Prupe.3G142200_v2.0.a1

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000404
Physical Location & Seq
Reverse (-)
15430287 .. 15431147
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G142200.1

Sequence Viewer

Length: 861 bp
ATGGTACGACTTGTGCAGACGATACCTGCTGCAAAAGCAGAAGCAAATGGCTCAGAGCAAAACCCAAGAGACTCGAGCAGCCTTGAACCTGACCTTGATCAAATTTTGCTTGAGCCTGGTATGGAAAGAAAAAGCAACAAGCTTGATCGCCAATCACCACCACCGAGAACTACTGCTGCTCCCGCTGGTAAGATTTGGAACAAAACGCTAGCAACAGCTCGCCGTCTGATAAATGCACTGGTAAATTGCTTGGAATTCCCTAAAACTTGGGTGGAAGCAACACGTGACATGCTGATGGTTGTGGCAACCATGATATCAACTGCAACTTTCCAAGCTATAATTAACCCACCCGGTGGTGTTTGGGAAGAGAATAAAACAAATGGAACTATTTCTTATTGCACTGATGATCACAAATGCTTAGCTGGAACTGCAGTGGCAGGGAACCGCCTCCCAGAAGAATTCCTCACGTTCATAAGATTCAATACCATCTCGTTTTTTGCTTCTCTCAGTGTCACCCTGTTGCTTGTTGGAGGATTTCCGCTCCAGAATTATATAATTATGTGGCTTTTATCAATGGCCATATGTATCACTCTCTCTTCTATGGCATTAACCTATATGCAGGCTCTCATGTTAGTGCTCCCTGAAACTGAATTTTTTTTTTCATATGGTGATATGTATGATATATCCATTAATGCTTGGTGTTCATTGCTTCTGTCCATCACTTTAATCCACACCACTCGTCTTATCAATTGGTTGGCGAAGAAGTTTTCGCGCAGGTTCAAGCATAATATCCCAAAAAGCCTCAGGGACGTTGTTGATAGTTTGACTGCACCTGCACGTCACCGTACCAACAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

287

Amino Acids

32.06

Weight (kDa)

8.98

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 841
Acc36I ACCTGC 3 cut(s) 34, 765, 841
AccB7I CCANNNNNTGG 1 cut(s) 353
AccBSI CCGCTC 1 cut(s) 541
AccII CGCG 1 cut(s) 772
AciI CCGC 3 cut(s) 183, 445, 539
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 5 cut(s) 102, 254, 458, 650, 854
AcvI CACGTG 1 cut(s) 284
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 2 cut(s) 6, 847
AfiI CCNNNNNNNGG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 3 cut(s) 86, 481, 781
AjiI CACGTC 1 cut(s) 839
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 4 cut(s) 142, 218, 335, 422
AluI AGCT 4 cut(s) 142, 218, 335, 422
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 3 cut(s) 29, 78, 176
ApoI RAATTY 5 cut(s) 102, 254, 458, 650, 854
AseI ATTAAT 1 cut(s) 690
Asp700I GAANNNNTTC 1 cut(s) 388
AspLEI GCGC 1 cut(s) 774
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 4 cut(s) 147, 505, 680, 833
AsuNHI GCTAGC 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 803
BalI TGGCCA 1 cut(s) 578
BbrPI CACGTG 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 639
BbvI GCAGC 3 cut(s) 16, 90, 163
BccI CCATC 3 cut(s) 289, 494, 725
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 117
BclI TGATCA 2 cut(s) 97, 406
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 429
BfuAI ACCTGC 3 cut(s) 34, 765, 841
BisI GCNGC 3 cut(s) 30, 79, 177
BlpI GCTNAGC 1 cut(s) 418
BlsI GCNGC 3 cut(s) 31, 80, 178
Bme1390I CCNGG 2 cut(s) 117, 351
BmeT110I CYCGRG 1 cut(s) 73
BmgBI CACGTC 1 cut(s) 839
BmiI GGNNCC 1 cut(s) 443
BmrFI CCNGG 2 cut(s) 117, 351
BmtI GCTAGC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 527
Bpu1102I GCTNAGC 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 243
Bse21I CCTNAGG 1 cut(s) 803
Bse3DI GCAATG 1 cut(s) 704
BseBI CCWGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 704
BseMII CTCAG 3 cut(s) 66, 520, 817
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 3 cut(s) 16, 90, 163
BsgI GTGCAG 3 cut(s) 35, 813, 819
Bsh1236I CGCG 1 cut(s) 772
BshFI GGCC 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 639
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 821
BsnI GGCC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 639
Bsp143I GATC 3 cut(s) 97, 145, 406
Bsp1720I GCTNAGC 1 cut(s) 418
BspACI CCGC 3 cut(s) 183, 445, 539
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 3 cut(s) 65, 519, 816
BspFNI CGCG 1 cut(s) 772
BspLI GGNNCC 1 cut(s) 443
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 3 cut(s) 34, 765, 841
BspOI GCTAGC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 704
BsrI ACTGG 1 cut(s) 243
BssMI GATC 3 cut(s) 97, 145, 406
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 845
Bst6I CTCTTC 2 cut(s) 360, 601
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 210, 220, 621
BstDEI CTNAG 4 cut(s) 52, 418, 506, 803
BstFNI CGCG 1 cut(s) 772
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 3 cut(s) 100, 148, 409
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 97, 145, 406
BstMWI GCNNNNNNNGC 3 cut(s) 35, 182, 428
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 115, 349
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 772
BstV1I GCAGC 3 cut(s) 16, 90, 163
Bsu36I CCTNAGG 1 cut(s) 803
BsuRI GGCC 1 cut(s) 578
BtrI CACGTC 1 cut(s) 839
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 4 cut(s) 236, 399, 438, 514
BveI ACCTGC 3 cut(s) 34, 765, 841
Cac8I GCNNGC 3 cut(s) 210, 220, 621
CfoI GCGC 1 cut(s) 774
Csp6I GTAC 2 cut(s) 5, 846
CviAII CATG 3 cut(s) 289, 310, 628
CviQI GTAC 2 cut(s) 5, 846
DdeI CTNAG 4 cut(s) 52, 418, 506, 803
DpnI GATC 3 cut(s) 99, 147, 408
DpnII GATC 3 cut(s) 97, 145, 406
DraIII CACNNNGTG 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 2 cut(s) 360, 601
EarI CTCTTC 2 cut(s) 360, 601
Eco32I GATATC 1 cut(s) 315
Eco72I CACGTG 1 cut(s) 284
Eco81I CCTNAGG 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 73
EcoRI GAATTC 2 cut(s) 254, 458
EcoRII CCWGG 1 cut(s) 115
EcoRV GATATC 1 cut(s) 315
FaeI CATG 3 cut(s) 292, 313, 631
FaqI GGGAC 1 cut(s) 821
FatI CATG 3 cut(s) 288, 309, 627
FauI CCCGC 1 cut(s) 190
FauNDI CATATG 2 cut(s) 581, 664
FbaI TGATCA 2 cut(s) 97, 406
Fnu4HI GCNGC 3 cut(s) 30, 79, 177
Fsp4HI GCNGC 3 cut(s) 30, 79, 177
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 773
GluI GCNGC 3 cut(s) 30, 79, 177
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 1 cut(s) 578
HapII CCGG 1 cut(s) 351
HhaI GCGC 1 cut(s) 774
Hin1II CATG 3 cut(s) 292, 313, 631
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 71, 477
HpaII CCGG 1 cut(s) 351
HphI GGTGA 4 cut(s) 147, 505, 680, 833
Hpy188I TCNGA 3 cut(s) 55, 228, 860
Hpy188III TCNNGA 1 cut(s) 544
HpyCH4III ACNGT 1 cut(s) 845
HpyCH4IV ACGT 4 cut(s) 283, 467, 810, 838
HpyCH4V TGCA 9 cut(s) 16, 32, 236, 323, 399, 431, 619, 830, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 182, 428
HpyF3I CTNAG 4 cut(s) 52, 418, 506, 803
HpySE526I ACGT 4 cut(s) 283, 467, 810, 838
Hsp92II CATG 3 cut(s) 292, 313, 631
HspAI GCGC 1 cut(s) 772
Ksp22I TGATCA 2 cut(s) 97, 406
Kzo9I GATC 3 cut(s) 97, 145, 406
LmnI GCTCC 3 cut(s) 184, 546, 642
Lsp1109I GCAGC 3 cut(s) 16, 90, 163
MaeI CTAG 1 cut(s) 209
MaeII ACGT 4 cut(s) 283, 467, 810, 838
MaeIII GTNAC 3 cut(s) 284, 511, 839
MalI GATC 3 cut(s) 99, 147, 408
MbiI CCGCTC 1 cut(s) 541
MboI GATC 3 cut(s) 97, 145, 406
MboII GAAGA 4 cut(s) 377, 467, 588, 772
MfeI CAATTG 1 cut(s) 748
MhlI GDGCHC 1 cut(s) 639
MlsI TGGCCA 1 cut(s) 578
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 4 cut(s) 458, 473, 524, 812
Mox20I TGGCCA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 388
MscI TGGCCA 1 cut(s) 578
MseI TTAA 4 cut(s) 342, 608, 690, 725
MslI CAYNNNNRTG 2 cut(s) 293, 632
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 117, 351
MunI CAATTG 1 cut(s) 748
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 772
MwoI GCNNNNNNNGC 3 cut(s) 35, 182, 428
NciI CCSGG 1 cut(s) 351
NdeI CATATG 2 cut(s) 581, 664
NdeII GATC 3 cut(s) 97, 145, 406
NheI GCTAGC 1 cut(s) 208
NlaIII CATG 3 cut(s) 292, 313, 631
NlaIV GGNNCC 1 cut(s) 443
NmuCI GTSAC 3 cut(s) 284, 511, 839
NspI RCATGY 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 73
PaqCI CACCTGC 1 cut(s) 841
PdmI GAANNNNTTC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 477
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 3 cut(s) 31, 80, 178
PleI GAGTC 1 cut(s) 65
PmaCI CACGTG 1 cut(s) 284
PmlI CACGTG 1 cut(s) 284
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 284
PshBI ATTAAT 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 115
PspCI CACGTG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 443
PspXI VCTCGAGB 1 cut(s) 73
PstI CTGCAG 1 cut(s) 433
RsaI GTAC 2 cut(s) 6, 847
RsaNI GTAC 2 cut(s) 5, 846
RseI CAYNNNNRTG 2 cut(s) 293, 632
SaqAI TTAA 4 cut(s) 342, 608, 690, 725
SatI GCNGC 3 cut(s) 30, 79, 177
Sau3AI GATC 3 cut(s) 97, 145, 406
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 117, 351
SduI GDGCHC 1 cut(s) 639
SfcI CTRYAG 1 cut(s) 429
Sfr274I CTCGAG 1 cut(s) 73
SlaI CTCGAG 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 293, 632
SmlI CTYRAG 2 cut(s) 73, 110
SmoI CTYRAG 2 cut(s) 73, 110
SsiI CCGC 3 cut(s) 183, 445, 539
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 115, 349
TaaI ACNGT 1 cut(s) 845
TaiI ACGT 4 cut(s) 286, 470, 813, 841
TaqI TCGA 1 cut(s) 74
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 4 cut(s) 342, 608, 690, 725
Tru9I TTAA 4 cut(s) 342, 608, 690, 725
TscAI CASTG 4 cut(s) 243, 406, 438, 514
TseFI GTSAC 3 cut(s) 284, 511, 839
TseI GCWGC 3 cut(s) 29, 78, 176
Tsp45I GTSAC 3 cut(s) 284, 511, 839
TspDTI ATGAA 3 cut(s) 460, 651, 693
TspRI CASTG 4 cut(s) 243, 406, 438, 514
Van91I CCANNNNNTGG 1 cut(s) 353
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 5 cut(s) 102, 254, 458, 650, 854
XceI RCATGY 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.