Rh1BG147100

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000404
Physical Location & Seq
Forward (+)
24210249 .. 24210842
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG147100.1

Sequence Viewer

Length: 594 bp
ATGCAATGCTTGAAGTACAACAAGGATGATCGTTGGTTTGAAGAGATACGCGGCATGTTGATGGTTGTCGCTACCATGATATCAACCATGACTTTCCAAGTAGCCATCAACCCACCAGGTGGTGTTTGGCAAGATCATGTCAAATCATTTAGCATTGAAGGAACAAAATACTGTACAGAAAACCCTTGCTTTCCTGGAACTGCAGTGTTGGGCGATGTGTGGACACCCGACATGCGGGAATTCATTAAGTACAACACCATCTCTTTCGTTGCTTCTCTCAGTGTTACCATTTTTCTTATCAGCGGCTTTCCTCTGACAAATCGGATATGTATATGGATCTTATCAATGGCTATGTGCATCACTATCACATTCACTGCTCTTACTTACCTAACTGGTGTTTACTTGGTGATGCCATTTGCTGTTGCGGATGATGTTGACAGTAAGTACAGACCATTAGGAGTTCAGGTTTGGATTGGATTGCTTGCTATGGTTGGTTTATTCCATACTTTTCGTTTTCTCACTTGGCTTGTGAAGAAGGTGAACTCCAAGTTCAGAGATAAGAGCAGGGCAAATGGTATGTCACTATGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

197

Amino Acids

22.36

Weight (kDa)

8.75

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 11 - 136 6.2e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 1 cut(s) 51
AciI CCGC 4 cut(s) 51, 235, 303, 425
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 4 cut(s) 17, 175, 251, 446
AfiI CCNNNNNNNGG 2 cut(s) 119, 234
AgsI TTSAA 3 cut(s) 13, 41, 158
AjnI CCWGG 2 cut(s) 115, 193
AlwI GGATC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 239
ArsI GACNNNNNNTTYG 1 cut(s) 563
AsuHPI GGTGA 2 cut(s) 418, 550
BccI CCATC 3 cut(s) 55, 113, 266
BciT130I CCWGG 2 cut(s) 117, 195
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 52, 304
BlsI GCNGC 2 cut(s) 53, 305
Bme1390I CCNGG 2 cut(s) 117, 195
BmrFI CCNGG 2 cut(s) 117, 195
BmsI GCATC 2 cut(s) 366, 399
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 234
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 117, 195
BseGI GGATG 2 cut(s) 31, 433
BseLI CCNNNNNNNGG 2 cut(s) 119, 234
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 119, 234
Bsp1407I TGTACA 1 cut(s) 173
Bsp143I GATC 3 cut(s) 28, 133, 336
BspACI CCGC 4 cut(s) 51, 235, 303, 425
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 173
BsrI ACTGG 1 cut(s) 397
BssMI GATC 3 cut(s) 28, 133, 336
Bst2UI CCWGG 2 cut(s) 117, 195
Bst4CI ACNGT 2 cut(s) 173, 440
Bst6I CTCTTC 1 cut(s) 36
BstAUI TGTACA 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 31, 433
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 3 cut(s) 31, 136, 339
BstMBI GATC 3 cut(s) 28, 133, 336
BstNI CCWGG 2 cut(s) 117, 195
BstNSI RCATGY 2 cut(s) 58, 235
BstSCI CCNGG 2 cut(s) 115, 193
BstSFI CTRYAG 1 cut(s) 201
BstUI CGCG 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 31, 433
BtsI GCAGTG 2 cut(s) 210, 372
BtsIMutI CAGTG 3 cut(s) 210, 286, 372
Cac8I GCNNGC 1 cut(s) 483
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 4 cut(s) 16, 174, 250, 445
CviAII CATG 5 cut(s) 55, 76, 88, 137, 232
CviJI RGCY 4 cut(s) 104, 306, 350, 526
CviKI_1 RGCY 4 cut(s) 104, 306, 350, 526
CviQI GTAC 4 cut(s) 16, 174, 250, 445
DdeI CTNAG 1 cut(s) 278
DpnI GATC 3 cut(s) 30, 135, 338
DpnII GATC 3 cut(s) 28, 133, 336
DraIII CACNNNGTG 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 115, 193
EcoRV GATATC 1 cut(s) 81
FaeI CATG 5 cut(s) 58, 79, 91, 140, 235
FatI CATG 5 cut(s) 54, 75, 87, 136, 231
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 52, 304
FokI GGATG 2 cut(s) 38, 440
Fsp4HI GCNGC 2 cut(s) 52, 304
GluI GCNGC 2 cut(s) 52, 304
Hin1II CATG 5 cut(s) 58, 79, 91, 140, 235
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HphI GGTGA 2 cut(s) 418, 550
Hpy166II GTNNAC 4 cut(s) 222, 400, 436, 541
Hpy188I TCNGA 3 cut(s) 315, 324, 554
Hpy8I GTNNAC 4 cut(s) 222, 400, 436, 541
HpyAV CCTTC 2 cut(s) 152, 529
HpyCH4III ACNGT 2 cut(s) 173, 440
HpyCH4V TGCA 3 cut(s) 4, 203, 357
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 5 cut(s) 58, 79, 91, 140, 235
Kzo9I GATC 3 cut(s) 28, 133, 336
LpnPI CCDG 7 cut(s) 102, 129, 180, 207, 378, 449, 550
LweI GCATC 2 cut(s) 366, 399
MabI ACCWGGT 1 cut(s) 115
MaeIII GTNAC 2 cut(s) 283, 579
MalI GATC 3 cut(s) 30, 135, 338
MboI GATC 3 cut(s) 28, 133, 336
MboII GAAGA 2 cut(s) 53, 544
MflI RGATCY 1 cut(s) 336
MluCI AATT 1 cut(s) 239
MnlI CCTC 1 cut(s) 321
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 117, 195
MvaI CCWGG 2 cut(s) 117, 195
MvnI CGCG 1 cut(s) 51
NdeII GATC 3 cut(s) 28, 133, 336
NlaIII CATG 5 cut(s) 58, 79, 91, 140, 235
NmuCI GTSAC 1 cut(s) 579
NspI RCATGY 2 cut(s) 58, 235
PflMI CCANNNNNTGG 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 193
PkrI GCNGC 2 cut(s) 53, 305
Psp6I CCWGG 2 cut(s) 115, 193
PspGI CCWGG 2 cut(s) 115, 193
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 4 cut(s) 17, 175, 251, 446
RsaNI GTAC 4 cut(s) 16, 174, 250, 445
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 52, 304
Sau3AI GATC 3 cut(s) 28, 133, 336
ScrFI CCNGG 2 cut(s) 117, 195
SetI ASST 4 cut(s) 121, 390, 468, 540
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 2 cut(s) 366, 399
SfcI CTRYAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 1 cut(s) 239
SsiI CCGC 4 cut(s) 51, 235, 303, 425
StyD4I CCNGG 2 cut(s) 115, 193
TaaI ACNGT 2 cut(s) 173, 440
TasI AATT 1 cut(s) 239
TatI WGTACW 4 cut(s) 15, 173, 249, 444
TauI GCSGC 2 cut(s) 54, 306
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 3 cut(s) 210, 286, 379
TseFI GTSAC 1 cut(s) 579
Tsp45I GTSAC 1 cut(s) 579
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 3 cut(s) 210, 286, 379
Van91I CCANNNNNTGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 239
XceI RCATGY 2 cut(s) 58, 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.