Rw0G007830

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00288
Physical Location & Seq
Forward (+)
6124 .. 7851
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007830.1

Sequence Viewer

Length: 1311 bp
ATGGCTACTAGACAAGATGAAGGAGACGCAATAGAGCTAGTCTACAAGGCAGCAGTTGCGGGGTGCGTATCTACCTTAAACAAATTGATCGAAACAAGCCCACTCATTCTTAGAAAGTTTTCTTTGACTACTTTCACTGAAACTCCCTTGCATGTATCTGCTTTGCTCGGCCACCATGACTTTACCAGAACCCTTCTCACTCATAATCCCAACCTCGCGAAGGAGTTGGACTCTTACAGACGCTCACCTCTCCACTTGGCTTCTGCCGAGGGCCACGAGGAGATCGTTCAATTACATGCAGATCATGTCGATATCAAGAGAACGGCTTTGCACTTGTGTGTTAAATATAATCAATTGGAGTGCTTGAAACTGTTAGTCGAACATGTGGTCGAACATGTGGGTGAACAAAAATCAGAATTCCTCAACTCAAAAGACACTGTTGGGGGCCAGACTATCCTGCACCTAGCTTTGGTTCTGAAGCAAACTGAGACAATAAGGTACCTGCTTTCTATACCTATTATACGAGAAAAAGCAAATGATGTGATCAGATCTTATGTCTTGGAGCACAACTCAGGAGATAGTAGAAATCTTGAACTTCAAAAAATTGTGATCGGCCACAACGATGACCACCACCATCAGCAACCATTGTCATCTGTACCGCCAGGAACGACTGCTAATGTTCTTGACAACAATGCAGCGGAAAAAGTGTCGAAGGCAAGTTGGAGGACCAAGCTAATGAAATACCCAACTGATTGGCTGGAAGAAACCCGTGGCATGCTGATTGTTGTGGCCGGCATGATCGCAACGATGACTTTCCAAGCTGCAGTTAATCCACCCGGTGGTGTTTGGCAAGAAAATAATACGAATTCTACAGATAATAATTCTGGATTTCCTTCCTGCACCGAGTCACAGATATGTTACGCTGGAACGGCAGTTTTAGCCTATGGCATGGACAAGGCATCTTACTTCGACCTGTTCATGAATTTCAATACCATCTCCTTCCTTGCTTCTTTGAGTGTTACTCTTTTACTTATTAGCGGTTTTCCTCTCCATAACCGGCTTTGTATGTGGCTCTTATCAATGGGTATGTGTATCGTTCTCTCTTGCCTGGCACTAAGCTATCTAATTATTGTGAACATGATCATCCCTAATCAGCCTTTCGATCTATATAAGAGTACTACTTACAATATTATTATCATCTGCGTTTGGATTTTGTTGCTGCTTGCCATGGTCGTTTTAATCCACACACTTCGCGTTTTCATTTGGCTGGGGAAGAGGCTGCGTGATCGTCGCAGATTCAGACATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

49.09

Weight (kDa)

7.05

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 98 9.8e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 104 - 170 5.5e-09 Ankyrin repeats (3 copies)
PGG PF13962 251 - 375 4.1e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 510
Acc65I GGTACC 1 cut(s) 498
AccB1I GGYRCC 1 cut(s) 498
AccB7I CCANNNNNTGG 1 cut(s) 839
AccI GTMKAC 1 cut(s) 42
AccII CGCG 2 cut(s) 218, 1254
AciI CCGC 4 cut(s) 59, 659, 698, 1038
AcoI YGGCCR 3 cut(s) 169, 613, 789
AcsI RAATTY 3 cut(s) 416, 865, 982
AcuI CTGAAG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 839
AfaI GTAC 3 cut(s) 500, 657, 1177
AfiI CCNNNNNNNGG 3 cut(s) 220, 469, 839
AflIII ACRYGT 2 cut(s) 382, 394
AgsI TTSAA 5 cut(s) 290, 367, 593, 599, 988
AjnI CCWGG 2 cut(s) 661, 1107
AleI CACNNNNGTG 1 cut(s) 336
AluBI AGCT 5 cut(s) 37, 467, 733, 821, 1119
AluI AGCT 5 cut(s) 37, 467, 733, 821, 1119
Alw21I GWGCWC 1 cut(s) 567
Alw26I GTCTC 2 cut(s) 18, 482
AoxI GGCC 5 cut(s) 169, 271, 445, 613, 789
ApeKI GCWGC 5 cut(s) 50, 695, 821, 1219, 1279
ApoI RAATTY 3 cut(s) 416, 865, 982
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
Asp700I GAANNNNTTC 1 cut(s) 118
Asp718I GGTACC 1 cut(s) 498
AspS9I GGNCC 3 cut(s) 271, 445, 726
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 2 cut(s) 237, 413
AvaII GGWCC 1 cut(s) 726
BanI GGYRCC 1 cut(s) 498
BauI CACGAG 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 567
BbvI GCAGC 5 cut(s) 62, 707, 808, 1206, 1266
BccI CCATC 2 cut(s) 642, 1001
BceAI ACGGC 2 cut(s) 339, 945
BciT130I CCWGG 2 cut(s) 663, 1109
BclI TGATCA 2 cut(s) 543, 1140
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 18, 482
BfaI CTAG 3 cut(s) 9, 38, 464
BfmI CTRYAG 2 cut(s) 822, 870
BfuAI ACCTGC 1 cut(s) 510
BglII AGATCT 1 cut(s) 548
BisI GCNGC 5 cut(s) 51, 696, 822, 1220, 1280
BlsI GCNGC 5 cut(s) 52, 697, 823, 1221, 1281
BmcAI AGTACT 1 cut(s) 1177
Bme1390I CCNGG 3 cut(s) 663, 837, 1109
Bme18I GGWCC 1 cut(s) 726
BmgT120I GGNCC 3 cut(s) 271, 445, 726
BmiI GGNNCC 2 cut(s) 446, 500
BmrFI CCNGG 3 cut(s) 663, 837, 1109
BmsI GCATC 1 cut(s) 968
BplI GAGNNNNNCTC 6 cut(s) 215, 247, 554, 586, 1006, 1038
BpuMI CCSGG 1 cut(s) 837
BsaJI CCNNGG 3 cut(s) 267, 769, 1227
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 469, 839
Bse118I RCCGGY 2 cut(s) 791, 1056
BseBI CCWGG 2 cut(s) 663, 1109
BseDI CCNNGG 3 cut(s) 267, 769, 1227
BseGI GGATG 1 cut(s) 1143
BseLI CCNNNNNNNGG 3 cut(s) 220, 469, 839
BseMII CTCAG 2 cut(s) 477, 585
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 5 cut(s) 62, 707, 808, 1206, 1266
BseYI CCCAGC 1 cut(s) 1267
BsgI GTGCAG 2 cut(s) 443, 883
Bsh1236I CGCG 2 cut(s) 218, 1254
BshFI GGCC 5 cut(s) 171, 273, 447, 615, 791
BshNI GGYRCC 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 567
BsiSI CCGG 3 cut(s) 792, 837, 1057
BslI CCNNNNNNNGG 3 cut(s) 220, 469, 839
BsmAI GTCTC 2 cut(s) 18, 482
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 5 cut(s) 171, 273, 447, 615, 791
Bsp1286I GDGCHC 1 cut(s) 567
Bsp19I CCATGG 1 cut(s) 1227
Bsp68I TCGCGA 1 cut(s) 218
BspACI CCGC 4 cut(s) 59, 659, 698, 1038
BspANI GGCC 5 cut(s) 171, 273, 447, 615, 791
BspCNI CTCAG 2 cut(s) 478, 584
BspFNI CGCG 2 cut(s) 218, 1254
BspHI TCATGA 1 cut(s) 978
BspLI GGNNCC 2 cut(s) 446, 500
BspMAI CTGCAG 1 cut(s) 826
BspMI ACCTGC 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 498
BsrFI RCCGGY 2 cut(s) 791, 1056
BssAI RCCGGY 2 cut(s) 791, 1056
BssECI CCNNGG 3 cut(s) 267, 769, 1227
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 1227
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 663, 1109
Bst4CI ACNGT 2 cut(s) 372, 439
Bst6I CTCTTC 1 cut(s) 1268
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 776, 793, 1224
BstDEI CTNAG 4 cut(s) 110, 486, 571, 1115
BstDSI CCRYGG 2 cut(s) 769, 1227
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 1143
BstFNI CGCG 2 cut(s) 218, 1254
BstMAI GTCTC 2 cut(s) 18, 482
BstMWI GCNNNNNNNGC 3 cut(s) 56, 929, 938
BstNI CCWGG 2 cut(s) 663, 1109
BstNSI RCATGY 5 cut(s) 155, 299, 386, 398, 778
BstSCI CCNGG 3 cut(s) 661, 835, 1107
BstSFI CTRYAG 2 cut(s) 822, 870
BstUI CGCG 2 cut(s) 218, 1254
BstV1I GCAGC 5 cut(s) 62, 707, 808, 1206, 1266
BstX2I RGATCY 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 753
BstYI RGATCY 1 cut(s) 548
BsuRI GGCC 5 cut(s) 171, 273, 447, 615, 791
BtgI CCRYGG 2 cut(s) 769, 1227
BtsCI GGATG 1 cut(s) 1143
BtsIMutI CAGTG 2 cut(s) 135, 435
BtuMI TCGCGA 1 cut(s) 218
BveI ACCTGC 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 776, 793, 1224
CciI TCATGA 1 cut(s) 978
Cfr10I RCCGGY 2 cut(s) 791, 1056
Cfr13I GGNCC 3 cut(s) 271, 445, 726
CseI GACGC 2 cut(s) 35, 249
Csp6I GTAC 3 cut(s) 499, 656, 1176
CviQI GTAC 3 cut(s) 499, 656, 1176
DdeI CTNAG 4 cut(s) 110, 486, 571, 1115
DraIII CACNNNGTG 1 cut(s) 839
EaeI YGGCCR 3 cut(s) 169, 613, 789
Eam1104I CTCTTC 1 cut(s) 1268
EarI CTCTTC 1 cut(s) 1268
Eco130I CCWWGG 1 cut(s) 1227
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoRI GAATTC 2 cut(s) 416, 865
EcoRII CCWGG 2 cut(s) 661, 1107
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 1227
ErhI CCWWGG 1 cut(s) 1227
Esp3I CGTCTC 1 cut(s) 18
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 2 cut(s) 543, 1140
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 5 cut(s) 51, 696, 822, 1220, 1280
FokI GGATG 1 cut(s) 1130
Fsp4HI GCNGC 5 cut(s) 51, 696, 822, 1220, 1280
FspBI CTAG 3 cut(s) 9, 38, 464
GluI GCNGC 5 cut(s) 51, 696, 822, 1220, 1280
GsaI CCCAGC 1 cut(s) 1271
HaeIII GGCC 5 cut(s) 171, 273, 447, 615, 791
HapII CCGG 3 cut(s) 792, 837, 1057
HgaI GACGC 2 cut(s) 35, 249
HinfI GANTC 3 cut(s) 230, 905, 1296
HpaII CCGG 3 cut(s) 792, 837, 1057
HphI GGTGA 2 cut(s) 237, 413
Hpy166II GTNNAC 3 cut(s) 43, 404, 1135
Hpy188I TCNGA 4 cut(s) 415, 477, 548, 1301
Hpy188III TCNNGA 7 cut(s) 217, 316, 573, 590, 683, 885, 979
Hpy8I GTNNAC 3 cut(s) 43, 404, 1135
Hpy99I CGWCG 1 cut(s) 1293
HpyAV CCTTC 6 cut(s) 14, 203, 214, 706, 903, 1009
HpyCH4III ACNGT 2 cut(s) 372, 439
HpyCH4V TGCA 7 cut(s) 151, 299, 331, 460, 695, 824, 900
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 929, 938
HpyF3I CTNAG 4 cut(s) 110, 486, 571, 1115
KpnI GGTACC 1 cut(s) 502
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
Ksp22I TGATCA 2 cut(s) 543, 1140
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 5 cut(s) 62, 707, 808, 1206, 1266
LweI GCATC 1 cut(s) 968
MaeI CTAG 3 cut(s) 9, 38, 464
MaeIII GTNAC 3 cut(s) 906, 917, 1018
MboII GAAGA 2 cut(s) 773, 1285
MfeI CAATTG 1 cut(s) 353
MflI RGATCY 1 cut(s) 548
MhlI GDGCHC 1 cut(s) 567
MlyI GAGTC 2 cut(s) 224, 914
MmeI TCCRAC 2 cut(s) 207, 701
MnlI CCTC 8 cut(s) 224, 258, 262, 271, 431, 717, 1056, 1269
MroNI GCCGGC 1 cut(s) 791
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 5 cut(s) 77, 342, 828, 1238, 1309
MslI CAYNNNNRTG 4 cut(s) 336, 399, 621, 913
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 3 cut(s) 792, 837, 1057
MspR9I CCNGG 3 cut(s) 663, 837, 1109
MunI CAATTG 1 cut(s) 353
MvaI CCWGG 2 cut(s) 663, 1109
MvnI CGCG 2 cut(s) 218, 1254
MwoI GCNNNNNNNGC 3 cut(s) 56, 929, 938
NaeI GCCGGC 1 cut(s) 793
NciI CCSGG 1 cut(s) 837
NcoI CCATGG 1 cut(s) 1227
NgoMIV GCCGGC 1 cut(s) 791
NlaIV GGNNCC 2 cut(s) 446, 500
NmeAIII GCCGAG 2 cut(s) 147, 292
NmuCI GTSAC 1 cut(s) 906
NruI TCGCGA 1 cut(s) 218
NspI RCATGY 5 cut(s) 155, 299, 386, 398, 778
OliI CACNNNNGTG 1 cut(s) 336
PaeI GCATGC 1 cut(s) 778
PagI TCATGA 1 cut(s) 978
PciI ACATGT 2 cut(s) 382, 394
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 618
PdiI GCCGGC 1 cut(s) 793
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 1296
PflMI CCANNNNNTGG 1 cut(s) 839
PkrI GCNGC 5 cut(s) 52, 697, 823, 1221, 1281
PleI GAGTC 2 cut(s) 224, 913
PpsI GAGTC 2 cut(s) 224, 913
PscI ACATGT 2 cut(s) 382, 394
Psp6I CCWGG 2 cut(s) 661, 1107
PspFI CCCAGC 1 cut(s) 1267
PspGI CCWGG 2 cut(s) 661, 1107
PspN4I GGNNCC 2 cut(s) 446, 500
PspPI GGNCC 3 cut(s) 271, 445, 726
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 1 cut(s) 548
RruI TCGCGA 1 cut(s) 218
RsaI GTAC 3 cut(s) 500, 657, 1177
RsaNI GTAC 3 cut(s) 499, 656, 1176
RseI CAYNNNNRTG 4 cut(s) 336, 399, 621, 913
SaqAI TTAA 5 cut(s) 77, 342, 828, 1238, 1309
SatI GCNGC 5 cut(s) 51, 696, 822, 1220, 1280
Sau96I GGNCC 3 cut(s) 271, 445, 726
ScaI AGTACT 1 cut(s) 1177
SchI GAGTC 2 cut(s) 224, 914
ScrFI CCNGG 3 cut(s) 663, 837, 1109
SduI GDGCHC 1 cut(s) 567
SfaNI GCATC 1 cut(s) 968
SfcI CTRYAG 2 cut(s) 822, 870
SinI GGWCC 1 cut(s) 726
SmiMI CAYNNNNRTG 4 cut(s) 336, 399, 621, 913
SphI GCATGC 1 cut(s) 778
SsiI CCGC 4 cut(s) 59, 659, 698, 1038
SspI AATATT 1 cut(s) 1189
SspMI CTAG 3 cut(s) 9, 38, 464
StyD4I CCNGG 3 cut(s) 661, 835, 1107
StyI CCWWGG 1 cut(s) 1227
TaaI ACNGT 2 cut(s) 372, 439
TaqI TCGA 7 cut(s) 90, 309, 378, 390, 710, 969, 1161
TatI WGTACW 1 cut(s) 1175
TfiI GAWTC 1 cut(s) 1296
Tru1I TTAA 5 cut(s) 77, 342, 828, 1238, 1309
Tru9I TTAA 5 cut(s) 77, 342, 828, 1238, 1309
TscAI CASTG 2 cut(s) 142, 442
TseFI GTSAC 1 cut(s) 906
TseI GCWGC 5 cut(s) 50, 695, 821, 1219, 1279
Tsp45I GTSAC 1 cut(s) 906
TspDTI ATGAA 5 cut(s) 33, 752, 967, 995, 1249
TspRI CASTG 2 cut(s) 142, 442
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 726
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 3 cut(s) 416, 865, 982
XceI RCATGY 5 cut(s) 155, 299, 386, 398, 778
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 3 cut(s) 9, 38, 464
ZrmI AGTACT 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.