Rmu_sc0014077.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014077.1
OG0000404
Physical Location & Seq
Reverse (-)
6690 .. 8575
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014077.1_g000001.1.cds

Sequence Viewer

Length: 1332 bp
atggaagcgtttgatagggggtcggccaatgatagtatctatgtgcttcacaatataggccaccatgactttaccagaacccttctcactcataatcccaacctcgcgaaggagttggactcttacagacgctcacctctccacttggcttctgccgagggccatgaggagatcgttcaagttttgttacatgcagatcatgtcgatgtctgcttgtttcatgatcaggatggcagaattccgcttcactattcagccatgagaggacgacttgaggtcctcaagaagttgatacgagcaaagccagagtccatatttgtttcggttctgaatagatcaagagaaacggctttgcacttgtgtgttaaatataatcaattggagtgcttgaaactgttagtcgaacatgtggtcgaacatgtgggtgaacaaaaatcagaattcctcaactcaaaagacactgttgggggccagactatcctgcacctagctttggttctgaagcaaactgagacaataaggtacctgctttctatacctattatacgagaaaaagcaaatgatgtgatcagatcttatgtcttggagcacaactcaggagatagcagaaatcttgaacttcaaaaaattgtgatcggccacaacgatgaccaccaccatcagcaaccattgtcatctgtaccgccaggaacgactgctaatgttcttgacaacaatgcagcggaaaaagtgtcgaaggcaagttggaggaccaagctaatgaaatacccaactgattggctggaagaaacccgtggcatgctgattgttgtggccggcatgatcgcaacgatgactttccaagctgcagttaatccacccggtggtgtttggcaagaaaataatacgaattctacagataataattatggatttccttcctgcaccgagtcacagatatgttacgctggaacggcagttttagcctatggcatggacaaggcatcttacttcgacctgttcatgaatttcaataccatctccttccttgcttctttgagtgttactcttttacttattagcggttttcctctccataaccggctttgtatgtggctcttatcaatgggtatgtgtatcgttctctcttgcctggcactaagctatctaattattgtgaacatgatcatccctaatcagcctttcgatctatataagagtactacttacaatattatcatctgcgtttggattttgttgctgcttgccatggtcgttttaatccacacacttcatgttttcatttggctggggaagaggctgcgtgatcgtcgcagattcagacataattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

443

Amino Acids

50.29

Weight (kDa)

7.1

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
Acc65I GGTACC 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 522
AccB7I CCANNNNNTGG 1 cut(s) 863
AccII CGCG 1 cut(s) 107
AciI CCGC 4 cut(s) 242, 683, 722, 1062
AcoI YGGCCR 3 cut(s) 24, 637, 813
AcsI RAATTY 4 cut(s) 237, 440, 889, 1006
AcuI CTGAAG 1 cut(s) 521
AdeI CACNNNGTG 1 cut(s) 863
AfaI GTAC 3 cut(s) 524, 681, 1201
AfiI CCNNNNNNNGG 3 cut(s) 109, 493, 863
AflIII ACRYGT 2 cut(s) 406, 418
AgsI TTSAA 5 cut(s) 179, 391, 617, 623, 1012
AhdI GACNNNNNGTC 1 cut(s) 275
AjnI CCWGG 2 cut(s) 685, 1131
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 4 cut(s) 491, 757, 845, 1143
AluI AGCT 4 cut(s) 491, 757, 845, 1143
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 1 cut(s) 506
AoxI GGCC 6 cut(s) 24, 58, 160, 469, 637, 813
ApeKI GCWGC 4 cut(s) 719, 845, 1240, 1300
ApoI RAATTY 4 cut(s) 237, 440, 889, 1006
ArsI GACNNNNNNTTYG 4 cut(s) 293, 325, 396, 428
Asp718I GGTACC 1 cut(s) 522
AspS9I GGNCC 4 cut(s) 160, 277, 469, 750
AsuC2I CCSGG 1 cut(s) 861
AsuHPI GGTGA 2 cut(s) 126, 437
AvaII GGWCC 2 cut(s) 277, 750
BanI GGYRCC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 4 cut(s) 731, 832, 1227, 1287
BccI CCATC 3 cut(s) 224, 666, 1025
BceAI ACGGC 2 cut(s) 363, 969
BciT130I CCWGG 2 cut(s) 687, 1133
BclI TGATCA 3 cut(s) 223, 567, 1164
BcnI CCSGG 1 cut(s) 861
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 2 cut(s) 846, 894
BfuAI ACCTGC 1 cut(s) 534
BglII AGATCT 1 cut(s) 572
BisI GCNGC 4 cut(s) 720, 846, 1241, 1301
BlsI GCNGC 4 cut(s) 721, 847, 1242, 1302
BmcAI AGTACT 1 cut(s) 1201
Bme1390I CCNGG 3 cut(s) 687, 861, 1133
Bme18I GGWCC 2 cut(s) 277, 750
BmeRI GACNNNNNGTC 1 cut(s) 275
BmgT120I GGNCC 4 cut(s) 160, 277, 469, 750
BmiI GGNNCC 2 cut(s) 470, 524
BmrFI CCNGG 3 cut(s) 687, 861, 1133
BmsI GCATC 1 cut(s) 992
BplI GAGNNNNNCTC 6 cut(s) 104, 136, 578, 610, 1030, 1062
BpuEI CTTGAG 2 cut(s) 266, 293
BpuMI CCSGG 1 cut(s) 861
BsaJI CCNNGG 3 cut(s) 156, 793, 1248
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 493, 863
Bse118I RCCGGY 2 cut(s) 815, 1080
BseBI CCWGG 2 cut(s) 687, 1133
BseDI CCNNGG 3 cut(s) 156, 793, 1248
BseGI GGATG 2 cut(s) 235, 1167
BseLI CCNNNNNNNGG 3 cut(s) 109, 493, 863
BseMII CTCAG 2 cut(s) 501, 609
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 4 cut(s) 731, 832, 1227, 1287
BseYI CCCAGC 1 cut(s) 1288
BsgI GTGCAG 2 cut(s) 467, 907
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 6 cut(s) 26, 60, 162, 471, 639, 815
BshNI GGYRCC 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 3 cut(s) 816, 861, 1081
BslI CCNNNNNNNGG 3 cut(s) 109, 493, 863
BsmAI GTCTC 1 cut(s) 506
BsnI GGCC 6 cut(s) 26, 60, 162, 471, 639, 815
Bsp1286I GDGCHC 1 cut(s) 591
Bsp19I CCATGG 1 cut(s) 1248
Bsp68I TCGCGA 1 cut(s) 107
BspACI CCGC 4 cut(s) 242, 683, 722, 1062
BspANI GGCC 6 cut(s) 26, 60, 162, 471, 639, 815
BspCNI CTCAG 2 cut(s) 502, 608
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 2 cut(s) 220, 1002
BspLI GGNNCC 2 cut(s) 470, 524
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 522
BsrFI RCCGGY 2 cut(s) 815, 1080
BssAI RCCGGY 2 cut(s) 815, 1080
BssECI CCNNGG 3 cut(s) 156, 793, 1248
BssT1I CCWWGG 1 cut(s) 1248
Bst2UI CCWGG 2 cut(s) 687, 1133
Bst4CI ACNGT 2 cut(s) 396, 463
Bst6I CTCTTC 1 cut(s) 1289
BstC8I GCNNGC 3 cut(s) 800, 817, 1245
BstDEI CTNAG 3 cut(s) 510, 595, 1139
BstDSI CCRYGG 2 cut(s) 793, 1248
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 235, 1167
BstFNI CGCG 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 506
BstMWI GCNNNNNNNGC 2 cut(s) 953, 962
BstNI CCWGG 2 cut(s) 687, 1133
BstNSI RCATGY 4 cut(s) 194, 410, 422, 802
BstSCI CCNGG 3 cut(s) 685, 859, 1131
BstSFI CTRYAG 2 cut(s) 846, 894
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 731, 832, 1227, 1287
BstX2I RGATCY 1 cut(s) 572
BstXI CCANNNNNNTGG 1 cut(s) 777
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 6 cut(s) 26, 60, 162, 471, 639, 815
BtgI CCRYGG 2 cut(s) 793, 1248
BtsCI GGATG 2 cut(s) 235, 1167
BtsIMutI CAGTG 1 cut(s) 459
BtuMI TCGCGA 1 cut(s) 107
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 3 cut(s) 800, 817, 1245
CciI TCATGA 2 cut(s) 220, 1002
Cfr10I RCCGGY 2 cut(s) 815, 1080
Cfr13I GGNCC 4 cut(s) 160, 277, 469, 750
CseI GACGC 1 cut(s) 138
Csp6I GTAC 3 cut(s) 523, 680, 1200
CviQI GTAC 3 cut(s) 523, 680, 1200
DdeI CTNAG 3 cut(s) 510, 595, 1139
DraIII CACNNNGTG 1 cut(s) 863
DriI GACNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 3 cut(s) 24, 637, 813
Eam1104I CTCTTC 1 cut(s) 1289
Eam1105I GACNNNNNGTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 1289
Eco130I CCWWGG 1 cut(s) 1248
Eco47I GGWCC 2 cut(s) 277, 750
Eco57I CTGAAG 1 cut(s) 521
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 277
EcoRI GAATTC 3 cut(s) 237, 440, 889
EcoRII CCWGG 2 cut(s) 685, 1131
EcoT14I CCWWGG 1 cut(s) 1248
ErhI CCWWGG 1 cut(s) 1248
FbaI TGATCA 3 cut(s) 223, 567, 1164
Fnu4HI GCNGC 4 cut(s) 720, 846, 1241, 1301
FokI GGATG 2 cut(s) 242, 1154
Fsp4HI GCNGC 4 cut(s) 720, 846, 1241, 1301
FspBI CTAG 1 cut(s) 488
GluI GCNGC 4 cut(s) 720, 846, 1241, 1301
GsaI CCCAGC 1 cut(s) 1292
HaeIII GGCC 6 cut(s) 26, 60, 162, 471, 639, 815
HapII CCGG 3 cut(s) 816, 861, 1081
HgaI GACGC 1 cut(s) 138
HinfI GANTC 4 cut(s) 119, 308, 929, 1317
HpaII CCGG 3 cut(s) 816, 861, 1081
HphI GGTGA 2 cut(s) 126, 437
Hpy166II GTNNAC 2 cut(s) 428, 1159
Hpy188I TCNGA 5 cut(s) 330, 439, 501, 572, 1322
Hpy188III TCNNGA 9 cut(s) 106, 221, 227, 283, 339, 597, 614, 707, 1003
Hpy8I GTNNAC 2 cut(s) 428, 1159
Hpy99I CGWCG 1 cut(s) 1314
HpyAV CCTTC 5 cut(s) 92, 103, 730, 927, 1033
HpyCH4III ACNGT 2 cut(s) 396, 463
HpyCH4V TGCA 6 cut(s) 194, 355, 484, 719, 848, 924
HpyF10VI GCNNNNNNNGC 2 cut(s) 953, 962
HpyF3I CTNAG 3 cut(s) 510, 595, 1139
KpnI GGTACC 1 cut(s) 526
KroI GCCGGC 1 cut(s) 815
KroNI GCCGGC 1 cut(s) 817
Ksp22I TGATCA 3 cut(s) 223, 567, 1164
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 4 cut(s) 731, 832, 1227, 1287
LweI GCATC 1 cut(s) 992
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 4 cut(s) 186, 930, 941, 1042
MboII GAAGA 2 cut(s) 797, 1306
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 9 cut(s) 237, 377, 440, 627, 889, 904, 1006, 1149, 1327
MlyI GAGTC 3 cut(s) 113, 317, 938
MmeI TCCRAC 2 cut(s) 96, 725
MroNI GCCGGC 1 cut(s) 815
MseI TTAA 4 cut(s) 366, 852, 1259, 1330
MslI CAYNNNNRTG 5 cut(s) 204, 360, 423, 645, 937
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 3 cut(s) 816, 861, 1081
MspR9I CCNGG 3 cut(s) 687, 861, 1133
MunI CAATTG 1 cut(s) 377
MvaI CCWGG 2 cut(s) 687, 1133
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 953, 962
NaeI GCCGGC 1 cut(s) 817
NciI CCSGG 1 cut(s) 861
NcoI CCATGG 1 cut(s) 1248
NgoMIV GCCGGC 1 cut(s) 815
NlaIV GGNNCC 2 cut(s) 470, 524
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 930
NruI TCGCGA 1 cut(s) 107
NspI RCATGY 4 cut(s) 194, 410, 422, 802
OliI CACNNNNGTG 1 cut(s) 360
PaeI GCATGC 1 cut(s) 802
PagI TCATGA 2 cut(s) 220, 1002
PciI ACATGT 2 cut(s) 406, 418
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PdiI GCCGGC 1 cut(s) 817
PfeI GAWTC 1 cut(s) 1317
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 4 cut(s) 721, 847, 1242, 1302
PleI GAGTC 3 cut(s) 113, 316, 937
PpsI GAGTC 3 cut(s) 113, 316, 937
PpuMI RGGWCCY 1 cut(s) 277
PscI ACATGT 2 cut(s) 406, 418
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 685, 1131
PspFI CCCAGC 1 cut(s) 1288
PspGI CCWGG 2 cut(s) 685, 1131
PspN4I GGNNCC 2 cut(s) 470, 524
PspPI GGNCC 4 cut(s) 160, 277, 469, 750
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 1 cut(s) 850
PsuI RGATCY 1 cut(s) 572
RruI TCGCGA 1 cut(s) 107
RsaI GTAC 3 cut(s) 524, 681, 1201
RsaNI GTAC 3 cut(s) 523, 680, 1200
RseI CAYNNNNRTG 5 cut(s) 204, 360, 423, 645, 937
SaqAI TTAA 4 cut(s) 366, 852, 1259, 1330
SatI GCNGC 4 cut(s) 720, 846, 1241, 1301
Sau96I GGNCC 4 cut(s) 160, 277, 469, 750
ScaI AGTACT 1 cut(s) 1201
SchI GAGTC 3 cut(s) 113, 317, 938
ScrFI CCNGG 3 cut(s) 687, 861, 1133
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 1 cut(s) 992
SfcI CTRYAG 2 cut(s) 846, 894
SinI GGWCC 2 cut(s) 277, 750
SmiMI CAYNNNNRTG 5 cut(s) 204, 360, 423, 645, 937
SmlI CTYRAG 2 cut(s) 272, 281
SmoI CTYRAG 2 cut(s) 272, 281
SphI GCATGC 1 cut(s) 802
Sse9I AATT 9 cut(s) 237, 377, 440, 627, 889, 904, 1006, 1149, 1327
SsiI CCGC 4 cut(s) 242, 683, 722, 1062
SspI AATATT 1 cut(s) 1213
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 3 cut(s) 685, 859, 1131
StyI CCWWGG 1 cut(s) 1248
TaaI ACNGT 2 cut(s) 396, 463
TaqI TCGA 6 cut(s) 204, 402, 414, 734, 993, 1185
TasI AATT 9 cut(s) 237, 377, 440, 627, 889, 904, 1006, 1149, 1327
TatI WGTACW 1 cut(s) 1199
TfiI GAWTC 1 cut(s) 1317
Tru1I TTAA 4 cut(s) 366, 852, 1259, 1330
Tru9I TTAA 4 cut(s) 366, 852, 1259, 1330
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 930
TseI GCWGC 4 cut(s) 719, 845, 1240, 1300
Tsp45I GTSAC 1 cut(s) 930
TspDTI ATGAA 6 cut(s) 209, 776, 991, 1019, 1262, 1270
TspRI CASTG 1 cut(s) 466
Van91I CCANNNNNTGG 1 cut(s) 863
VpaK11BI GGWCC 2 cut(s) 277, 750
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 4 cut(s) 237, 440, 889, 1006
XceI RCATGY 4 cut(s) 194, 410, 422, 802
XspI CTAG 1 cut(s) 488
ZrmI AGTACT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.