Rroxscaffold_4G00312290

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000404
Physical Location & Seq
Reverse (-)
35155388 .. 35157014
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312290.1

Sequence Viewer

Length: 1206 bp
ATGGCAACTAGACAAGACGAAGGAAACATAATAAAGCTAGTCTACAAGGCATCAGTTTCAGGGTGCGTATCAACCTTAAACCAATTGATCGAAACAAACCCACTCATTCTTAGAAAACTTTCTTTAACTGAATTCACTGAAACTCCTTTGCATGTATCTGCTTTGCTCGGCCACCATGATTTTACCATAACCCTTCTCACCCATAATCCGAACCTGGCGAAGGAATTGGACTCTTCCAGACGCTCACCTCTCCACTGGGCTTCTGCCGAGGGCCACGAGGAGATTGTTCAAGCTTTGTTACATGCAGATGTCGACGTGTGCTTGTTTCATGATCAAGATGGCAGAATTCCGCTTCACTATGCAGCCATGAGAGGACGACTTGAGGTTGTTAAGAAGTTAATACAAGCAAAGCCAGAATCCATTTTTGTTCTGCTTCTGAATAGATCAAGAGAAACAGTTCTGCACTTGTGTGTTAAATACAATCAATTGGAGTGCTTGAAACTATTGGTGGAACAAGTGGGTGAGCAAAGATCAGAGTTCCTCAACTCAAAAGATAGTGTTGGTGGCCAGACCATCCTGCACTTAGCTTTGGTGCTGAAGCAAACTGAGACAATAAGATACCTTCTTTCTATACCTATTATACGAGAAGAAGCAAATGAAATGATCACGTCGTATGTCTTCGAGCACAACTCAGGAGATTTCACAAATCTTGAACTTCAACAAATTGTGATTGGCCACAACGACGACCACCACCATCAGCAACCATTGTCACCTGTACCACCAGGAACGACAGATAATGTTCTTCAGAGCAATGCAGTGGAAAAAGTGTCAAAGGTAAGGTGGTGGACCAAGCTAATGAAATACTTGAAATACCCAACTGATTGGCTGGAAGAAACCCGTGGCATGCTGATTGTTGTGGCCGGCATGATCGCAACGATGACTTTCCAAGCTGCAGTTAATCCACCCGGTGGTGTTTGGCAAGAAAATAATACGAATTCTACAGATAATATTTATGGATTTCCTTCCTGCACCGAGTCACAGATATGTTACGCTGGAACTGCAGTTTTCGCCTATGGCGTAAACAAGGGATTTTACTTCCAGTTCATGAATTTCAATACCTTGTCCTTCCTTGCTTCTTTGAGTGTTACTCTTTTACTTATTAGCGGTTTTCCTCTCCATAACCGGCTTTGCTTTCGAGCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

401

Amino Acids

45.2

Weight (kDa)

6.18

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 106 6.4e-12 Ankyrin repeats (3 copies)
Ank PF00023 81 - 106 4.8e-06 Ankyrin repeat
Ank_4 PF13637 84 - 134 2.6e-11 Ankyrin repeats (many copies)
Ank_2 PF12796 118 - 210 1.5e-13 Ankyrin repeats (3 copies)
PGG PF13962 294 - 388 1.7e-15 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 968
AccI GTMKAC 2 cut(s) 42, 312
AciI CCGC 2 cut(s) 350, 1164
AcoI YGGCCR 4 cut(s) 169, 565, 733, 918
AcsI RAATTY 4 cut(s) 131, 345, 994, 1108
AcuI CTGAAG 2 cut(s) 617, 788
AdeI CACNNNGTG 1 cut(s) 968
AfaI GTAC 1 cut(s) 777
AfiI CCNNNNNNNGG 2 cut(s) 220, 968
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 6 cut(s) 290, 499, 713, 719, 868, 1114
AjiI CACGTC 2 cut(s) 316, 669
AjnI CCWGG 2 cut(s) 213, 781
AleI CACNNNNGTG 1 cut(s) 468
AluBI AGCT 5 cut(s) 37, 293, 587, 853, 950
AluI AGCT 5 cut(s) 37, 293, 587, 853, 950
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 1 cut(s) 602
AoxI GGCC 5 cut(s) 169, 271, 565, 733, 918
ApeKI GCWGC 2 cut(s) 362, 950
ApoI RAATTY 4 cut(s) 131, 345, 994, 1108
Asp700I GAANNNNTTC 2 cut(s) 118, 456
AspS9I GGNCC 2 cut(s) 271, 846
AsuC2I CCSGG 1 cut(s) 966
AsuHPI GGTGA 4 cut(s) 190, 237, 533, 762
AvaII GGWCC 1 cut(s) 846
BalI TGGCCA 2 cut(s) 567, 735
BauI CACGAG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 670
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 2 cut(s) 374, 937
BccI CCATC 3 cut(s) 332, 581, 762
BciT130I CCWGG 2 cut(s) 215, 783
BclI TGATCA 2 cut(s) 331, 663
BcnI CCSGG 1 cut(s) 966
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 2 cut(s) 9, 38
BfmI CTRYAG 3 cut(s) 951, 999, 1059
BisI GCNGC 2 cut(s) 363, 951
BlsI GCNGC 2 cut(s) 364, 952
Bme1390I CCNGG 3 cut(s) 215, 783, 966
Bme18I GGWCC 1 cut(s) 846
BmgBI CACGTC 2 cut(s) 316, 669
BmgT120I GGNCC 2 cut(s) 271, 846
BmrFI CCNGG 3 cut(s) 215, 783, 966
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 59
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 670
BplI GAGNNNNNCTC 4 cut(s) 674, 706, 1132, 1164
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 966
BsaJI CCNNGG 2 cut(s) 267, 898
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 968
Bse118I RCCGGY 2 cut(s) 920, 1182
Bse1I ACTGG 2 cut(s) 260, 1099
Bse3DI GCAATG 1 cut(s) 817
BseBI CCWGG 2 cut(s) 215, 783
BseDI CCNNGG 2 cut(s) 267, 898
BseGI GGATG 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 220, 968
BseMI GCAATG 1 cut(s) 817
BseMII CTCAG 2 cut(s) 597, 705
BseNI ACTGG 2 cut(s) 260, 1099
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 374, 937
BsgI GTGCAG 3 cut(s) 446, 563, 1012
BshFI GGCC 5 cut(s) 171, 273, 567, 735, 920
BsiHKAI GWGCWC 1 cut(s) 687
BsiSI CCGG 3 cut(s) 921, 966, 1183
BslI CCNNNNNNNGG 2 cut(s) 220, 968
BsmAI GTCTC 1 cut(s) 602
BsnI GGCC 5 cut(s) 171, 273, 567, 735, 920
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 6 cut(s) 87, 331, 443, 530, 663, 927
BspACI CCGC 2 cut(s) 350, 1164
BspANI GGCC 5 cut(s) 171, 273, 567, 735, 920
BspCNI CTCAG 2 cut(s) 598, 704
BspHI TCATGA 2 cut(s) 328, 1104
BspMAI CTGCAG 2 cut(s) 955, 1063
BsrDI GCAATG 1 cut(s) 817
BsrFI RCCGGY 2 cut(s) 920, 1182
BsrI ACTGG 2 cut(s) 260, 1099
BssAI RCCGGY 2 cut(s) 920, 1182
BssECI CCNNGG 2 cut(s) 267, 898
BssMI GATC 6 cut(s) 87, 331, 443, 530, 663, 927
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 215, 783
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 905, 922
BstDEI CTNAG 4 cut(s) 110, 583, 606, 691
BstDSI CCRYGG 1 cut(s) 898
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 573
BstKTI GATC 6 cut(s) 90, 334, 446, 533, 666, 930
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 6 cut(s) 87, 331, 443, 530, 663, 927
BstMWI GCNNNNNNNGC 2 cut(s) 1058, 1067
BstNI CCWGG 2 cut(s) 215, 783
BstNSI RCATGY 3 cut(s) 155, 305, 907
BstSCI CCNGG 3 cut(s) 213, 781, 964
BstSFI CTRYAG 3 cut(s) 951, 999, 1059
BstV1I GCAGC 2 cut(s) 374, 937
BstV2I GAAGAC 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 882
BsuRI GGCC 5 cut(s) 171, 273, 567, 735, 920
BtgI CCRYGG 1 cut(s) 898
BtrI CACGTC 2 cut(s) 316, 669
BtsCI GGATG 1 cut(s) 573
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 3 cut(s) 135, 253, 822
Cac8I GCNNGC 2 cut(s) 905, 922
CciI TCATGA 2 cut(s) 328, 1104
Cfr10I RCCGGY 2 cut(s) 920, 1182
Cfr13I GGNCC 2 cut(s) 271, 846
CseI GACGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 776
CviAII CATG 8 cut(s) 152, 176, 302, 329, 367, 904, 925, 1105
CviQI GTAC 1 cut(s) 776
DdeI CTNAG 4 cut(s) 110, 583, 606, 691
DpnI GATC 6 cut(s) 89, 333, 445, 532, 665, 929
DpnII GATC 6 cut(s) 87, 331, 443, 530, 663, 927
DraIII CACNNNGTG 1 cut(s) 968
EaeI YGGCCR 4 cut(s) 169, 565, 733, 918
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 846
Eco57I CTGAAG 2 cut(s) 617, 788
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoRI GAATTC 3 cut(s) 131, 345, 994
EcoRII CCWGG 2 cut(s) 213, 781
FaeI CATG 8 cut(s) 155, 179, 305, 332, 370, 907, 928, 1108
FatI CATG 8 cut(s) 151, 175, 301, 328, 366, 903, 924, 1104
FbaI TGATCA 2 cut(s) 331, 663
FblI GTMKAC 2 cut(s) 42, 312
Fnu4HI GCNGC 2 cut(s) 363, 951
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 2 cut(s) 363, 951
FspBI CTAG 2 cut(s) 9, 38
GluI GCNGC 2 cut(s) 363, 951
HaeIII GGCC 5 cut(s) 171, 273, 567, 735, 920
HapII CCGG 3 cut(s) 921, 966, 1183
HgaI GACGC 1 cut(s) 249
Hin1II CATG 8 cut(s) 155, 179, 305, 332, 370, 907, 928, 1108
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 3 cut(s) 230, 416, 1034
HpaII CCGG 3 cut(s) 921, 966, 1183
HphI GGTGA 4 cut(s) 190, 237, 533, 762
Hpy166II GTNNAC 4 cut(s) 43, 313, 846, 1081
Hpy188I TCNGA 4 cut(s) 210, 438, 535, 807
Hpy188III TCNNGA 7 cut(s) 237, 329, 335, 447, 693, 710, 1105
Hpy8I GTNNAC 4 cut(s) 43, 313, 846, 1081
Hpy99I CGWCG 3 cut(s) 317, 673, 746
HpyAV CCTTC 6 cut(s) 14, 203, 214, 632, 1032, 1135
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 2 cut(s) 315, 668
HpyCH4V TGCA 9 cut(s) 151, 305, 362, 463, 580, 815, 953, 1029, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 1058, 1067
HpyF3I CTNAG 4 cut(s) 110, 583, 606, 691
HpySE526I ACGT 2 cut(s) 315, 668
Hsp92II CATG 8 cut(s) 155, 179, 305, 332, 370, 907, 928, 1108
KroI GCCGGC 1 cut(s) 920
KroNI GCCGGC 1 cut(s) 922
Ksp22I TGATCA 2 cut(s) 331, 663
Kzo9I GATC 6 cut(s) 87, 331, 443, 530, 663, 927
Lsp1109I GCAGC 2 cut(s) 374, 937
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 9, 38
MaeII ACGT 2 cut(s) 315, 668
MaeIII GTNAC 5 cut(s) 297, 768, 1035, 1046, 1144
MalI GATC 6 cut(s) 89, 333, 445, 532, 665, 929
MboI GATC 6 cut(s) 87, 331, 443, 530, 663, 927
MboII GAAGA 5 cut(s) 225, 659, 670, 794, 902
MfeI CAATTG 2 cut(s) 83, 485
MhlI GDGCHC 1 cut(s) 687
MlsI TGGCCA 2 cut(s) 567, 735
MluCI AATT 8 cut(s) 83, 131, 224, 345, 485, 723, 994, 1108
MluNI TGGCCA 2 cut(s) 567, 735
MlyI GAGTC 2 cut(s) 224, 1043
MnlI CCTC 7 cut(s) 258, 262, 271, 365, 376, 551, 1182
Mox20I TGGCCA 2 cut(s) 567, 735
MroNI GCCGGC 1 cut(s) 920
MroXI GAANNNNTTC 2 cut(s) 118, 456
MscI TGGCCA 2 cut(s) 567, 735
MseI TTAA 6 cut(s) 77, 125, 390, 398, 474, 957
MslI CAYNNNNRTG 3 cut(s) 306, 468, 1042
Msp20I TGGCCA 2 cut(s) 567, 735
MspI CCGG 3 cut(s) 921, 966, 1183
MspR9I CCNGG 3 cut(s) 215, 783, 966
MunI CAATTG 2 cut(s) 83, 485
MvaI CCWGG 2 cut(s) 215, 783
MwoI GCNNNNNNNGC 2 cut(s) 1058, 1067
NaeI GCCGGC 1 cut(s) 922
NciI CCSGG 1 cut(s) 966
NdeII GATC 6 cut(s) 87, 331, 443, 530, 663, 927
NgoMIV GCCGGC 1 cut(s) 920
NlaIII CATG 8 cut(s) 155, 179, 305, 332, 370, 907, 928, 1108
NmeAIII GCCGAG 2 cut(s) 147, 292
NmuCI GTSAC 2 cut(s) 768, 1035
NspI RCATGY 3 cut(s) 155, 305, 907
OliI CACNNNNGTG 1 cut(s) 468
PaeI GCATGC 1 cut(s) 907
PagI TCATGA 2 cut(s) 328, 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 1074
PdiI GCCGGC 1 cut(s) 922
PdmI GAANNNNTTC 2 cut(s) 118, 456
PfeI GAWTC 1 cut(s) 416
PflMI CCANNNNNTGG 1 cut(s) 968
PkrI GCNGC 2 cut(s) 364, 952
PleI GAGTC 2 cut(s) 224, 1042
PpsI GAGTC 2 cut(s) 224, 1042
Psp6I CCWGG 2 cut(s) 213, 781
PspGI CCWGG 2 cut(s) 213, 781
PspPI GGNCC 2 cut(s) 271, 846
PstI CTGCAG 2 cut(s) 955, 1063
RsaI GTAC 1 cut(s) 777
RsaNI GTAC 1 cut(s) 776
RseI CAYNNNNRTG 3 cut(s) 306, 468, 1042
SalI GTCGAC 1 cut(s) 311
SaqAI TTAA 6 cut(s) 77, 125, 390, 398, 474, 957
SatI GCNGC 2 cut(s) 363, 951
Sau3AI GATC 6 cut(s) 87, 331, 443, 530, 663, 927
Sau96I GGNCC 2 cut(s) 271, 846
SchI GAGTC 2 cut(s) 224, 1043
ScrFI CCNGG 3 cut(s) 215, 783, 966
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 3 cut(s) 951, 999, 1059
SinI GGWCC 1 cut(s) 846
SmiMI CAYNNNNRTG 3 cut(s) 306, 468, 1042
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SphI GCATGC 1 cut(s) 907
Sse9I AATT 8 cut(s) 83, 131, 224, 345, 485, 723, 994, 1108
SsiI CCGC 2 cut(s) 350, 1164
SspI AATATT 1 cut(s) 1009
SspMI CTAG 2 cut(s) 9, 38
StyD4I CCNGG 3 cut(s) 213, 781, 964
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 2 cut(s) 318, 671
TaqI TCGA 4 cut(s) 90, 312, 681, 1195
TasI AATT 8 cut(s) 83, 131, 224, 345, 485, 723, 994, 1108
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 6 cut(s) 77, 125, 390, 398, 474, 957
Tru9I TTAA 6 cut(s) 77, 125, 390, 398, 474, 957
TscAI CASTG 3 cut(s) 142, 260, 822
TseFI GTSAC 2 cut(s) 768, 1035
TseI GCWGC 2 cut(s) 362, 950
Tsp45I GTSAC 2 cut(s) 768, 1035
TspDTI ATGAA 5 cut(s) 317, 672, 872, 1093, 1121
TspRI CASTG 3 cut(s) 142, 260, 822
Van91I CCANNNNNTGG 1 cut(s) 968
VpaK11BI GGWCC 1 cut(s) 846
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 4 cut(s) 131, 345, 994, 1108
XceI RCATGY 3 cut(s) 155, 305, 907
XmiI GTMKAC 2 cut(s) 42, 312
XmnI GAANNNNTTC 2 cut(s) 118, 456
XspI CTAG 2 cut(s) 9, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.