RLG00000029016

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000404
Physical Location & Seq
Reverse (-)
31568840 .. 31569409
570 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029016

Sequence Viewer

Length: 570 bp
ATGGAGATTAGAAATGATCATGATGGAGATGATACACTAAGACTCTTCCACGCATCAGTGGAAGGATCGATTTCATTGCTAAACACATTGATTCAAAACGATCCACTACTTCTTAGAAGAGTTTCTCTGACTACATTGAGTGAAACCCCATTGCATCTTTCAGCTTTGCTTGGCCACCTTGAATTTTCCAGAATCATTCTTACTCATAATCCAAGACTTGCCACAGAGTTGGACTCCTTAAGGCGCTCACCCCTGCACTTGGCTTCGGCAGAAGAACACAAGGAGCTCGCAGAAGGACACAAGGAGCTCATACAAGTTTTGTTGCTTGCATTTCCTGATGCATGCTTGTTTCATGATCAGGAGGGGAGAATCCCTCTACACTATGCCGTCATGAGAGGACGAGTTGAGGTGGTTAGGGAGCTGATCCGTGCAAAGCCTCAGTCCATTGCTCTTGCGGTTCTGGATAGATCAGGAGAAACAAGTTTGCATTTATGTGTTAAACATAACCATCTGGACTGCTTGAAAATTTTAGTGACAGAAGTGGGAGAGAATAACGACATACTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

190

Amino Acids

21.26

Weight (kDa)

5.87

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 15 - 97 5.1e-07 Ankyrin repeats (3 copies)
Ank_4 PF13637 97 - 139 2.3e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 98 - 184 9.4e-15 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 455
AclWI GGATC 3 cut(s) 73, 95, 418
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 2 cut(s) 182, 525
AfiI CCNNNNNNNGG 1 cut(s) 259
AflII CTTAAG 1 cut(s) 238
AgsI TTSAA 3 cut(s) 95, 182, 523
AluBI AGCT 4 cut(s) 164, 286, 307, 421
AluI AGCT 4 cut(s) 164, 286, 307, 421
Alw21I GWGCWC 2 cut(s) 288, 309
AlwI GGATC 3 cut(s) 73, 95, 418
AoxI GGCC 1 cut(s) 172
ApoI RAATTY 2 cut(s) 182, 525
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 240
BalI TGGCCA 1 cut(s) 174
BanII GRGCYC 2 cut(s) 288, 309
Bbv12I GWGCWC 2 cut(s) 288, 309
BccI CCATC 2 cut(s) 17, 516
BceAI ACGGC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BclI TGATCA 2 cut(s) 16, 355
BfoI RGCGCY 1 cut(s) 247
BfrI CTTAAG 1 cut(s) 238
BmsI GCATC 3 cut(s) 62, 163, 328
BplI GAGNNNNNCTC 4 cut(s) 218, 250, 358, 390
Bsa29I ATCGAT 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 3 cut(s) 74, 149, 444
BseCI ATCGAT 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 3 cut(s) 74, 149, 444
BseMII CTCAG 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 288, 309
BslI CCNNNNNNNGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 288, 309
Bsp143I GATC 6 cut(s) 16, 65, 100, 355, 423, 467
BspACI CCGC 1 cut(s) 455
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 451
BspDI ATCGAT 1 cut(s) 68
BspHI TCATGA 3 cut(s) 19, 352, 390
BspPI GGATC 3 cut(s) 73, 95, 418
BspTI CTTAAG 1 cut(s) 238
BsrDI GCAATG 3 cut(s) 74, 149, 444
BssMI GATC 6 cut(s) 16, 65, 100, 355, 423, 467
Bst6I CTCTTC 2 cut(s) 50, 112
BstAFI CTTAAG 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 288, 327, 343
BstDEI CTNAG 3 cut(s) 38, 113, 438
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 6 cut(s) 19, 68, 103, 358, 426, 470
BstMBI GATC 6 cut(s) 16, 65, 100, 355, 423, 467
BstNSI RCATGY 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 229
Bsu15I ATCGAT 1 cut(s) 68
BsuRI GGCC 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 288, 327, 343
CciI TCATGA 3 cut(s) 19, 352, 390
CfoI GCGC 1 cut(s) 246
ClaI ATCGAT 1 cut(s) 68
CviAII CATG 4 cut(s) 20, 342, 353, 391
CviJI RGCY 7 cut(s) 164, 174, 263, 286, 307, 421, 436
CviKI_1 RGCY 7 cut(s) 164, 174, 263, 286, 307, 421, 436
DdeI CTNAG 3 cut(s) 38, 113, 438
DpnI GATC 6 cut(s) 18, 67, 102, 357, 425, 469
DpnII GATC 6 cut(s) 16, 65, 100, 355, 423, 467
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 50, 112
EarI CTCTTC 2 cut(s) 50, 112
Ecl136II GAGCTC 2 cut(s) 286, 307
Eco24I GRGCYC 2 cut(s) 288, 309
Eco53kI GAGCTC 2 cut(s) 286, 307
EcoICRI GAGCTC 2 cut(s) 286, 307
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 288, 309
FaeI CATG 4 cut(s) 23, 345, 356, 394
FatI CATG 4 cut(s) 19, 341, 352, 390
FbaI TGATCA 2 cut(s) 16, 355
FriOI GRGCYC 2 cut(s) 288, 309
GlaI GCGC 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 1 cut(s) 174
HhaI GCGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 23, 345, 356, 394
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 5 cut(s) 42, 91, 192, 233, 369
HphI GGTGA 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 9 cut(s) 20, 189, 335, 353, 359, 391, 461, 471, 512
HpyAV CCTTC 2 cut(s) 56, 287
HpyCH4V TGCA 6 cut(s) 154, 256, 329, 341, 431, 487
HpyF3I CTNAG 3 cut(s) 38, 113, 438
Hsp92II CATG 4 cut(s) 23, 345, 356, 394
HspAI GCGC 1 cut(s) 244
Ksp22I TGATCA 2 cut(s) 16, 355
Kzo9I GATC 6 cut(s) 16, 65, 100, 355, 423, 467
LmnI GCTCC 3 cut(s) 283, 304, 418
LpnPI CCDG 7 cut(s) 202, 266, 344, 348, 446, 456, 497
LweI GCATC 3 cut(s) 62, 163, 328
MaeIII GTNAC 1 cut(s) 532
MalI GATC 6 cut(s) 18, 67, 102, 357, 425, 469
MboI GATC 6 cut(s) 16, 65, 100, 355, 423, 467
MboII GAAGA 3 cut(s) 37, 129, 284
MhlI GDGCHC 2 cut(s) 288, 309
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 2 cut(s) 182, 525
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 2 cut(s) 36, 227
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 355, 384, 389, 400, 447
Mox20I TGGCCA 1 cut(s) 174
Mph1103I ATGCAT 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 1 cut(s) 174
MseI TTAA 2 cut(s) 239, 498
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 174
MspCI CTTAAG 1 cut(s) 238
NdeII GATC 6 cut(s) 16, 65, 100, 355, 423, 467
NlaIII CATG 4 cut(s) 23, 345, 356, 394
NmuCI GTSAC 1 cut(s) 532
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PagI TCATGA 3 cut(s) 19, 352, 390
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 3 cut(s) 91, 192, 369
PleI GAGTC 2 cut(s) 36, 227
PpsI GAGTC 2 cut(s) 36, 227
Psp124BI GAGCTC 2 cut(s) 288, 309
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 2 cut(s) 288, 309
SaqAI TTAA 2 cut(s) 239, 498
Sau3AI GATC 6 cut(s) 16, 65, 100, 355, 423, 467
SchI GAGTC 2 cut(s) 36, 227
SduI GDGCHC 2 cut(s) 288, 309
SetI ASST 6 cut(s) 166, 180, 288, 309, 411, 423
SfaNI GCATC 3 cut(s) 62, 163, 328
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 345
Sse9I AATT 2 cut(s) 182, 525
SsiI CCGC 1 cut(s) 455
SstI GAGCTC 2 cut(s) 288, 309
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 182, 525
TfiI GAWTC 3 cut(s) 91, 192, 369
Tru1I TTAA 2 cut(s) 239, 498
Tru9I TTAA 2 cut(s) 239, 498
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 2 cut(s) 63, 341
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 1 cut(s) 63
Vha464I CTTAAG 1 cut(s) 238
XapI RAATTY 2 cut(s) 182, 525
XceI RCATGY 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.