Rh1BG147000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000404
Physical Location & Seq
Forward (+)
24207067 .. 24210134
3068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG147000.1

Sequence Viewer

Length: 387 bp
ATGAGAGGACGAGTTGAGGTGGTCAAGGAGCTGATCCGTGCAAAGCCTCAGTCCATTGCTCTTGTGGTTATGGATATATCAGGAGAAACAAGTTTGCATTTATGTGTTAAACATAACCATCTGGACTGCTTGAAAATTTTAGTGACAGAAGTGGGAGAGAATAACGACATACTCAACTCAGGAACCGGCTCTAATGCTAGCATGACAATTCTACGATTAGCTATGATGCTACGACAAATTGAGACCATAACATACCTGGTTTCACTGCCTGCTGTAAGAAAGAATGTTGTAAATAATATGATCTTGGACACCTTAGAGTACGGTCCCAGAGACTTTAGAAGCATAGAAATTCAACAGATTTTGATGGACGCATGTATCAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

128

Amino Acids

14.35

Weight (kDa)

6.82

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_4 PF13637 1 - 48 9e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 3 - 91 6.8e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 2 cut(s) 135, 348
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 2 cut(s) 133, 353
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 2 cut(s) 31, 221
AluI AGCT 2 cut(s) 31, 221
Alw26I GTCTC 2 cut(s) 236, 324
AlwI GGATC 1 cut(s) 28
ApoI RAATTY 2 cut(s) 135, 348
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspS9I GGNCC 1 cut(s) 323
AsuNHI GCTAGC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 323
BaeI ACNNNNGTAYC 1 cut(s) 358
BccI CCATC 2 cut(s) 126, 358
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 236, 324
BfaI CTAG 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 184, 325
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 216
BmtI GCTAGC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 62, 192
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 236, 324
BsmFI GGGAC 1 cut(s) 309
Bso31I GGTCTC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 33, 300
BspCNI CTCAG 2 cut(s) 61, 191
BspLI GGNNCC 2 cut(s) 184, 325
BspOI GCTAGC 1 cut(s) 201
BspPI GGATC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 2 cut(s) 33, 300
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 199, 270
BstDEI CTNAG 3 cut(s) 48, 178, 313
BstKTI GATC 2 cut(s) 36, 303
BstMAI GTCTC 2 cut(s) 236, 324
BstMBI GATC 2 cut(s) 33, 300
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 199, 270
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 377
CsiI ACCWGGT 1 cut(s) 255
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 202, 372
CviJI RGCY 4 cut(s) 31, 46, 189, 221
CviKI_1 RGCY 4 cut(s) 31, 46, 189, 221
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 3 cut(s) 48, 178, 313
DpnI GATC 2 cut(s) 35, 302
DpnII GATC 2 cut(s) 33, 300
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 205, 375
FaqI GGGAC 1 cut(s) 309
FatI CATG 2 cut(s) 201, 371
FspBI CTAG 1 cut(s) 198
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 377
Hin1II CATG 2 cut(s) 205, 375
HpaII CCGG 1 cut(s) 186
Hpy188III TCNNGA 3 cut(s) 81, 122, 180
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 41, 97
HpyF3I CTNAG 3 cut(s) 48, 178, 313
Hsp92II CATG 2 cut(s) 205, 375
Kzo9I GATC 2 cut(s) 33, 300
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 66, 107, 165, 199, 242, 269, 282, 340
LweI GCATC 1 cut(s) 216
MabI ACCWGGT 1 cut(s) 255
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 35, 302
MboI GATC 2 cut(s) 33, 300
MluCI AATT 4 cut(s) 135, 207, 237, 348
MnlI CCTC 2 cut(s) 10, 57
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
NdeII GATC 2 cut(s) 33, 300
NheI GCTAGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 205, 375
NlaIV GGNNCC 2 cut(s) 184, 325
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 184, 325
PspPI GGNCC 1 cut(s) 323
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 2 cut(s) 33, 300
Sau96I GGNCC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 257
SetI ASST 5 cut(s) 21, 33, 223, 258, 314
SexAI ACCWGGT 1 cut(s) 255
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 4 cut(s) 135, 207, 237, 348
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 323
TasI AATT 4 cut(s) 135, 207, 237, 348
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 2 cut(s) 135, 348
XceI RCATGY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 253
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.