 421
BtsIMutI CAGTG 3 cut(s) 109, 138, 430
ClaI ATCGAT 1 cut(s) 203
Csp6I GTAC 3 cut(s) 329, 382, 504
CviAII CATG 3 cut(s) 363, 431, 458
CviJI RGCY 9 cut(s) 61, 100, 113, 188, 216, 325, 474, 481, 496
CviKI_1 RGCY 9 cut(s) 61, 100, 113, 188, 216, 325, 474, 481, 496
CviQI GTAC 3 cut(s) 329, 382, 504
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 6, 197
DpnII GATC 2 cut(s) 4, 195
DraIII CACNNNGTG 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 336, 497
EcoT38I GRGCYC 1 cut(s) 498
Esp3I CGTCTC 1 cut(s) 313
FaeI CATG 3 cut(s) 366, 434, 461
FaiI YATR 7 cut(s) 185, 318, 364, 380, 421, 432, 459
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 362, 430, 457
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 1 cut(s) 323
FokI GGATG 2 cut(s) 268, 428
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 2 cut(s) 213, 452
GluI GCNGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 474
Hin1II CATG 3 cut(s) 366, 434, 461
HinfI GANTC 4 cut(s) 29, 51, 127, 143
HphI GGTGA 2 cut(s) 119, 248
Hpy166II GTNNAC 2 cut(s) 331, 421
Hpy188III TCNNGA 3 cut(s) 43, 349, 452
Hpy8I GTNNAC 2 cut(s) 331, 421
HpyAV CCTTC 2 cut(s) 133, 473
HpyCH4III ACNGT 2 cut(s) 307, 425
HpyCH4V TGCA 5 cut(s) 254, 276, 291, 322, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 3 cut(s) 366, 434, 461
Kzo9I GATC 2 cut(s) 4, 195
LpnPI CCDG 7 cut(s) 115, 144, 301, 323, 339, 350, 484
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 209, 300
MaeI CTAG 2 cut(s) 213, 452
MalI GATC 2 cut(s) 6, 197
MboI GATC 2 cut(s) 4, 195
MboII GAAGA 2 cut(s) 38, 440
MfeI CAATTG 1 cut(s) 148
MhlI GDGCHC 2 cut(s) 430, 498
MluCI AATT 3 cut(s) 148, 313, 407
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 4 cut(s) 117, 153, 404, 447
MseI TTAA 1 cut(s) 511
MslI CAYNNNNRTG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 338, 499
MunI CAATTG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 2 cut(s) 338, 499
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 2 cut(s) 4, 195
NlaIII CATG 3 cut(s) 366, 434, 461
NspI RCATGY 1 cut(s) 366
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 29, 127, 143
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 1 cut(s) 324
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PshAI GACNNNNGTC 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 336, 497
PspGI CCWGG 2 cut(s) 336, 497
PvuI CGATCG 1 cut(s) 198
RgaI GCGATCGC 1 cut(s) 198
RsaI GTAC 3 cut(s) 330, 383, 505
RsaNI GTAC 3 cut(s) 329, 382, 504
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 511
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 2 cut(s) 4, 195
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 2 cut(s) 338, 499
SduI GDGCHC 2 cut(s) 430, 498
SetI ASST 5 cut(s) 63, 115, 465, 483, 509
SfaAI GCGATCGC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 209, 300
SgfI GCGATCGC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 3 cut(s) 148, 313, 407
SspMI CTAG 2 cut(s) 213, 452
StyD4I CCNGG 2 cut(s) 336, 497
TaaI ACNGT 2 cut(s) 307, 425
TaqI TCGA 1 cut(s) 203
TasI AATT 3 cut(s) 148, 313, 407
TatI WGTACW 2 cut(s) 328, 381
TfiI GAWTC 3 cut(s) 29, 127, 143
Tru1I TTAA 1 cut(s) 511
Tru9I TTAA 1 cut(s) 511
TscAI CASTG 3 cut(s) 109, 138, 430
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 334
TspRI CASTG 3 cut(s) 109, 138, 430
XapI RAATTY 1 cut(s) 407
XbaI TCTAGA 1 cut(s) 451
XceI RCATGY 1 cut(s) 366
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 2 cut(s) 213, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.