RchiOBHm_Chr1g0341891

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000404
Physical Location & Seq
Reverse (-)
33802003 .. 33802431
429 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56857

Sequence Viewer

Length: 429 bp
ATGAAATACTTGAAATACCCAACTGATTGGCTGGAAGAAACCCGTGGCATGCTTATTGTTGTGGCCGGCATGATTGCAACGATGACTTTCCAAGCTGCAGTTAATCCACCTGGCGATGTTAGGCAAGGAGATAATACGAATTCTGGTAATATTTATGGAAGTCCTTCCTCAACCGAGTCAGAGATATGTTACGCTGGAAGTGCAGTTTTAGCCTGTGGAGTGAGCGATGCATTTGATTACTTTCTCTTATTCATGAATTTCAGTACCATCTCTTTCCTTGCTTCTTTGAGTGTTACTCTTTTACTTATTAGCGGTTTTCCTCTCCATAACCGACTTTGTATGTGGCTCTTATCAATGGGTATGTGTATCATTCTGTCTTGCCTGGCACTAACCGATCTATTCGATCATTGCATTCATGATCATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

142

Amino Acids

15.55

Weight (kDa)

4.66

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 9 - 130 1.1e-14 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 2 cut(s) 139, 256
AfaI GTAC 1 cut(s) 265
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 2 cut(s) 109, 381
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 139, 256
Asp700I GAANNNNTTC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 2 cut(s) 111, 383
BclI TGATCA 1 cut(s) 418
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 111, 383
BmrFI CCNGG 2 cut(s) 111, 383
BmsI GCATC 1 cut(s) 217
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BsaJI CCNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 406
BseBI CCWGG 2 cut(s) 111, 383
BseDI CCNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 406
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 66
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 394, 403, 418
BspACI CCGC 1 cut(s) 312
BspANI GGCC 1 cut(s) 65
BspHI TCATGA 2 cut(s) 252, 415
BspMAI CTGCAG 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 394, 403, 418
Bst2UI CCWGG 2 cut(s) 111, 383
BstC8I GCNNGC 2 cut(s) 50, 67
BstDSI CCRYGG 1 cut(s) 43
BstKTI GATC 3 cut(s) 397, 406, 421
BstMBI GATC 3 cut(s) 394, 403, 418
BstMWI GCNNNNNNNGC 2 cut(s) 200, 209
BstNI CCWGG 2 cut(s) 111, 383
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 109, 381
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 43
BtgZI GCGATG 2 cut(s) 129, 240
Cac8I GCNNGC 2 cut(s) 50, 67
CciI TCATGA 2 cut(s) 252, 415
Cfr10I RCCGGY 1 cut(s) 65
Csp6I GTAC 1 cut(s) 264
CviAII CATG 4 cut(s) 49, 70, 253, 416
CviJI RGCY 5 cut(s) 31, 65, 95, 212, 346
CviKI_1 RGCY 5 cut(s) 31, 65, 95, 212, 346
CviQI GTAC 1 cut(s) 264
DpnI GATC 3 cut(s) 396, 405, 420
DpnII GATC 3 cut(s) 394, 403, 418
EaeI YGGCCR 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 109, 381
EcoT22I ATGCAT 1 cut(s) 232
FaeI CATG 4 cut(s) 52, 73, 256, 419
FaiI YATR 9 cut(s) 50, 71, 156, 187, 254, 327, 341, 362, 417
FatI CATG 4 cut(s) 48, 69, 252, 415
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 66
Hin1II CATG 4 cut(s) 52, 73, 256, 419
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 253, 416, 426
HpyAV CCTTC 1 cut(s) 174
HpyCH4V TGCA 5 cut(s) 77, 98, 203, 230, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 209
Hsp92II CATG 4 cut(s) 52, 73, 256, 419
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 3 cut(s) 394, 403, 418
LpnPI CCDG 9 cut(s) 17, 79, 96, 123, 129, 180, 226, 368, 395
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 188, 292
MalI GATC 3 cut(s) 396, 405, 420
MboI GATC 3 cut(s) 394, 403, 418
MboII GAAGA 1 cut(s) 47
MluCI AATT 2 cut(s) 139, 256
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 2 cut(s) 178, 330
Mph1103I ATGCAT 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 163
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 111, 383
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 2 cut(s) 111, 383
MwoI GCNNNNNNNGC 2 cut(s) 200, 209
NaeI GCCGGC 1 cut(s) 67
NdeII GATC 3 cut(s) 394, 403, 418
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 4 cut(s) 52, 73, 256, 419
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PagI TCATGA 2 cut(s) 252, 415
PctI GAATGC 1 cut(s) 411
PdiI GCCGGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 109, 381
PspGI CCWGG 2 cut(s) 109, 381
PstI CTGCAG 1 cut(s) 100
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 394, 403, 418
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 111, 383
SetI ASST 2 cut(s) 97, 112
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 96
SphI GCATGC 1 cut(s) 52
Sse9I AATT 2 cut(s) 139, 256
SsiI CCGC 1 cut(s) 312
SspI AATATT 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 109, 381
TaqI TCGA 1 cut(s) 402
TasI AATT 2 cut(s) 139, 256
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 17, 241, 269, 404
XapI RAATTY 2 cut(s) 139, 256
XceI RCATGY 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.