pycom12g20010

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000404
Physical Location & Seq
Forward (+)
21655766 .. 21656240
475 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g20010.2

Sequence Viewer

Length: 375 bp
ATGAGAGGAGAAGTTGAGGTGCTCCAGAAGTTGATTGATAAAAATCCTGAGTCCATTTATGTCAAAGTTGAAAACAGATCGAAAGAAACAGTTTTGCACTTGTGTATTATACACAACCAGTTAGAGTGCTTGAAACTGTTGGTTGAAAGAGATGACAGCAATGGTGAGTTCCTCAACTCAAGAGCCGGCTGTGATGGTGGTGTGACCATCCTGCACTTAGCTTTGATGCGAAGGCAAATTAAGACTATACGTTACCTGCTTTCCGTTGATGCTATAAGAGGCGAAGCAATTGGTGCGAATGGGATGTCTCTGACCATGTCAGATATCTTAGAGTACAGTAGCAATGCAAGAGAAGACTTTAGCAGAAGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

125

Amino Acids

13.98

Weight (kDa)

5.91

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AfaI GTAC 1 cut(s) 335
AgsI TTSAA 3 cut(s) 71, 133, 146
AluBI AGCT 2 cut(s) 221, 369
AluI AGCT 2 cut(s) 221, 369
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 312
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsuHPI GGTGA 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 2 cut(s) 188, 215
BcoDI GTCTC 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 264
BmsI GCATC 2 cut(s) 216, 259
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 2 cut(s) 166, 349
Bse8I GATNNNNATC 1 cut(s) 42
BseGI GGATG 2 cut(s) 207, 309
BseJI GATNNNNATC 1 cut(s) 42
BseMI GCAATG 2 cut(s) 166, 349
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 264
BsrDI GCAATG 2 cut(s) 166, 349
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 91, 138, 338
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 48, 217, 328
BstF5I GGATG 2 cut(s) 207, 309
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 360
BtsCI GGATG 2 cut(s) 207, 309
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 185
Csp6I GTAC 1 cut(s) 334
CviAII CATG 1 cut(s) 316
CviJI RGCY 4 cut(s) 185, 189, 221, 369
CviKI_1 RGCY 4 cut(s) 185, 189, 221, 369
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 3 cut(s) 48, 217, 328
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 325
EcoRV GATATC 1 cut(s) 325
FaeI CATG 1 cut(s) 319
FaiI YATR 6 cut(s) 60, 110, 248, 275, 317, 373
FatI CATG 1 cut(s) 315
FokI GGATG 2 cut(s) 194, 316
GsuI CTGGAG 1 cut(s) 8
HapII CCGG 1 cut(s) 186
Hin1II CATG 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 312, 322
Hpy188III TCNNGA 3 cut(s) 25, 47, 180
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 3 cut(s) 91, 138, 338
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 3 cut(s) 97, 214, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 3 cut(s) 48, 217, 328
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 1 cut(s) 319
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 6 cut(s) 38, 60, 131, 199, 224, 269
LweI GCATC 2 cut(s) 216, 259
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 202, 251
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 365
MfeI CAATTG 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 237, 288
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 3 cut(s) 10, 182, 272
MroNI GCCGGC 1 cut(s) 185
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 293
NaeI GCCGGC 1 cut(s) 187
NdeII GATC 1 cut(s) 77
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 316
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 316
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 77
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 24
SetI ASST 5 cut(s) 21, 223, 253, 258, 371
SfaNI GCATC 2 cut(s) 216, 259
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 2 cut(s) 237, 288
TaaI ACNGT 3 cut(s) 91, 138, 338
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 80
TasI AATT 2 cut(s) 237, 288
TatI WGTACW 1 cut(s) 333
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 253
Tth111I GACNNNGTC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.