Rroxscaffold_4G00311670

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000404
Physical Location & Seq
Forward (+)
34196396 .. 34198972
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311670.1

Sequence Viewer

Length: 867 bp
ATGGAGGTTAGAGAAGACCACCATGAAGACGATACAACAAAAGCACTCTATGAGGCAGCAGTTGCAGGCTCAGTATCATCTTTTGAAACATTGATCCAGAGAGACCCTCTCATCCTTGACGAAGTTTCACTCACTCACTTCAGTGAAACTCCCCTCCACATCTCAGCTCTGCTCGGCAACATTGATTTCACCAAGGCTATTCTTACCCATAACTGGAGACTTGCCACCGTGAGGGACTCCTTGAAACGCCTGCTGCTTCTCTTGGCAGCTGCCGAGGGCCAAAAGGAGATTGTTCAAGCTCTTCTGAAAGCCTACCCGGCCGCTTGCTTGTTTCCTGATCAAGGAGACACGGTTTTCCACTTATGTGTTACTTATAACCAATTAGAATGCTTGAAGCTATTGGTGAAAGAGGCAGGGGACAATACAGACCTCCTCAATGCTAGAGCTGGATGCGATGGTGGTATGACCATCCTCGAATTAGCTGTGATGCTAAGGCAAACTGAGACAATAAAATACTTGCGCTCGCTACCTGTTGTAAGAGCAAAAGCAAAGAAAGATGGAAAAAAGGGAAGGAAAAGTGAAAATAAGGTGAATGAGAAATGCTCTAACAGTGGGACTTGGGTGGAAGAGAAACGCGGCATGCTGATGGTTGTGGCTACCATGATCTCAACAATGACATTCCAAGCTACAATTAACCCACCAGGTGGGTTCTGGCAAGAAATGAACACCAATTCGACTTTTGATGGAGCAACTATTTGCGATGTAATAAACCCTTGTGTTGCCGGAACTGCAGTCTCAAGCTACATACATAAAGATTACTTCAACAACTTCCAGACTTACAATGCCATATGCTTCCTTTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

288

Amino Acids

31.96

Weight (kDa)

5.83

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 103 1.9e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 86 - 174 9.8e-11 Ankyrin repeats (3 copies)
PGG PF13962 207 - 285 1.4e-11 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccB7I CCANNNNNTGG 1 cut(s) 704
AccII CGCG 1 cut(s) 636
AciI CCGC 2 cut(s) 321, 636
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 124
AdeI CACNNNGTG 1 cut(s) 704
AfiI CCNNNNNNNGG 4 cut(s) 213, 231, 341, 704
AgsI TTSAA 5 cut(s) 86, 244, 296, 394, 823
AjnI CCWGG 1 cut(s) 700
AleI CACNNNNGTG 2 cut(s) 141, 363
AluBI AGCT 8 cut(s) 167, 269, 299, 397, 446, 482, 686, 801
AluI AGCT 8 cut(s) 167, 269, 299, 397, 446, 482, 686, 801
Alw26I GTCTC 5 cut(s) 96, 211, 339, 497, 799
AlwI GGATC 1 cut(s) 88
AoxI GGCC 2 cut(s) 277, 318
ApeKI GCWGC 4 cut(s) 56, 253, 266, 269
AspLEI GCGC 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 181, 415, 601
BbsI GAAGAC 2 cut(s) 21, 33
BbvI GCAGC 4 cut(s) 68, 240, 256, 278
BccI CCATC 5 cut(s) 449, 476, 551, 640, 737
BciT130I CCWGG 1 cut(s) 702
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 5 cut(s) 96, 211, 339, 497, 799
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 789
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 6 cut(s) 57, 254, 267, 270, 321, 637
BlsI GCNGC 6 cut(s) 58, 255, 268, 271, 322, 638
Bme1390I CCNGG 2 cut(s) 317, 702
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 317, 702
BmsI GCATC 2 cut(s) 440, 477
BpiI GAAGAC 2 cut(s) 21, 33
BplI GAGNNNNNCTC 6 cut(s) 91, 123, 93, 125, 587, 619
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 781
BpuMI CCSGG 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 192, 273
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 231, 341, 704
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 192, 273
BseGI GGATG 3 cut(s) 111, 455, 468
BseLI CCNNNNNNNGG 4 cut(s) 213, 231, 341, 704
BseMII CTCAG 3 cut(s) 84, 177, 492
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 4 cut(s) 68, 240, 256, 278
Bsh1236I CGCG 1 cut(s) 636
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 279, 320
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 317, 783
BslFI GGGAC 3 cut(s) 248, 431, 628
BslI CCNNNNNNNGG 4 cut(s) 213, 231, 341, 704
BsmAI GTCTC 5 cut(s) 96, 211, 339, 497, 799
BsmFI GGGAC 3 cut(s) 248, 431, 628
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 2 cut(s) 279, 320
Bso31I GGTCTC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 93, 337, 663
BspACI CCGC 2 cut(s) 321, 636
BspANI GGCC 2 cut(s) 279, 320
BspCNI CTCAG 3 cut(s) 83, 176, 493
BspFNI CGCG 1 cut(s) 636
BspMAI CTGCAG 1 cut(s) 793
BspPI GGATC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 192, 273
BssMI GATC 3 cut(s) 93, 337, 663
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 3 cut(s) 229, 352, 611
Bst6I CTCTTC 2 cut(s) 306, 621
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 5 cut(s) 67, 251, 325, 524, 641
BstDEI CTNAG 4 cut(s) 70, 163, 491, 501
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 3 cut(s) 111, 455, 468
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 522
BstKTI GATC 3 cut(s) 96, 340, 666
BstMAI GTCTC 5 cut(s) 96, 211, 339, 497, 799
BstMBI GATC 3 cut(s) 93, 337, 663
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 3 cut(s) 62, 317, 788
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 2 cut(s) 315, 700
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 4 cut(s) 68, 240, 256, 278
BstV2I GAAGAC 2 cut(s) 21, 33
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 279, 320
BtgZI GCGATG 2 cut(s) 468, 774
BtsCI GGATG 3 cut(s) 111, 455, 468
BtsIMutI CAGTG 2 cut(s) 148, 616
Cac8I GCNNGC 5 cut(s) 67, 251, 325, 524, 641
CfoI GCGC 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 277
CsiI ACCWGGT 1 cut(s) 700
CviAII CATG 3 cut(s) 23, 640, 661
DdeI CTNAG 4 cut(s) 70, 163, 491, 501
DpnI GATC 3 cut(s) 95, 339, 665
DpnII GATC 3 cut(s) 93, 337, 663
DraIII CACNNNGTG 1 cut(s) 704
EaeI YGGCCR 1 cut(s) 318
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 306, 621
EarI CTCTTC 2 cut(s) 306, 621
EclXI CGGCCG 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 96
Eco52I CGGCCG 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 3 cut(s) 26, 643, 664
FaqI GGGAC 3 cut(s) 248, 431, 628
FatI CATG 3 cut(s) 22, 639, 660
FauNDI CATATG 1 cut(s) 848
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 6 cut(s) 57, 254, 267, 270, 321, 637
FokI GGATG 3 cut(s) 98, 455, 462
Fsp4HI GCNGC 6 cut(s) 57, 254, 267, 270, 321, 637
FspBI CTAG 1 cut(s) 441
GlaI GCGC 1 cut(s) 521
GluI GCNGC 6 cut(s) 57, 254, 267, 270, 321, 637
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 2 cut(s) 279, 320
HapII CCGG 2 cut(s) 317, 783
HhaI GCGC 1 cut(s) 522
Hin1II CATG 3 cut(s) 26, 643, 664
Hin6I GCGC 1 cut(s) 520
HinP1I GCGC 1 cut(s) 520
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 317, 783
HphI GGTGA 3 cut(s) 181, 415, 601
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 97, 335, 832
HpyAV CCTTC 1 cut(s) 564
HpyCH4III ACNGT 3 cut(s) 229, 352, 611
HpyCH4V TGCA 2 cut(s) 65, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 317, 788
HpyF3I CTNAG 4 cut(s) 70, 163, 491, 501
Hsp92II CATG 3 cut(s) 26, 643, 664
HspAI GCGC 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 3 cut(s) 93, 337, 663
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 4 cut(s) 68, 240, 256, 278
LweI GCATC 2 cut(s) 440, 477
MabI ACCWGGT 1 cut(s) 700
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 367
MalI GATC 3 cut(s) 95, 339, 665
MboI GATC 3 cut(s) 93, 337, 663
MboII GAAGA 4 cut(s) 26, 38, 293, 638
MluCI AATT 4 cut(s) 380, 476, 690, 730
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 9 cut(s) 46, 117, 164, 225, 268, 403, 440, 443, 482
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 3 cut(s) 141, 363, 644
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 317, 783
MspR9I CCNGG 2 cut(s) 317, 702
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 1 cut(s) 702
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 3 cut(s) 62, 317, 788
NciI CCSGG 1 cut(s) 317
NdeI CATATG 1 cut(s) 848
NdeII GATC 3 cut(s) 93, 337, 663
NlaIII CATG 3 cut(s) 26, 643, 664
NmeAIII GCCGAG 2 cut(s) 153, 298
NspI RCATGY 1 cut(s) 643
OliI CACNNNNGTG 2 cut(s) 141, 363
PaeI GCATGC 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 306
PctI GAATGC 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 704
PkrI GCNGC 6 cut(s) 58, 255, 268, 271, 322, 638
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PsiI TTATAA 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 700
PspGI CCWGG 1 cut(s) 700
PspPI GGNCC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 3 cut(s) 141, 363, 644
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 6 cut(s) 57, 254, 267, 270, 321, 637
Sau3AI GATC 3 cut(s) 93, 337, 663
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 317, 702
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 2 cut(s) 440, 477
SfcI CTRYAG 1 cut(s) 789
SmiMI CAYNNNNRTG 3 cut(s) 141, 363, 644
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SphI GCATGC 1 cut(s) 643
Sse9I AATT 4 cut(s) 380, 476, 690, 730
SsiI CCGC 2 cut(s) 321, 636
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 315, 700
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 3 cut(s) 229, 352, 611
TaqI TCGA 2 cut(s) 474, 734
TasI AATT 4 cut(s) 380, 476, 690, 730
TauI GCSGC 2 cut(s) 323, 639
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 2 cut(s) 148, 616
TseI GCWGC 4 cut(s) 56, 253, 266, 269
TspDTI ATGAA 2 cut(s) 39, 737
TspRI CASTG 2 cut(s) 148, 616
Van91I CCANNNNNTGG 1 cut(s) 704
XagI CCTNNNNNAGG 1 cut(s) 339
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 708
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.