MD12G1214700.v1.1

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000404
Physical Location & Seq
Forward (+)
29322980 .. 29324870
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1214700.v1.1.491

Sequence Viewer

Length: 825 bp
ATGTCTCTGACCATGTTAGATATCTTAGAGTACAGCAGCATTGCAAGAGATGAGTTTAGCAGAAGCTTAGAAATTCAACAGATTTTGATTGACGCGGGATTAATCAGAAGGGAAAATAATGAAAATGATAAGCCTAACTCAGATGTTGCCGCTGCTGCTGTTGTATCACCGAATCCAAGAAGGGTGAAGAAGAAAAAGAAGCTTCACAAACAAGTAGCATCATCGGAGAAGGGATCAACGCCGGCTAGGAGGTGCTGGATAAAATTGATGAAATGGTTGAGACATCCGAGTGATTGGGTGGTCGAGACACGTGGCATGCTGATGGTTGTGGCTACGATGATCTCGACCATGACATTTCAAGCCGCAGTTAACCCACCTAACCCACCTAATGATCCCGACAATTACTTCCCCGTTTTCATAACATACAATACCATCTCGTTCCTTGCTTCTTTGAGTGTCACCCTTTTGCTCGTTAGTGGATTTCCTCTCTACAATCGGTTCTGCACGTGGCTCTTATCGATGTCCATGTGCGTCACTCTCACATTCTTGGCACAAACCTACCTAATTTCGCTGTTTATGATCGTCCCTGGTACACCTACAAATACAACCTTAAACCTATACGTGATATCCGTTCTTACTTGGACTGCTTTGCTGGGCGTAGTCGGTATATTGGACACTATTCGGTTTCTTATTTGGCTGACGAAGCGGTTGCGGCCCATGTACTTGAGGTCAAAATCATGTCTCAAGAACATGATCACTACTGGCTCCTTTTCATGTAACGATGCAACGCGTTTTGAAGAGATTGATTCGCCTGCGGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

275

Amino Acids

30.96

Weight (kDa)

9.44

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 98 - 193 1.3e-09 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 95, 790
AciI CCGC 6 cut(s) 95, 150, 363, 706, 712, 815
AclWI GGATC 2 cut(s) 241, 386
AcsI RAATTY 1 cut(s) 72
AcvI CACGTG 2 cut(s) 311, 507
AfaI GTAC 3 cut(s) 32, 592, 722
AflIII ACRYGT 2 cut(s) 308, 788
AgsI TTSAA 3 cut(s) 77, 359, 797
AjnI CCWGG 1 cut(s) 586
AluBI AGCT 2 cut(s) 66, 202
AluI AGCT 2 cut(s) 66, 202
Alw26I GTCTC 4 cut(s) 9, 274, 299, 746
AlwI GGATC 2 cut(s) 241, 386
AoxI GGCC 1 cut(s) 713
ApeKI GCWGC 3 cut(s) 36, 152, 155
ApoI RAATTY 1 cut(s) 72
AseI ATTAAT 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 714
AsuHPI GGTGA 3 cut(s) 159, 196, 451
BbrPI CACGTG 2 cut(s) 311, 507
BbvI GCAGC 3 cut(s) 48, 139, 142
BccI CCATC 2 cut(s) 316, 440
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciT130I CCWGG 1 cut(s) 588
BclI TGATCA 1 cut(s) 753
BcoDI GTCTC 4 cut(s) 9, 274, 299, 746
BfaI CTAG 1 cut(s) 246
BisI GCNGC 6 cut(s) 37, 150, 153, 156, 363, 713
BlsI GCNGC 6 cut(s) 38, 151, 154, 157, 364, 714
Bme1390I CCNGG 1 cut(s) 588
BmgT120I GGNCC 1 cut(s) 714
BmiI GGNNCC 1 cut(s) 766
BmrFI CCNGG 1 cut(s) 588
BmsI GCATC 2 cut(s) 227, 772
BpuEI CTTGAG 2 cut(s) 728, 745
Bsa29I ATCGAT 1 cut(s) 518
BsaAI YACGTR 3 cut(s) 311, 507, 622
BsaJI CCNNGG 1 cut(s) 586
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 766
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 588
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 1 cut(s) 586
BseGI GGATG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 766
BseXI GCAGC 3 cut(s) 48, 139, 142
BseYI CCCAGC 1 cut(s) 652
BsgI GTGCAG 1 cut(s) 487
Bsh1236I CGCG 2 cut(s) 95, 790
BshFI GGCC 1 cut(s) 715
BshVI ATCGAT 1 cut(s) 518
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 569
BsmAI GTCTC 4 cut(s) 9, 274, 299, 746
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 1 cut(s) 715
Bsp143I GATC 5 cut(s) 233, 339, 391, 579, 753
BspACI CCGC 6 cut(s) 95, 150, 363, 706, 712, 815
BspANI GGCC 1 cut(s) 715
BspCNI CTCAG 1 cut(s) 152
BspDI ATCGAT 1 cut(s) 518
BspFNI CGCG 2 cut(s) 95, 790
BspLI GGNNCC 1 cut(s) 766
BspPI GGATC 2 cut(s) 241, 386
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 1 cut(s) 766
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 586
BssMI GATC 5 cut(s) 233, 339, 391, 579, 753
Bst2UI CCWGG 1 cut(s) 588
Bst6I CTCTTC 1 cut(s) 792
BstBAI YACGTR 3 cut(s) 311, 507, 622
BstC8I GCNNGC 3 cut(s) 243, 317, 813
BstDEI CTNAG 3 cut(s) 25, 67, 139
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 2 cut(s) 95, 790
BstKTI GATC 5 cut(s) 236, 342, 394, 582, 756
BstMAI GTCTC 4 cut(s) 9, 274, 299, 746
BstMBI GATC 5 cut(s) 233, 339, 391, 579, 753
BstMWI GCNNNNNNNGC 3 cut(s) 155, 703, 712
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 586
BstUI CGCG 2 cut(s) 95, 790
BstV1I GCAGC 3 cut(s) 48, 139, 142
Bsu15I ATCGAT 1 cut(s) 518
BsuRI GGCC 1 cut(s) 715
BsuTUI ATCGAT 1 cut(s) 518
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 243, 317, 813
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 714
ClaI ATCGAT 1 cut(s) 518
CseI GACGC 2 cut(s) 101, 520
Csp6I GTAC 3 cut(s) 31, 591, 721
CviAII CATG 8 cut(s) 13, 316, 349, 526, 718, 738, 751, 774
CviQI GTAC 3 cut(s) 31, 591, 721
DdeI CTNAG 3 cut(s) 25, 67, 139
DpnI GATC 5 cut(s) 235, 341, 393, 581, 755
DpnII GATC 5 cut(s) 233, 339, 391, 579, 753
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco32I GATATC 2 cut(s) 22, 627
Eco72I CACGTG 2 cut(s) 311, 507
EcoRII CCWGG 1 cut(s) 586
EcoRV GATATC 2 cut(s) 22, 627
FaeI CATG 8 cut(s) 16, 319, 352, 529, 721, 741, 754, 777
FaqI GGGAC 1 cut(s) 569
FatI CATG 8 cut(s) 12, 315, 348, 525, 717, 737, 750, 773
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 753
Fnu4HI GCNGC 6 cut(s) 37, 150, 153, 156, 363, 713
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 6 cut(s) 37, 150, 153, 156, 363, 713
FspBI CTAG 1 cut(s) 246
GluI GCNGC 6 cut(s) 37, 150, 153, 156, 363, 713
GsaI CCCAGC 1 cut(s) 656
HaeIII GGCC 1 cut(s) 715
HapII CCGG 1 cut(s) 242
HgaI GACGC 2 cut(s) 101, 520
Hin1II CATG 8 cut(s) 16, 319, 352, 529, 721, 741, 754, 777
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 2 cut(s) 64, 200
HinfI GANTC 2 cut(s) 172, 806
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 1 cut(s) 242
HphI GGTGA 3 cut(s) 159, 196, 451
Hpy166II GTNNAC 2 cut(s) 370, 593
Hpy188I TCNGA 5 cut(s) 9, 107, 142, 226, 288
Hpy188III TCNNGA 4 cut(s) 304, 343, 395, 745
Hpy8I GTNNAC 2 cut(s) 370, 593
HpyAV CCTTC 3 cut(s) 102, 174, 223
HpyCH4IV ACGT 3 cut(s) 310, 506, 621
HpyCH4V TGCA 3 cut(s) 44, 504, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 703, 712
HpyF3I CTNAG 3 cut(s) 25, 67, 139
HpySE526I ACGT 3 cut(s) 310, 506, 621
Hsp92II CATG 8 cut(s) 16, 319, 352, 529, 721, 741, 754, 777
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 753
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 5 cut(s) 233, 339, 391, 579, 753
LmnI GCTCC 1 cut(s) 770
LpnPI CCDG 6 cut(s) 241, 255, 573, 600, 638, 747
Lsp1109I GCAGC 3 cut(s) 48, 139, 142
LweI GCATC 2 cut(s) 227, 772
MaeI CTAG 1 cut(s) 246
MaeII ACGT 3 cut(s) 310, 506, 621
MaeIII GTNAC 3 cut(s) 457, 532, 776
MalI GATC 5 cut(s) 235, 341, 393, 581, 755
MboI GATC 5 cut(s) 233, 339, 391, 579, 753
MboII GAAGA 3 cut(s) 199, 202, 809
MluCI AATT 4 cut(s) 72, 263, 400, 564
MluI ACGCGT 1 cut(s) 788
MnlI CCTC 3 cut(s) 243, 495, 720
MroNI GCCGGC 1 cut(s) 241
MseI TTAA 3 cut(s) 101, 369, 611
MslI CAYNNNNRTG 2 cut(s) 288, 320
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 588
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 2 cut(s) 95, 790
MwoI GCNNNNNNNGC 3 cut(s) 155, 703, 712
NaeI GCCGGC 1 cut(s) 243
NdeII GATC 5 cut(s) 233, 339, 391, 579, 753
NgoMIV GCCGGC 1 cut(s) 241
NlaIII CATG 8 cut(s) 16, 319, 352, 529, 721, 741, 754, 777
NlaIV GGNNCC 1 cut(s) 766
NmuCI GTSAC 2 cut(s) 457, 532
NspI RCATGY 1 cut(s) 319
PaeI GCATGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 2 cut(s) 341, 627
PdiI GCCGGC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 172, 806
PkrI GCNGC 6 cut(s) 38, 151, 154, 157, 364, 714
PmaCI CACGTG 2 cut(s) 311, 507
PmlI CACGTG 2 cut(s) 311, 507
Ppu21I YACGTR 3 cut(s) 311, 507, 622
PshBI ATTAAT 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 586
PspCI CACGTG 2 cut(s) 311, 507
PspFI CCCAGC 1 cut(s) 652
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 1 cut(s) 766
PspPI GGNCC 1 cut(s) 714
RsaI GTAC 3 cut(s) 32, 592, 722
RsaNI GTAC 3 cut(s) 31, 591, 721
RseI CAYNNNNRTG 2 cut(s) 288, 320
SaqAI TTAA 3 cut(s) 101, 369, 611
SatI GCNGC 6 cut(s) 37, 150, 153, 156, 363, 713
Sau3AI GATC 5 cut(s) 233, 339, 391, 579, 753
Sau96I GGNCC 1 cut(s) 714
ScrFI CCNGG 1 cut(s) 588
SfaNI GCATC 2 cut(s) 227, 772
SmiMI CAYNNNNRTG 2 cut(s) 288, 320
SmlI CTYRAG 2 cut(s) 724, 743
SmoI CTYRAG 2 cut(s) 724, 743
SphI GCATGC 1 cut(s) 319
Sse9I AATT 4 cut(s) 72, 263, 400, 564
SsiI CCGC 6 cut(s) 95, 150, 363, 706, 712, 815
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 586
TaiI ACGT 3 cut(s) 313, 509, 624
TaqI TCGA 3 cut(s) 303, 344, 518
TasI AATT 4 cut(s) 72, 263, 400, 564
TatI WGTACW 2 cut(s) 30, 720
TauI GCSGC 3 cut(s) 152, 365, 715
TfiI GAWTC 2 cut(s) 172, 806
Tru1I TTAA 3 cut(s) 101, 369, 611
Tru9I TTAA 3 cut(s) 101, 369, 611
TseFI GTSAC 2 cut(s) 457, 532
TseI GCWGC 3 cut(s) 36, 152, 155
Tsp45I GTSAC 2 cut(s) 457, 532
TspDTI ATGAA 4 cut(s) 135, 284, 406, 762
TspGWI ACGGA 1 cut(s) 619
VspI ATTAAT 1 cut(s) 101
XapI RAATTY 1 cut(s) 72
XceI RCATGY 1 cut(s) 319
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.