Rw0G006190

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00241
OG0000404
Physical Location & Seq
Forward (+)
3486 .. 4226
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006190.1

Sequence Viewer

Length: 741 bp
ATGTTCTTGGACACCTTAGAGTACGGTCCCAGAGACTTTAGAAGCATAGAAATTCAACAGATTTTGATGGACACATGTATCAATAAAAACAAAAAAGATGAGTATGAGCAACAAATATTCTCAACAACAGCACCTCTCCCGTTACCATCAGAATCTAGTATAGTCGGAAACAGAACAATCAAAACATGGTTGTGCATGAAATTAATGCAATTCTTGAAGTACAACAAGGGTGATCGTTGGTTTGAAGAAATACGCGGCATGTTGATGGTTGTCGCTACCATGATATCAACCATGACTTTCCAAGCAGCCATCAACCCACCAGGTGGTGTTTGGCAAGATAATGTCAAATCATTTAGCATTGAAGGAACAAAATACTGTACAGATCAAAACCCTTGCTTTCCTGGAACTGCAGTGTTGGGCGAGGTGTGGACAACCGACATGCGGGAATTCATTAAGTACAACACCATCTCTTTCGTTGCTTCTCTCAGTGTTACCATTTTTCTTATCAGCGGCTTTCCTCTGACAAATCGGATATGTGTATGGTTCTTATCAATGGCTATGTGCATTACTATCACATTCACGGGTCTTACTTACCTAACTGGTGTTTACTTAGTGATGCCATTTTCTGTTGCAGATCCTGTTTACAGTAAGTACAGGCCATTAGGAATTCGTGTTTGGATTGGATTGCTTGTTATGGTTGGTTTATTCCATACTTTTCGTTTTCTCACTTGGCTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

246

Amino Acids

28.22

Weight (kDa)

8.17

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 79 - 205 2.7e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 323
AccII CGCG 1 cut(s) 255
AciI CCGC 3 cut(s) 255, 442, 510
AclWI GGATC 1 cut(s) 629
AcsI RAATTY 3 cut(s) 51, 446, 666
AdeI CACNNNGTG 1 cut(s) 323
AfaI GTAC 5 cut(s) 23, 221, 379, 458, 653
AfiI CCNNNNNNNGG 2 cut(s) 323, 441
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 56, 217, 245, 362
AjnI CCWGG 2 cut(s) 319, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 658, 690
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 629
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 3 cut(s) 51, 446, 666
AseI ATTAAT 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 26
BaeI ACNNNNGTAYC 2 cut(s) 61, 94
BbvI GCAGC 1 cut(s) 317
BccI CCATC 5 cut(s) 61, 154, 259, 317, 473
BciT130I CCWGG 2 cut(s) 321, 402
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 3 cut(s) 256, 306, 511
BlsI GCNGC 3 cut(s) 257, 307, 512
Bme1390I CCNGG 2 cut(s) 321, 402
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 321, 402
BmsI GCATC 1 cut(s) 606
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 441
Bse1I ACTGG 1 cut(s) 604
BseBI CCWGG 2 cut(s) 321, 402
BseLI CCNNNNNNNGG 2 cut(s) 323, 441
BseMII CTCAG 1 cut(s) 499
BseNI ACTGG 1 cut(s) 604
BseXI GCAGC 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 658
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 323, 441
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 1 cut(s) 658
Bsp1407I TGTACA 1 cut(s) 377
Bsp143I GATC 3 cut(s) 232, 382, 634
BspACI CCGC 3 cut(s) 255, 442, 510
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 1 cut(s) 498
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 1 cut(s) 629
BsrGI TGTACA 1 cut(s) 377
BsrI ACTGG 1 cut(s) 604
BssMI GATC 3 cut(s) 232, 382, 634
Bst2UI CCWGG 2 cut(s) 321, 402
Bst4CI ACNGT 3 cut(s) 26, 377, 647
BstAUI TGTACA 1 cut(s) 377
BstDEI CTNAG 3 cut(s) 16, 485, 610
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 3 cut(s) 235, 385, 637
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 3 cut(s) 232, 382, 634
BstNI CCWGG 2 cut(s) 321, 402
BstNSI RCATGY 3 cut(s) 78, 262, 442
BstSCI CCNGG 2 cut(s) 319, 400
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BsuRI GGCC 1 cut(s) 658
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 417, 493
CaiI CAGNNNCTG 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 26
CsiI ACCWGGT 1 cut(s) 319
Csp6I GTAC 5 cut(s) 22, 220, 378, 457, 652
CviAII CATG 7 cut(s) 75, 186, 196, 259, 280, 292, 439
CviJI RGCY 5 cut(s) 308, 513, 557, 658, 733
CviKI_1 RGCY 5 cut(s) 308, 513, 557, 658, 733
CviQI GTAC 5 cut(s) 22, 220, 378, 457, 652
DdeI CTNAG 3 cut(s) 16, 485, 610
DpnI GATC 3 cut(s) 234, 384, 636
DpnII GATC 3 cut(s) 232, 382, 634
DraIII CACNNNGTG 1 cut(s) 323
Eco32I GATATC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 26
EcoRI GAATTC 2 cut(s) 446, 666
EcoRII CCWGG 2 cut(s) 319, 400
EcoRV GATATC 1 cut(s) 285
FaeI CATG 7 cut(s) 78, 189, 199, 262, 283, 295, 442
FaqI GGGAC 1 cut(s) 12
FatI CATG 7 cut(s) 74, 185, 195, 258, 279, 291, 438
FauI CCCGC 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 256, 306, 511
Fsp4HI GCNGC 3 cut(s) 256, 306, 511
FspBI CTAG 1 cut(s) 156
GluI GCNGC 3 cut(s) 256, 306, 511
HaeIII GGCC 1 cut(s) 658
Hin1II CATG 7 cut(s) 78, 189, 199, 262, 283, 295, 442
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 3 cut(s) 429, 607, 643
Hpy188I TCNGA 4 cut(s) 151, 167, 522, 531
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 3 cut(s) 429, 607, 643
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 3 cut(s) 26, 377, 647
HpyCH4V TGCA 5 cut(s) 195, 208, 410, 564, 632
HpyF3I CTNAG 3 cut(s) 16, 485, 610
Hsp92II CATG 7 cut(s) 78, 189, 199, 262, 283, 295, 442
Kzo9I GATC 3 cut(s) 232, 382, 634
LpnPI CCDG 8 cut(s) 43, 306, 333, 387, 414, 585, 640, 651
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 606
MabI ACCWGGT 1 cut(s) 319
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 141, 490
MalI GATC 3 cut(s) 234, 384, 636
MboI GATC 3 cut(s) 232, 382, 634
MboII GAAGA 1 cut(s) 257
MflI RGATCY 1 cut(s) 634
MluCI AATT 5 cut(s) 51, 200, 209, 446, 666
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 3 cut(s) 144, 415, 528
MseI TTAA 2 cut(s) 203, 453
MslI CAYNNNNRTG 2 cut(s) 190, 263
MspA1I CMGCKG 1 cut(s) 510
MspR9I CCNGG 2 cut(s) 321, 402
MvaI CCWGG 2 cut(s) 321, 402
MvnI CGCG 1 cut(s) 255
NdeII GATC 3 cut(s) 232, 382, 634
NlaIII CATG 7 cut(s) 78, 189, 199, 262, 283, 295, 442
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 3 cut(s) 78, 262, 442
PciI ACATGT 1 cut(s) 74
PfeI GAWTC 1 cut(s) 152
PflMI CCANNNNNTGG 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 400
PkrI GCNGC 3 cut(s) 257, 307, 512
PscI ACATGT 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 319, 400
PspGI CCWGG 2 cut(s) 319, 400
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 26
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 634
RsaI GTAC 5 cut(s) 23, 221, 379, 458, 653
RsaNI GTAC 5 cut(s) 22, 220, 378, 457, 652
RseI CAYNNNNRTG 2 cut(s) 190, 263
SaqAI TTAA 2 cut(s) 203, 453
SatI GCNGC 3 cut(s) 256, 306, 511
Sau3AI GATC 3 cut(s) 232, 382, 634
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 321, 402
SetI ASST 5 cut(s) 17, 136, 325, 426, 597
SexAI ACCWGGT 1 cut(s) 319
SfaNI GCATC 1 cut(s) 606
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 2 cut(s) 190, 263
Sse9I AATT 5 cut(s) 51, 200, 209, 446, 666
SsiI CCGC 3 cut(s) 255, 442, 510
SspI AATATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 319, 400
TaaI ACNGT 3 cut(s) 26, 377, 647
TasI AATT 5 cut(s) 51, 200, 209, 446, 666
TatI WGTACW 4 cut(s) 219, 377, 456, 651
TauI GCSGC 2 cut(s) 258, 513
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 203, 453
Tru9I TTAA 2 cut(s) 203, 453
TscAI CASTG 2 cut(s) 417, 493
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 212, 439
TspRI CASTG 2 cut(s) 417, 493
Van91I CCANNNNNTGG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 203
XapI RAATTY 3 cut(s) 51, 446, 666
XceI RCATGY 3 cut(s) 78, 262, 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.