Rw3G025950

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000404
Physical Location & Seq
Forward (+)
35063046 .. 35064292
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025950.1

Sequence Viewer

Length: 636 bp
ATGGAGATTAGAGAAGATCACCATGAAGACGATACAACAAGAGCACTCTATGAGGCAGCAGTTGCAGGCTCCGTATCATCTTTGGTAAGATTGATCCAGAAAGACCCTCTCATCCTCAACAAAGTTTCACTCACTCACTTCAGCGAAACTCCGCTCCACATCTCAGCTTTGCTCGGCCACCTTGATTTTACCAAAGCTCTTCTTATTCATAACTCGAGACTTGCGCGGGTGAGGGACTCCTTGAGACGCCCTCCGCTCCTCTTGGCATCTGCTGAAGGCCATAAGGAGACGGTCGAAGCTCTTCTGAAAGCCTACCCCGACGCTTGCTTGTTTCGGGATCAAGATGGTAGAGTTCCTCTTCACTACGCCGCAATGAGAGGACATGCTGAGGTTTTAGCTCAGCTGATGTGCGCAAAGCCCGAATCGGTCACATTAAGGGTTCTTGATAGAGGAGACACGGTTTTCCACTTATGTGTTACATATAACCAATTAGAATGCTTGAAGCTATTGGTGGAGGAAGTAGGAGACAATAATAGAGACGTCCTCAGTGCTAGAGCTGGTTGTGATGGTGGTATAACCATTCTTGAGTTAGCTGTGATGCTAAGGCAAATTGAGGTACATGTTTTCTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

211

Amino Acids

23.51

Weight (kDa)

5.98

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 105 1.9e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 79 - 137 4.9e-08 Ankyrin repeats (3 copies)
Ank_4 PF13637 88 - 132 4.1e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 112 - 177 2.7e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 543
Acc16I TGCGCA 1 cut(s) 412
AccBSI CCGCTC 2 cut(s) 154, 256
AccII CGCG 1 cut(s) 226
AciI CCGC 4 cut(s) 152, 226, 254, 369
AclWI GGATC 2 cut(s) 88, 345
AcoI YGGCCR 1 cut(s) 175
AcuI CTGAAG 2 cut(s) 124, 294
AcyI GRCGYC 2 cut(s) 247, 540
AfaI GTAC 1 cut(s) 618
AflIII ACRYGT 1 cut(s) 619
AgsI TTSAA 1 cut(s) 502
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 8 cut(s) 167, 197, 299, 398, 403, 505, 557, 593
AluI AGCT 8 cut(s) 167, 197, 299, 398, 403, 505, 557, 593
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 6 cut(s) 211, 238, 281, 447, 519, 531
AlwI GGATC 2 cut(s) 88, 345
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 2 cut(s) 175, 277
ApeKI GCWGC 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 2 cut(s) 226, 413
AsuHPI GGTGA 2 cut(s) 11, 241
AvaI CYCGRG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 338, 560
BcoDI GTCTC 6 cut(s) 211, 238, 281, 447, 519, 531
BfaI CTAG 1 cut(s) 552
BisI GCNGC 2 cut(s) 57, 369
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 2 cut(s) 58, 370
BmeT110I CYCGRG 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 2 cut(s) 275, 588
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 4 cut(s) 235, 267, 528, 560
Bpu10I CCTNAGC 2 cut(s) 387, 602
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 2 cut(s) 262, 605
BsaHI GRCGYC 2 cut(s) 247, 540
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bse3DI GCAATG 1 cut(s) 378
BseGI GGATG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 4 cut(s) 177, 378, 413, 559
BseRI GAGGAG 2 cut(s) 248, 465
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 177, 279
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 6 cut(s) 211, 238, 281, 447, 519, 531
BsmBI CGTCTC 3 cut(s) 238, 281, 531
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 177, 279
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 3 cut(s) 16, 93, 337
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 4 cut(s) 152, 226, 254, 369
BspANI GGCC 2 cut(s) 177, 279
BspCNI CTCAG 4 cut(s) 176, 379, 412, 558
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 2 cut(s) 88, 345
BspQI GCTCTTC 2 cut(s) 204, 306
BsrBI CCGCTC 2 cut(s) 154, 256
BsrDI GCAATG 1 cut(s) 378
BssMI GATC 3 cut(s) 16, 93, 337
BssNI GRCGYC 2 cut(s) 247, 540
Bst4CI ACNGT 2 cut(s) 292, 460
Bst6I CTCTTC 3 cut(s) 204, 306, 363
BstACI GRCGYC 2 cut(s) 247, 540
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 67, 325
BstDEI CTNAG 5 cut(s) 163, 387, 399, 545, 602
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 226
BstHHI GCGC 2 cut(s) 226, 413
BstKTI GATC 3 cut(s) 19, 96, 340
BstMAI GTCTC 6 cut(s) 211, 238, 281, 447, 519, 531
BstMBI GATC 3 cut(s) 16, 93, 337
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 2 cut(s) 386, 623
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 177, 279
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 553
Cac8I GCNNGC 2 cut(s) 67, 325
CfoI GCGC 2 cut(s) 226, 413
CseI GACGC 2 cut(s) 255, 329
Csp6I GTAC 1 cut(s) 617
CviAII CATG 3 cut(s) 23, 383, 620
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 5 cut(s) 163, 387, 399, 545, 602
DpnI GATC 3 cut(s) 18, 95, 339
DpnII GATC 3 cut(s) 16, 93, 337
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 3 cut(s) 204, 306, 363
EarI CTCTTC 3 cut(s) 204, 306, 363
Eco57I CTGAAG 2 cut(s) 124, 294
Eco88I CYCGRG 1 cut(s) 214
Esp3I CGTCTC 3 cut(s) 238, 281, 531
FaeI CATG 3 cut(s) 26, 386, 623
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 1 cut(s) 248
FatI CATG 3 cut(s) 22, 382, 619
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 57, 369
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 57, 369
FspBI CTAG 1 cut(s) 552
FspI TGCGCA 1 cut(s) 412
GlaI GCGC 2 cut(s) 225, 412
GluI GCNGC 2 cut(s) 57, 369
HaeIII GGCC 2 cut(s) 177, 279
HgaI GACGC 2 cut(s) 255, 329
HhaI GCGC 2 cut(s) 226, 413
Hin1I GRCGYC 2 cut(s) 247, 540
Hin1II CATG 3 cut(s) 26, 386, 623
Hin6I GCGC 2 cut(s) 224, 411
HinP1I GCGC 2 cut(s) 224, 411
HinfI GANTC 2 cut(s) 236, 422
HphI GGTGA 2 cut(s) 11, 241
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 6 cut(s) 97, 216, 335, 341, 443, 584
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 292, 460
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 2 cut(s) 65, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 5 cut(s) 163, 387, 399, 545, 602
HpySE526I ACGT 1 cut(s) 540
Hsp92I GRCGYC 2 cut(s) 247, 540
Hsp92II CATG 3 cut(s) 26, 386, 623
HspAI GCGC 2 cut(s) 224, 411
Kzo9I GATC 3 cut(s) 16, 93, 337
LguI GCTCTTC 2 cut(s) 204, 306
LmnI GCTCC 3 cut(s) 74, 159, 261
LpnPI CCDG 3 cut(s) 51, 110, 543
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 275, 588
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 427, 475
MalI GATC 3 cut(s) 18, 95, 339
MbiI CCGCTC 2 cut(s) 154, 256
MboI GATC 3 cut(s) 16, 93, 337
MboII GAAGA 5 cut(s) 26, 38, 191, 293, 350
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 488, 609, 631
MlyI GAGTC 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 2 cut(s) 434, 634
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 500
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 16, 93, 337
NlaIII CATG 3 cut(s) 26, 386, 623
NlaIV GGNNCC 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 427
NsbI TGCGCA 1 cut(s) 412
NspI RCATGY 2 cut(s) 386, 623
OliI CACNNNNGTG 1 cut(s) 471
PaeR7I CTCGAG 1 cut(s) 214
PciI ACATGT 1 cut(s) 619
PciSI GCTCTTC 2 cut(s) 204, 306
PctI GAATGC 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 2 cut(s) 58, 370
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PscI ACATGT 1 cut(s) 619
PspN4I GGNNCC 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
RseI CAYNNNNRTG 1 cut(s) 471
SapI GCTCTTC 2 cut(s) 204, 306
SaqAI TTAA 2 cut(s) 434, 634
SatI GCNGC 2 cut(s) 57, 369
Sau3AI GATC 3 cut(s) 16, 93, 337
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 275, 588
Sfr274I CTCGAG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 3 cut(s) 214, 241, 584
SmoI CTYRAG 3 cut(s) 214, 241, 584
Sse9I AATT 3 cut(s) 488, 609, 631
SsiI CCGC 4 cut(s) 152, 226, 254, 369
SspMI CTAG 1 cut(s) 552
TaaI ACNGT 2 cut(s) 292, 460
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 215, 294
TaqII GACCGA 1 cut(s) 415
TasI AATT 3 cut(s) 488, 609, 631
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 2 cut(s) 434, 634
Tru9I TTAA 2 cut(s) 434, 634
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 39, 197
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 553
XceI RCATGY 2 cut(s) 386, 623
XhoI CTCGAG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 552
ZraI GACGTC 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.