Prupe.3G154900_v2.0.a1

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000404
Physical Location & Seq
Forward (+)
17128488 .. 17130062
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G154900.1

Sequence Viewer

Length: 726 bp
ATGGAAACAAAAAGAACTACTGCCGCTGCTGTTCAGATTCAGCAGCACCCAGCAATAGCAACAGCTTGGTGGCTGATAAATAGACTGGTAAATTGCTTGGAATACCCAAAAACTTGGTTGGAAGAGACACGTGGCATGCTGATGATTGTGGCAACCATGATATCGACTACAACTTTCCAAGCTGCAGTTAACCCACCTGGTGGTGTTTGGCAATGCAATAATACAAATAGTAGCGCTAGAGGCACTACTTATTGCACCCAAAATAACATATGCTTGGCTGGAACTTCAGTGGCAGGCAGCGCCTTCCCCAATGAATTCCTCTTGTTCGTAACATTCAATACCATCTCGTTTCTTGCTTCTCTCAGTGTCAACCTTTTGCTTGTTGGCGGATTTCCCCTCCGGAATCGCGTAATTATGTGGCTTTTATCAATGGCAATGTGTCTCACTCTCACTTCTATGGTGCTCACCTTTTTACAGGCATTCTCGTTGGTGGTTCCAAATACTGACATTCTCGTTTCATCAAGAGTTAGATCCCGTATATCCGCTTTGTTGGTTTGGATTGCGTTGCTTCTAACCATCGCTTCAATCCACACCATTCGCTTTATCATTTGGTTGTCAAGGAAGTTGTGGGGCAGGTTCAAGCATACGATCCCAAAAAGCCTCAGGAAAGTGGTTGATAATTTGGTGGATAGTTCGAGAGCACGTCACCGTATCAACAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

242

Amino Acids

27.02

Weight (kDa)

10.88

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 624
AccB7I CCANNNNNTGG 1 cut(s) 200
AccII CGCG 1 cut(s) 408
AccIII TCCGGA 1 cut(s) 399
AciI CCGC 3 cut(s) 24, 387, 543
AclWI GGATC 2 cut(s) 525, 643
AcsI RAATTY 2 cut(s) 314, 719
AcuI CTGAAG 1 cut(s) 270
AcvI CACGTG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 200
AfeI AGCGCT 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 3 cut(s) 337, 585, 640
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 2 cut(s) 65, 182
AluI AGCT 2 cut(s) 65, 182
Alw21I GWGCWC 2 cut(s) 465, 703
Alw26I GTCTC 2 cut(s) 119, 446
AlwI GGATC 2 cut(s) 525, 643
Aor13HI TCCGGA 1 cut(s) 399
Aor51HI AGCGCT 1 cut(s) 235
ApeKI GCWGC 4 cut(s) 26, 43, 182, 297
ApoI RAATTY 2 cut(s) 314, 719
AspLEI GCGC 2 cut(s) 236, 302
AsuHPI GGTGA 2 cut(s) 457, 698
AxyI CCTNAGG 1 cut(s) 662
BbrPI CACGTG 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 465, 703
BbvI GCAGC 4 cut(s) 13, 55, 169, 309
BccI CCATC 2 cut(s) 350, 584
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 119, 446
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 2 cut(s) 237, 303
BfuAI ACCTGC 1 cut(s) 624
BisI GCNGC 5 cut(s) 24, 27, 44, 183, 298
BlsI GCNGC 5 cut(s) 25, 28, 45, 184, 299
Bme1390I CCNGG 1 cut(s) 198
BmgBI CACGTC 1 cut(s) 704
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 399
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 90
Bse21I CCTNAGG 1 cut(s) 662
Bse3DI GCAATG 2 cut(s) 218, 441
BseAI TCCGGA 1 cut(s) 399
BseBI CCWGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 2 cut(s) 218, 441
BseMII CTCAG 2 cut(s) 376, 676
BseNI ACTGG 1 cut(s) 90
BseXI GCAGC 4 cut(s) 13, 55, 169, 309
BseYI CCCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 465, 703
BsiSI CCGG 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 2 cut(s) 119, 446
BsmI GAATGC 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 465, 703
Bsp13I TCCGGA 1 cut(s) 399
Bsp143I GATC 2 cut(s) 530, 648
BspACI CCGC 3 cut(s) 24, 387, 543
BspCNI CTCAG 2 cut(s) 375, 675
BspEI TCCGGA 1 cut(s) 399
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 495
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 624
BspPI GGATC 2 cut(s) 525, 643
BsrDI GCAATG 2 cut(s) 218, 441
BsrI ACTGG 1 cut(s) 90
BssMI GATC 2 cut(s) 530, 648
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 710
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 137, 295
BstDEI CTNAG 2 cut(s) 362, 662
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 2 cut(s) 237, 303
BstHHI GCGC 2 cut(s) 236, 302
BstKTI GATC 2 cut(s) 533, 651
BstMAI GTCTC 2 cut(s) 119, 446
BstMBI GATC 2 cut(s) 530, 648
BstMWI GCNNNNNNNGC 2 cut(s) 240, 299
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 4 cut(s) 13, 55, 169, 309
BstX2I RGATCY 1 cut(s) 530
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 1 cut(s) 530
Bsu36I CCTNAGG 1 cut(s) 662
BtgZI GCGATG 1 cut(s) 562
BtrI CACGTC 1 cut(s) 704
BtsIMutI CAGTG 2 cut(s) 294, 370
BveI ACCTGC 1 cut(s) 624
Cac8I GCNNGC 2 cut(s) 137, 295
CfoI GCGC 2 cut(s) 236, 302
CsiI ACCWGGT 1 cut(s) 196
CviAII CATG 2 cut(s) 136, 157
CviJI RGCY 6 cut(s) 65, 73, 182, 278, 421, 660
CviKI_1 RGCY 6 cut(s) 65, 73, 182, 278, 421, 660
DdeI CTNAG 2 cut(s) 362, 662
DpnI GATC 2 cut(s) 532, 650
DpnII GATC 2 cut(s) 530, 648
DraIII CACNNNGTG 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 402
Eco32I GATATC 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 270
Eco72I CACGTG 1 cut(s) 131
Eco81I CCTNAGG 1 cut(s) 662
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 162
FaeI CATG 2 cut(s) 139, 160
FaiI YATR 8 cut(s) 137, 158, 269, 271, 416, 458, 539, 645
FatI CATG 2 cut(s) 135, 156
FauNDI CATATG 1 cut(s) 269
Fnu4HI GCNGC 5 cut(s) 24, 27, 44, 183, 298
Fsp4HI GCNGC 5 cut(s) 24, 27, 44, 183, 298
FspBI CTAG 1 cut(s) 237
GlaI GCGC 2 cut(s) 235, 301
GluI GCNGC 5 cut(s) 24, 27, 44, 183, 298
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 2 cut(s) 237, 303
HapII CCGG 1 cut(s) 400
HhaI GCGC 2 cut(s) 236, 302
Hin1II CATG 2 cut(s) 139, 160
Hin6I GCGC 2 cut(s) 234, 300
HinP1I GCGC 2 cut(s) 234, 300
HincII GTYRAC 2 cut(s) 190, 370
HindII GTYRAC 2 cut(s) 190, 370
HinfI GANTC 2 cut(s) 37, 403
HpaI GTTAAC 1 cut(s) 190
HpaII CCGG 1 cut(s) 400
HphI GGTGA 2 cut(s) 457, 698
Hpy166II GTNNAC 2 cut(s) 190, 370
Hpy188I TCNGA 2 cut(s) 36, 725
Hpy188III TCNNGA 4 cut(s) 400, 522, 664, 696
Hpy8I GTNNAC 2 cut(s) 190, 370
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 710
HpyCH4IV ACGT 2 cut(s) 130, 703
HpyCH4V TGCA 3 cut(s) 185, 216, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 299
HpyF3I CTNAG 2 cut(s) 362, 662
HpySE526I ACGT 2 cut(s) 130, 703
Hsp92II CATG 2 cut(s) 139, 160
HspAI GCGC 2 cut(s) 234, 300
Kpn2I TCCGGA 1 cut(s) 399
KspAI GTTAAC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 530, 648
Lsp1109I GCAGC 4 cut(s) 13, 55, 169, 309
MabI ACCWGGT 1 cut(s) 196
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 130, 703
MaeIII GTNAC 2 cut(s) 328, 704
MalI GATC 2 cut(s) 532, 650
MboI GATC 2 cut(s) 530, 648
MboII GAAGA 1 cut(s) 134
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 2 cut(s) 465, 703
MluCI AATT 5 cut(s) 91, 314, 411, 679, 719
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 4 cut(s) 233, 329, 407, 671
MroI TCCGGA 1 cut(s) 399
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 140, 455
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 240, 299
NdeI CATATG 1 cut(s) 269
NdeII GATC 2 cut(s) 530, 648
NlaIII CATG 2 cut(s) 139, 160
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 704
NspI RCATGY 1 cut(s) 139
PaeI GCATGC 1 cut(s) 139
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 37, 403
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 5 cut(s) 25, 28, 45, 184, 299
PmaCI CACGTG 1 cut(s) 131
PmlI CACGTG 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 196
PspCI CACGTG 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 495
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 530
RseI CAYNNNNRTG 2 cut(s) 140, 455
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 5 cut(s) 24, 27, 44, 183, 298
Sau3AI GATC 2 cut(s) 530, 648
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 2 cut(s) 465, 703
SetI ASST 8 cut(s) 67, 133, 184, 199, 375, 470, 638, 706
SexAI ACCWGGT 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 140, 455
SphI GCATGC 1 cut(s) 139
Sse9I AATT 5 cut(s) 91, 314, 411, 679, 719
SsiI CCGC 3 cut(s) 24, 387, 543
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 710
TaiI ACGT 2 cut(s) 133, 706
TaqI TCGA 2 cut(s) 164, 695
TasI AATT 5 cut(s) 91, 314, 411, 679, 719
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 2 cut(s) 37, 403
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 294, 370
TseFI GTSAC 1 cut(s) 704
TseI GCWGC 4 cut(s) 26, 43, 182, 297
Tsp45I GTSAC 1 cut(s) 704
TspDTI ATGAA 2 cut(s) 327, 507
TspRI CASTG 2 cut(s) 294, 370
Van91I CCANNNNNTGG 1 cut(s) 200
XapI RAATTY 2 cut(s) 314, 719
XceI RCATGY 1 cut(s) 139
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.