Rroxscaffold_4G00311750

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
34336570 .. 34337470
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311750.1

Sequence Viewer

Length: 453 bp
ATGCTGATTGCTGAGGACTTAGCTGAGCTGATGCTTGCAAAACCCGAATCGGTTACATTAAGGGTTCACGATACAGGAGACACGGTTTTTCACTTATGTGTTATATATAACCAAATAGAGTGCTTGAAACTACTGGTGGAAGAAGTAGGAGACAATAATAGAGACTTCCTGAGTGCTAGAGCTGGTTGTGATGGTGGTCTGAGCATCCTTGAATTAGCTATGATGCTTCGGCAACGTGAGTATATCATGAGAGATCGAAGGAATGAAAGTGAGCAACAGCCACCATTACCAAGCAAAAAAAACAAAGAAATAAGGAAAAAAGTGAAGGAAAGTGCAAAAAAGGTGATTGAGAAACGTAGTACAGGTGGGAATTGGGTGGACGAGAAACGCGGCATGCTGATGGTCGTGGCTACCATGATCTCGATCAACAATGACATTCCAAGCTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

17.03

Weight (kDa)

6.74

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 390
AfaI GTAC 1 cut(s) 361
AgsI TTSAA 2 cut(s) 127, 212
AleI CACNNNNGTG 1 cut(s) 96
AluBI AGCT 5 cut(s) 23, 28, 182, 218, 444
AluI AGCT 5 cut(s) 23, 28, 182, 218, 444
Alw26I GTCTC 3 cut(s) 72, 144, 156
ApeKI GCWGC 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 355
BbvCI CCTCAGC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 431
BccI CCATC 2 cut(s) 185, 394
BcoDI GTCTC 3 cut(s) 72, 144, 156
BfaI CTAG 1 cut(s) 177
BisI GCNGC 2 cut(s) 391, 445
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 2 cut(s) 392, 446
BmsI GCATC 3 cut(s) 21, 213, 213
Bpu10I CCTNAGC 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse1I ACTGG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 422
BseGI GGATG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 422
BseMII CTCAG 3 cut(s) 15, 161, 191
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 390
BsmAI GTCTC 3 cut(s) 72, 144, 156
Bsp143I GATC 3 cut(s) 253, 417, 423
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 1 cut(s) 390
BspCNI CTCAG 4 cut(s) 4, 16, 162, 192
BspFNI CGCG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 246
BsrI ACTGG 1 cut(s) 138
BssMI GATC 3 cut(s) 253, 417, 423
Bst4CI ACNGT 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 36, 395
BstDEI CTNAG 5 cut(s) 12, 19, 24, 170, 200
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 390
BstKTI GATC 3 cut(s) 256, 420, 426
BstMAI GTCTC 3 cut(s) 72, 144, 156
BstMBI GATC 3 cut(s) 253, 417, 423
BstNSI RCATGY 1 cut(s) 397
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 431
BtsCI GGATG 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 36, 395
CciI TCATGA 1 cut(s) 246
Csp6I GTAC 1 cut(s) 360
CviAII CATG 3 cut(s) 247, 394, 415
CviJI RGCY 7 cut(s) 23, 28, 182, 218, 280, 410, 444
CviKI_1 RGCY 7 cut(s) 23, 28, 182, 218, 280, 410, 444
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 5 cut(s) 12, 19, 24, 170, 200
DpnI GATC 3 cut(s) 255, 419, 425
DpnII GATC 3 cut(s) 253, 417, 423
FaeI CATG 3 cut(s) 250, 397, 418
FaiI YATR 9 cut(s) 97, 104, 106, 108, 221, 243, 248, 395, 416
FatI CATG 3 cut(s) 246, 393, 414
Fnu4HI GCNGC 2 cut(s) 391, 445
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 391, 445
FspBI CTAG 1 cut(s) 177
GluI GCNGC 2 cut(s) 391, 445
Hin1II CATG 3 cut(s) 250, 397, 418
HinfI GANTC 1 cut(s) 47
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 67, 379
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 4 cut(s) 68, 169, 247, 421
Hpy8I GTNNAC 2 cut(s) 67, 379
HpyAV CCTTC 2 cut(s) 252, 319
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 235, 355
HpyCH4V TGCA 3 cut(s) 38, 335, 447
HpyF3I CTNAG 5 cut(s) 12, 19, 24, 170, 200
HpySE526I ACGT 2 cut(s) 235, 355
Hsp92II CATG 3 cut(s) 250, 397, 418
Kzo9I GATC 3 cut(s) 253, 417, 423
LpnPI CCDG 5 cut(s) 60, 119, 168, 182, 348
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 3 cut(s) 21, 213, 213
MaeI CTAG 1 cut(s) 177
MaeII ACGT 2 cut(s) 235, 355
MaeIII GTNAC 1 cut(s) 52
MalI GATC 3 cut(s) 255, 419, 425
MboI GATC 3 cut(s) 253, 417, 423
MboII GAAGA 1 cut(s) 152
MluCI AATT 3 cut(s) 212, 370, 448
MnlI CCTC 1 cut(s) 7
MseI TTAA 2 cut(s) 59, 451
MslI CAYNNNNRTG 2 cut(s) 96, 398
MvnI CGCG 1 cut(s) 390
NdeII GATC 3 cut(s) 253, 417, 423
NlaIII CATG 3 cut(s) 250, 397, 418
NspI RCATGY 1 cut(s) 397
OliI CACNNNNGTG 1 cut(s) 96
PaeI GCATGC 1 cut(s) 397
PagI TCATGA 1 cut(s) 246
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 392, 446
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 2 cut(s) 96, 398
SaqAI TTAA 2 cut(s) 59, 451
SatI GCNGC 2 cut(s) 391, 445
Sau3AI GATC 3 cut(s) 253, 417, 423
SetI ASST 9 cut(s) 25, 30, 184, 220, 238, 345, 358, 367, 446
SfaNI GCATC 3 cut(s) 21, 213, 213
SmiMI CAYNNNNRTG 2 cut(s) 96, 398
SphI GCATGC 1 cut(s) 397
Sse9I AATT 3 cut(s) 212, 370, 448
SsiI CCGC 1 cut(s) 390
SspMI CTAG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 238, 358
TaqI TCGA 2 cut(s) 256, 422
TasI AATT 3 cut(s) 212, 370, 448
TatI WGTACW 1 cut(s) 359
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 59, 451
Tru9I TTAA 2 cut(s) 59, 451
TseI GCWGC 1 cut(s) 444
TspDTI ATGAA 1 cut(s) 279
XceI RCATGY 1 cut(s) 397
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.