RLG00000022889

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000404
Physical Location & Seq
Reverse (-)
14134786 .. 14136996
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022889

Sequence Viewer

Length: 1119 bp
ATGGAGATTAGAGAAGATCACCATGAAGACGATACAACAAGAGCACTCTATGAGGCAGCAGTTGCAGGCTCCGTATCATCTTTGGTAAGATTGATCCAGAAAGACCCTCTCATCCTCAACAAAGTTTCACTCACTCACTTCAGCGAAACTCCGCTCCACATCTCAGCTTTGCTCGGCCACCTTGATTTTACCAAAGCTCTTCTTATTCATAACTCGAGACTTGCGCGGGTGAGGGACTCCTTGAGACGCCCTCCGCTCCTCTTGGCATCTGCTGAAGGCCATAAGGAGACGGTCGAAGCTCTTCTGAAAGCCTACCCCGACGCTTGCTTGTTTCGGGATCAAGATGGTAGAGTTCCTCTTCACTACGCCGCAATGAGAGGACATGCTGAGGTTTTAGCTCAGCTGATGTGCGCAAAGCCCGAATCGGTCACATTAAGGGTTCTTGATAGAGGAGACACGGTTTTCCACTTATGTGTTACATATAACCAATTAGAATGCTTGAAGCTATTGGTGGAGGAAGTAGGAGACAATAATAGAGACGTCCTCAGTGCTAGAGCTGGTTGTGATGGTGGTATAACCATTCTTGAATTAGCTGTGATGCTAAGGCAAATTGAGACCATAAGATACTTGCTTTCGCTACCTGTTGTACGGTCAGAAGCAAATGTTGTACATGGGAAGGTATTAAACATTGTAGAAAATATGCCAAAAGACTTCGTAAGCTTGGAAATTCAACGAGTTTTGATAGATTCTGGTATAATGAGGAATGGATGTAATGAAAATGAGCAACAACCACTAGTACCAAACAACAAATCAAAGAAAGAAGGAAAAAAGGGAAGGAAAAGTACCAAAAAGGTAAATGAGAAACGCAGTATAAAGATGGTAATACCCAAACGTGTTAATAATGAAGATCTTAGCAGTCCCGTGGTTATTGGTTCTGCAACATTGTTTTGGGTTCCAATGCTTGGACTGGTGGCTTTATACCACACTATTCGACTTCTCGTTTGGCTGGTCAAGAAGTTGTGGCGCCTCGTCTACCCCAAAAATAAGATGACGAGCAACAGCAACGCAAATCTACTCCAGACTCCCATAAACTCTCATGAGATCAGTTCGTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

373

Amino Acids

41.74

Weight (kDa)

9.12

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 105 5.8e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 86 - 177 1.1e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 88 - 132 1e-05 Ankyrin repeats (many copies)
Ank_2 PF12796 120 - 212 8.7e-11 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 543
Acc16I TGCGCA 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 1023
AccB7I CCANNNNNTGG 1 cut(s) 962
AccBSI CCGCTC 2 cut(s) 154, 256
AccI GTMKAC 1 cut(s) 1032
AccII CGCG 1 cut(s) 226
AciI CCGC 4 cut(s) 152, 226, 254, 369
AclWI GGATC 2 cut(s) 88, 345
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 726
AcuI CTGAAG 2 cut(s) 124, 294
AcyI GRCGYC 3 cut(s) 247, 540, 1024
AfaI GTAC 4 cut(s) 648, 669, 798, 844
AfiI CCNNNNNNNGG 1 cut(s) 962
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 3 cut(s) 502, 587, 731
AhlI ACTAGT 1 cut(s) 793
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 9 cut(s) 167, 197, 299, 398, 403, 505, 557, 593, 720
AluI AGCT 9 cut(s) 167, 197, 299, 398, 403, 505, 557, 593, 720
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 7 cut(s) 211, 238, 281, 447, 519, 531, 608
AlwI GGATC 2 cut(s) 88, 345
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 2 cut(s) 175, 277
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 726
ArsI GACNNNNNNTTYG 2 cut(s) 984, 1016
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 3 cut(s) 226, 413, 1026
AsuHPI GGTGA 2 cut(s) 11, 241
AvaI CYCGRG 1 cut(s) 214
BanI GGYRCC 1 cut(s) 1023
BarI GAAGNNNNNNTAC 2 cut(s) 826, 858
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 338, 560, 871
BcoDI GTCTC 7 cut(s) 211, 238, 281, 447, 519, 531, 608
BcuI ACTAGT 1 cut(s) 793
BfaI CTAG 2 cut(s) 552, 794
BfoI RGCGCY 1 cut(s) 1027
BglII AGATCT 1 cut(s) 907
BisI GCNGC 2 cut(s) 57, 369
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 2 cut(s) 58, 370
BmeT110I CYCGRG 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 70, 954, 1025
BmsI GCATC 2 cut(s) 275, 588
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 4 cut(s) 235, 267, 528, 560
BpmI CTGGAG 1 cut(s) 1061
Bpu10I CCTNAGC 2 cut(s) 387, 602
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 262
BsaHI GRCGYC 3 cut(s) 247, 540, 1024
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 1 cut(s) 921
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 962
Bse1I ACTGG 1 cut(s) 972
Bse3DI GCAATG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 921
BseGI GGATG 2 cut(s) 111, 773
BseLI CCNNNNNNNGG 1 cut(s) 962
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 4 cut(s) 177, 378, 413, 559
BseNI ACTGG 1 cut(s) 972
BseRI GAGGAG 2 cut(s) 248, 465
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 177, 279
BshNI GGYRCC 1 cut(s) 1023
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 214
BslFI GGGAC 2 cut(s) 248, 903
BslI CCNNNNNNNGG 1 cut(s) 962
BsmAI GTCTC 7 cut(s) 211, 238, 281, 447, 519, 531, 608
BsmBI CGTCTC 3 cut(s) 238, 281, 531
BsmFI GGGAC 2 cut(s) 248, 903
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 177, 279
Bso31I GGTCTC 1 cut(s) 608
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 667
Bsp143I GATC 5 cut(s) 16, 93, 337, 907, 1101
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 4 cut(s) 152, 226, 254, 369
BspANI GGCC 2 cut(s) 177, 279
BspCNI CTCAG 4 cut(s) 176, 379, 412, 558
BspFNI CGCG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 3 cut(s) 70, 954, 1025
BspPI GGATC 2 cut(s) 88, 345
BspQI GCTCTTC 2 cut(s) 204, 306
BspT107I GGYRCC 1 cut(s) 1023
BspTNI GGTCTC 1 cut(s) 608
BsrBI CCGCTC 2 cut(s) 154, 256
BsrDI GCAATG 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 1 cut(s) 972
BssECI CCNNGG 1 cut(s) 921
BssMI GATC 5 cut(s) 16, 93, 337, 907, 1101
BssNI GRCGYC 3 cut(s) 247, 540, 1024
Bst4CI ACNGT 3 cut(s) 292, 460, 651
Bst6I CTCTTC 3 cut(s) 204, 306, 363
BstACI GRCGYC 3 cut(s) 247, 540, 1024
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 67, 325
BstDEI CTNAG 6 cut(s) 163, 387, 399, 545, 602, 911
BstDSI CCRYGG 1 cut(s) 921
BstF5I GGATG 2 cut(s) 111, 773
BstFNI CGCG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 1027
BstHHI GCGC 3 cut(s) 226, 413, 1026
BstKTI GATC 5 cut(s) 19, 96, 340, 910, 1104
BstMAI GTCTC 7 cut(s) 211, 238, 281, 447, 519, 531, 608
BstMBI GATC 5 cut(s) 16, 93, 337, 907, 1101
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 386
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 907
BstYI RGATCY 1 cut(s) 907
BsuRI GGCC 2 cut(s) 177, 279
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 2 cut(s) 111, 773
BtsIMutI CAGTG 1 cut(s) 553
Cac8I GCNNGC 2 cut(s) 67, 325
CciI TCATGA 1 cut(s) 1096
CfoI GCGC 3 cut(s) 226, 413, 1026
CseI GACGC 2 cut(s) 255, 329
Csp6I GTAC 4 cut(s) 647, 668, 797, 843
CviAII CATG 4 cut(s) 23, 383, 671, 1097
CviQI GTAC 4 cut(s) 647, 668, 797, 843
DdeI CTNAG 6 cut(s) 163, 387, 399, 545, 602, 911
DinI GGCGCC 1 cut(s) 1025
DpnI GATC 5 cut(s) 18, 95, 339, 909, 1103
DpnII GATC 5 cut(s) 16, 93, 337, 907, 1101
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 3 cut(s) 204, 306, 363
EarI CTCTTC 3 cut(s) 204, 306, 363
Eco31I GGTCTC 1 cut(s) 608
Eco57I CTGAAG 2 cut(s) 124, 294
Eco88I CYCGRG 1 cut(s) 214
EgeI GGCGCC 1 cut(s) 1025
EheI GGCGCC 1 cut(s) 1025
Esp3I CGTCTC 3 cut(s) 238, 281, 531
FaeI CATG 4 cut(s) 26, 386, 674, 1100
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 2 cut(s) 248, 903
FatI CATG 4 cut(s) 22, 382, 670, 1096
FauI CCCGC 1 cut(s) 219
FblI GTMKAC 1 cut(s) 1032
Fnu4HI GCNGC 2 cut(s) 57, 369
FokI GGATG 2 cut(s) 98, 780
Fsp4HI GCNGC 2 cut(s) 57, 369
FspBI CTAG 2 cut(s) 552, 794
FspI TGCGCA 1 cut(s) 412
GlaI GCGC 3 cut(s) 225, 412, 1025
GluI GCNGC 2 cut(s) 57, 369
GsuI CTGGAG 1 cut(s) 1061
HaeII RGCGCY 1 cut(s) 1027
HaeIII GGCC 2 cut(s) 177, 279
HgaI GACGC 2 cut(s) 255, 329
HhaI GCGC 3 cut(s) 226, 413, 1026
Hin1I GRCGYC 3 cut(s) 247, 540, 1024
Hin1II CATG 4 cut(s) 26, 386, 674, 1100
Hin6I GCGC 3 cut(s) 224, 411, 1024
HinP1I GCGC 3 cut(s) 224, 411, 1024
HindIII AAGCTT 1 cut(s) 718
HinfI GANTC 4 cut(s) 236, 422, 746, 1081
HphI GGTGA 2 cut(s) 11, 241
Hpy166II GTNNAC 1 cut(s) 1033
Hpy188I TCNGA 2 cut(s) 306, 655
Hpy188III TCNNGA 9 cut(s) 97, 216, 335, 341, 443, 584, 1012, 1078, 1097
Hpy8I GTNNAC 1 cut(s) 1033
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 4 cut(s) 269, 670, 815, 828
HpyCH4III ACNGT 3 cut(s) 292, 460, 651
HpyCH4IV ACGT 2 cut(s) 540, 892
HpyCH4V TGCA 2 cut(s) 65, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 6 cut(s) 163, 387, 399, 545, 602, 911
HpySE526I ACGT 2 cut(s) 540, 892
Hsp92I GRCGYC 3 cut(s) 247, 540, 1024
Hsp92II CATG 4 cut(s) 26, 386, 674, 1100
HspAI GCGC 3 cut(s) 224, 411, 1024
KasI GGCGCC 1 cut(s) 1023
Kzo9I GATC 5 cut(s) 16, 93, 337, 907, 1101
LguI GCTCTTC 2 cut(s) 204, 306
LmnI GCTCC 3 cut(s) 74, 159, 261
LpnPI CCDG 8 cut(s) 51, 110, 543, 654, 735, 953, 992, 1091
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 275, 588
MaeI CTAG 2 cut(s) 552, 794
MaeII ACGT 2 cut(s) 540, 892
MaeIII GTNAC 2 cut(s) 427, 475
MalI GATC 5 cut(s) 18, 95, 339, 909, 1103
MbiI CCGCTC 2 cut(s) 154, 256
MboI GATC 5 cut(s) 16, 93, 337, 907, 1101
MboII GAAGA 6 cut(s) 26, 38, 191, 293, 350, 917
MflI RGATCY 1 cut(s) 907
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 488, 587, 609, 726
Mly113I GGCGCC 1 cut(s) 1024
MlyI GAGTC 2 cut(s) 230, 1075
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 3 cut(s) 434, 683, 897
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 500
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 62
NarI GGCGCC 1 cut(s) 1024
NdeII GATC 5 cut(s) 16, 93, 337, 907, 1101
NlaIII CATG 4 cut(s) 26, 386, 674, 1100
NlaIV GGNNCC 3 cut(s) 70, 954, 1025
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 427
NsbI TGCGCA 1 cut(s) 412
NspI RCATGY 1 cut(s) 386
OliI CACNNNNGTG 1 cut(s) 471
PaeR7I CTCGAG 1 cut(s) 214
PagI TCATGA 1 cut(s) 1096
PciSI GCTCTTC 2 cut(s) 204, 306
PctI GAATGC 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 422, 746
PflMI CCANNNNNTGG 1 cut(s) 962
PkrI GCNGC 2 cut(s) 58, 370
PleI GAGTC 2 cut(s) 230, 1075
PluTI GGCGCC 1 cut(s) 1027
PpsI GAGTC 2 cut(s) 230, 1075
PspN4I GGNNCC 3 cut(s) 70, 954, 1025
PsuI RGATCY 1 cut(s) 907
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 4 cut(s) 648, 669, 798, 844
RsaNI GTAC 4 cut(s) 647, 668, 797, 843
RseI CAYNNNNRTG 1 cut(s) 471
SapI GCTCTTC 2 cut(s) 204, 306
SaqAI TTAA 3 cut(s) 434, 683, 897
SatI GCNGC 2 cut(s) 57, 369
Sau3AI GATC 5 cut(s) 16, 93, 337, 907, 1101
SchI GAGTC 2 cut(s) 230, 1075
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 275, 588
SfoI GGCGCC 1 cut(s) 1025
Sfr274I CTCGAG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 214, 241
SmoI CTYRAG 2 cut(s) 214, 241
SpeI ACTAGT 1 cut(s) 793
Sse9I AATT 4 cut(s) 488, 587, 609, 726
SsiI CCGC 4 cut(s) 152, 226, 254, 369
SspDI GGCGCC 1 cut(s) 1023
SspMI CTAG 2 cut(s) 552, 794
TaaI ACNGT 3 cut(s) 292, 460, 651
TaiI ACGT 2 cut(s) 543, 895
TaqI TCGA 3 cut(s) 215, 294, 991
TaqII GACCGA 1 cut(s) 415
TasI AATT 4 cut(s) 488, 587, 609, 726
TatI WGTACW 1 cut(s) 667
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 2 cut(s) 422, 746
Tru1I TTAA 3 cut(s) 434, 683, 897
Tru9I TTAA 3 cut(s) 434, 683, 897
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 4 cut(s) 39, 197, 789, 918
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 553
Van91I CCANNNNNTGG 1 cut(s) 962
XapI RAATTY 1 cut(s) 726
XceI RCATGY 1 cut(s) 386
XhoI CTCGAG 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 1032
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 2 cut(s) 552, 794
ZraI GACGTC 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.