Rh1AG179000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000404
Physical Location & Seq
Forward (+)
34014642 .. 34017859
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG179000.1

Sequence Viewer

Length: 1065 bp
ATGGACGCATGTATCGATAAAAACAAAAAAGATGAGTATGAGCAACAAGTATTCTCAACAACAGCACCTGTCTCGCCACCATCAGAATCCAGTATAGTCGGAAAGAGAACAATCAAAACATGGTTGTGCATGAAATTAATGCAATGCTTGAAGTACAACAAGGGTGATCGTTGGTTTGAAGAAATACGCGGCATGTTGATGGTTGTCGCTACCATGATATCAACCATGACTTTCCAAGTCAACCCACCAGGTGGTGTTTGGCAAGATAATGTCAGATCATTTAGCATTGAAGAAAGCAATTATTGTTCAACAGAAGACCCTTGCTATCCTGGAGCTGCAGTGTTGGGAGATGTGTGGGAACCCGACATGCGGGAATTTATTAAGTACAACACCATCTCTTTTGTTGCTTCTCTCAGTGTTACCGTGTTTCTTATCAGCGGCTTTCCTCTGACAAATCGGATATGTATATGGATCTTATCAATGGCTATGTGCATCACTATCACTTTCACTGCTCTTACTTACCTAACTGGTGTTGACTTGGTGATGCCATTTGCTGTTGCGGATGATGTTGACAGTAAGTACAGACCATTAGGAGTTCAGGTTTGGATTGGATTGCTTGCTATGGTTGGTTTATTCCATACTTTTCGTTTTCTCACTTGGCTTGTGCAGAAGGTGAACTCCAAGTTCAGAGATAAGAGCAGGGCAAATGAGCAGGGTCGTCTATTGATCTATCCTAAGAAAACTAAGCTCGACCGTCCTAAGGGGTCAAAGAACAAACACAAAGCTGCAAGGAAGGAGGAGGCTGTTGCAAAGTCTTGCTCCAAGGTGAAGGGTCGGAAAAGATTCCTTAGAATGCTTAAGGAGGAAGTTCAAGAAGAAGCCTGTCCTTTGGAAGGCCCAATGGGAGCTGCAAACTTGATGGTTTCGACTGATGGAATAGCTGAGAAGGATGACATGGTGGGAATGGAAGAGTTGTGTGTTCTTCCTAACCCAAATGTTGATGCTTCTGTTTCTTTTGTGGTGGAGGATGTGACTACCTCAACAAATGTTGTTAATTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

354

Amino Acids

39.71

Weight (kDa)

7.95

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 57 - 178 1.4e-13 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 189
AciI CCGC 4 cut(s) 189, 370, 438, 560
AclWI GGATC 1 cut(s) 479
AcsI RAATTY 1 cut(s) 374
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 3 cut(s) 155, 386, 581
AfiI CCNNNNNNNGG 4 cut(s) 251, 369, 760, 893
AflII CTTAAG 1 cut(s) 857
AgsI TTSAA 5 cut(s) 151, 179, 290, 309, 872
AjnI CCWGG 2 cut(s) 247, 328
AluBI AGCT 5 cut(s) 335, 748, 785, 908, 941
AluI AGCT 5 cut(s) 335, 748, 785, 908, 941
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 1 cut(s) 895
ApeKI GCWGC 3 cut(s) 335, 785, 908
ApoI RAATTY 1 cut(s) 374
AseI ATTAAT 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 896
AsuHPI GGTGA 4 cut(s) 176, 553, 685, 838
AxyI CCTNAGG 1 cut(s) 759
BaeI ACNNNNGTAYC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 322, 772, 895
BccI CCATC 5 cut(s) 88, 193, 401, 913, 926
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BciT130I CCWGG 2 cut(s) 249, 330
BcoDI GTCTC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 336
BfrI CTTAAG 1 cut(s) 857
BisI GCNGC 5 cut(s) 190, 336, 439, 786, 909
BlsI GCNGC 5 cut(s) 191, 337, 440, 787, 910
Bme1390I CCNGG 2 cut(s) 249, 330
BmgT120I GGNCC 1 cut(s) 896
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 249, 330
BmsI GCATC 3 cut(s) 501, 534, 991
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 822
BsaXI ACNNNNNCTCC 4 cut(s) 324, 354, 585, 615
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 369, 760, 893
Bse1I ACTGG 2 cut(s) 90, 532
Bse21I CCTNAGG 1 cut(s) 759
Bse3DI GCAATG 1 cut(s) 149
BseBI CCWGG 2 cut(s) 249, 330
BseCI ATCGAT 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 822
BseGI GGATG 3 cut(s) 568, 955, 1033
BseLI CCNNNNNNNGG 4 cut(s) 251, 369, 760, 893
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 427, 933
BseNI ACTGG 2 cut(s) 90, 532
BseRI GAGGAG 1 cut(s) 812
BseXI GCAGC 3 cut(s) 322, 772, 895
BsgI GTGCAG 1 cut(s) 686
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 754
BshFI GGCC 1 cut(s) 897
BshVI ATCGAT 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 754
BslI CCNNNNNNNGG 4 cut(s) 251, 369, 760, 893
BsmAI GTCTC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 858
BsnI GGCC 1 cut(s) 897
Bsp143I GATC 4 cut(s) 166, 275, 471, 726
BspACI CCGC 4 cut(s) 189, 370, 438, 560
BspANI GGCC 1 cut(s) 897
BspCNI CTCAG 2 cut(s) 426, 934
BspDI ATCGAT 1 cut(s) 15
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 1 cut(s) 479
BspTI CTTAAG 1 cut(s) 857
BsrDI GCAATG 1 cut(s) 149
BsrI ACTGG 2 cut(s) 90, 532
BssECI CCNNGG 1 cut(s) 822
BssMI GATC 4 cut(s) 166, 275, 471, 726
BssT1I CCWWGG 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 249, 330
Bst4CI ACNGT 3 cut(s) 424, 575, 755
Bst6I CTCTTC 1 cut(s) 963
BstAFI CTTAAG 1 cut(s) 857
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 6 cut(s) 413, 735, 744, 759, 848, 942
BstENI CCTNNNNNAGG 1 cut(s) 891
BstF5I GGATG 3 cut(s) 568, 955, 1033
BstFNI CGCG 1 cut(s) 189
BstKTI GATC 4 cut(s) 169, 278, 474, 729
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 4 cut(s) 166, 275, 471, 726
BstMCI CGRYCG 1 cut(s) 754
BstNI CCWGG 2 cut(s) 249, 330
BstNSI RCATGY 3 cut(s) 12, 196, 370
BstSCI CCNGG 2 cut(s) 247, 328
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 322, 772, 895
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
Bsu15I ATCGAT 1 cut(s) 15
Bsu36I CCTNAGG 1 cut(s) 759
BsuRI GGCC 1 cut(s) 897
BsuTUI ATCGAT 1 cut(s) 15
BtsCI GGATG 3 cut(s) 568, 955, 1033
BtsI GCAGTG 2 cut(s) 345, 507
BtsIMutI CAGTG 3 cut(s) 345, 421, 507
Cac8I GCNNGC 1 cut(s) 618
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 896
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 1 cut(s) 14
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 3 cut(s) 154, 385, 580
CviAII CATG 8 cut(s) 9, 120, 130, 193, 214, 226, 367, 955
CviQI GTAC 3 cut(s) 154, 385, 580
DdeI CTNAG 6 cut(s) 413, 735, 744, 759, 848, 942
DpnI GATC 4 cut(s) 168, 277, 473, 728
DpnII GATC 4 cut(s) 166, 275, 471, 726
DraIII CACNNNGTG 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Eco130I CCWWGG 1 cut(s) 822
Eco32I GATATC 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 891
EcoRII CCWGG 2 cut(s) 247, 328
EcoRV GATATC 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 8 cut(s) 12, 123, 133, 196, 217, 229, 370, 958
FatI CATG 8 cut(s) 8, 119, 129, 192, 213, 225, 366, 954
FauI CCCGC 1 cut(s) 363
Fnu4HI GCNGC 5 cut(s) 190, 336, 439, 786, 909
FokI GGATG 3 cut(s) 575, 962, 1040
Fsp4HI GCNGC 5 cut(s) 190, 336, 439, 786, 909
GluI GCNGC 5 cut(s) 190, 336, 439, 786, 909
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 897
HgaI GACGC 1 cut(s) 14
Hin1II CATG 8 cut(s) 12, 123, 133, 196, 217, 229, 370, 958
HincII GTYRAC 3 cut(s) 241, 535, 571
HindII GTYRAC 3 cut(s) 241, 535, 571
HinfI GANTC 2 cut(s) 86, 843
HphI GGTGA 4 cut(s) 176, 553, 685, 838
Hpy166II GTNNAC 4 cut(s) 241, 535, 571, 676
Hpy188I TCNGA 7 cut(s) 85, 101, 275, 450, 459, 689, 837
Hpy188III TCNNGA 1 cut(s) 872
Hpy8I GTNNAC 4 cut(s) 241, 535, 571, 676
HpyAV CCTTC 5 cut(s) 664, 787, 823, 887, 940
HpyCH4III ACNGT 3 cut(s) 424, 575, 755
HpyCH4V TGCA 8 cut(s) 129, 142, 338, 492, 667, 788, 809, 911
HpyF3I CTNAG 6 cut(s) 413, 735, 744, 759, 848, 942
Hsp92II CATG 8 cut(s) 12, 123, 133, 196, 217, 229, 370, 958
Kzo9I GATC 4 cut(s) 166, 275, 471, 726
LmnI GCTCC 3 cut(s) 332, 824, 905
Lsp1109I GCAGC 3 cut(s) 322, 772, 895
LweI GCATC 3 cut(s) 501, 534, 991
MabI ACCWGGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 418, 1030
MalI GATC 4 cut(s) 168, 277, 473, 728
MboI GATC 4 cut(s) 166, 275, 471, 726
MboII GAAGA 6 cut(s) 191, 302, 326, 887, 974, 980
MflI RGATCY 1 cut(s) 471
MluCI AATT 4 cut(s) 134, 298, 374, 1054
MmeI TCCRAC 2 cut(s) 79, 815
MnlI CCTC 6 cut(s) 456, 790, 793, 856, 1018, 1048
MroXI GAANNNNTTC 1 cut(s) 842
MseI TTAA 4 cut(s) 137, 381, 858, 1053
MslI CAYNNNNRTG 2 cut(s) 124, 197
MspA1I CMGCKG 1 cut(s) 438
MspCI CTTAAG 1 cut(s) 857
MspR9I CCNGG 2 cut(s) 249, 330
Mva1269I GAATGC 1 cut(s) 858
MvaI CCWGG 2 cut(s) 249, 330
MvnI CGCG 1 cut(s) 189
NdeII GATC 4 cut(s) 166, 275, 471, 726
NlaIII CATG 8 cut(s) 12, 123, 133, 196, 217, 229, 370, 958
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 1030
NspI RCATGY 3 cut(s) 12, 196, 370
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 858
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 86, 843
PflMI CCANNNNNTGG 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 5 cut(s) 191, 337, 440, 787, 910
PshBI ATTAAT 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 247, 328
PspGI CCWGG 2 cut(s) 247, 328
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 896
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 3 cut(s) 155, 386, 581
RsaNI GTAC 3 cut(s) 154, 385, 580
RseI CAYNNNNRTG 2 cut(s) 124, 197
SaqAI TTAA 4 cut(s) 137, 381, 858, 1053
SatI GCNGC 5 cut(s) 190, 336, 439, 786, 909
Sau3AI GATC 4 cut(s) 166, 275, 471, 726
Sau96I GGNCC 1 cut(s) 896
ScrFI CCNGG 2 cut(s) 249, 330
SexAI ACCWGGT 1 cut(s) 247
SfaNI GCATC 3 cut(s) 501, 534, 991
SfcI CTRYAG 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 124, 197
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 4 cut(s) 134, 298, 374, 1054
SsiI CCGC 4 cut(s) 189, 370, 438, 560
StyD4I CCNGG 2 cut(s) 247, 328
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 3 cut(s) 424, 575, 755
TaqI TCGA 3 cut(s) 15, 750, 926
TasI AATT 4 cut(s) 134, 298, 374, 1054
TatI WGTACW 3 cut(s) 153, 384, 579
TauI GCSGC 2 cut(s) 192, 441
TfiI GAWTC 2 cut(s) 86, 843
Tru1I TTAA 4 cut(s) 137, 381, 858, 1053
Tru9I TTAA 4 cut(s) 137, 381, 858, 1053
TscAI CASTG 3 cut(s) 345, 421, 514
TseFI GTSAC 1 cut(s) 1030
TseI GCWGC 3 cut(s) 335, 785, 908
Tsp45I GTSAC 1 cut(s) 1030
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 3 cut(s) 345, 421, 514
Van91I CCANNNNNTGG 1 cut(s) 251
Vha464I CTTAAG 1 cut(s) 857
VspI ATTAAT 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 891
XapI RAATTY 1 cut(s) 374
XceI RCATGY 3 cut(s) 12, 196, 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.