Rmu_sc0001836.1_g000015

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001836.1
OG0000404
Physical Location & Seq
Reverse (-)
54842 .. 61302
6461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001836.1_g000015.1.cds

Sequence Viewer

Length: 822 bp
atgcctaccatgggatttgtgcccattttgggtgccaagagagtgtttggtgagattttggacagagggtggtttccagatgagactacttataccatattgatggatgggtatgtgaagcaggggaagctggttgaggctattaaggttatggatgagatggaggacaatgggattggttccaatgaggttacttatggagttatgattgaagcttattgtaaggaaaagaagttgggtgaagcggttaatttgcttaatgatatggcggagaagaggtgcctgtgtagaagtaccgtattggaatcaagtcttcagggatcccagatgggcactgatggtggatatcggaagggatggtcaagcatgctgacgttcgtctgggttaatgtcttagtaaagactttgcttggccaccttgaattttccaaaatcattctcactcataatccaagacttgccacagagttggagtccttaaggcgctcacccctgcacttggcttccgcagcaggacacaaggagctcgtacaagttttgttgcttgcatttcctgatgcatgcttgtttcatgatcaggaggggagaatccctctacactatgccgccatgagaggacgagttgaggtggtcaaggagctgatccgtgcaaagcctcagtccattgctcttgtggttatggatatatcaggagaaacaagtttgcatttatgtgttaaacataaccatctggactgcttgaaaatgttagtgacagaagtgggagagaataacgacatactcaactcaggaactggctctaatagtctaatgctagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

273

Amino Acids

30.25

Weight (kDa)

6.0

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 279
AciI CCGC 4 cut(s) 245, 269, 507, 606
AclWI GGATC 3 cut(s) 315, 328, 637
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 295, 531
AfiI CCNNNNNNNGG 3 cut(s) 11, 29, 499
AflII CTTAAG 1 cut(s) 478
AgsI TTSAA 3 cut(s) 212, 422, 742
AluBI AGCT 4 cut(s) 130, 215, 526, 640
AluI AGCT 4 cut(s) 130, 215, 526, 640
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 3 cut(s) 315, 328, 637
AlwNI CAGNNNCTG 1 cut(s) 794
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AspLEI GCGC 1 cut(s) 486
AsuHPI GGTGA 3 cut(s) 62, 251, 480
AsuNHI GCTAGC 1 cut(s) 814
BaeGI GKGCMC 2 cut(s) 24, 335
BalI TGGCCA 1 cut(s) 414
BamHI GGATCC 1 cut(s) 320
BanI GGYRCC 2 cut(s) 32, 279
BanII GRGCYC 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 1 cut(s) 521
BccI CCATC 7 cut(s) 97, 101, 154, 322, 332, 351, 735
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 815
BfoI RGCGCY 1 cut(s) 487
BfrI CTTAAG 1 cut(s) 478
BisI GCNGC 2 cut(s) 510, 606
BlsI GCNGC 2 cut(s) 511, 607
BmiI GGNNCC 4 cut(s) 34, 181, 281, 322
BmsI GCATC 1 cut(s) 547
BmtI GCTAGC 1 cut(s) 818
BoxI GACNNNNGTC 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BsaJI CCNNGG 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 29, 499
Bse1I ACTGG 1 cut(s) 799
Bse3DI GCAATG 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 3 cut(s) 112, 160, 362
BseLI CCNNNNNNNGG 3 cut(s) 11, 29, 499
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 671, 801
BseNI ACTGG 1 cut(s) 799
BseSI GKGCMC 2 cut(s) 24, 335
BseXI GCAGC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 479
BshFI GGCC 1 cut(s) 414
BshNI GGYRCC 2 cut(s) 32, 279
BsiHKAI GWGCWC 1 cut(s) 528
BslI CCNNNNNNNGG 3 cut(s) 11, 29, 499
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 24, 335, 528
Bsp143I GATC 3 cut(s) 320, 574, 642
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 4 cut(s) 245, 269, 507, 606
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 2 cut(s) 670, 800
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 34, 181, 281, 322
BspOI GCTAGC 1 cut(s) 818
BspPI GGATC 3 cut(s) 315, 328, 637
BspT107I GGYRCC 2 cut(s) 32, 279
BspTI CTTAAG 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 1 cut(s) 799
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 3 cut(s) 320, 574, 642
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 269
BstAFI CTTAAG 1 cut(s) 478
BstC8I GCNNGC 4 cut(s) 368, 546, 562, 816
BstDEI CTNAG 3 cut(s) 394, 657, 787
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 3 cut(s) 112, 160, 362
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 3 cut(s) 323, 577, 645
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 320, 574, 642
BstMWI GCNNNNNNNGC 2 cut(s) 127, 509
BstNSI RCATGY 2 cut(s) 370, 564
BstPAI GACNNNNGTC 1 cut(s) 377
BstSLI GKGCMC 2 cut(s) 24, 335
BstV1I GCAGC 1 cut(s) 521
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 320
BstXI CCANNNNNNTGG 2 cut(s) 103, 469
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 3 cut(s) 112, 160, 362
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 4 cut(s) 368, 546, 562, 816
CaiI CAGNNNCTG 1 cut(s) 794
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 486
Csp6I GTAC 2 cut(s) 294, 530
CviAII CATG 6 cut(s) 10, 367, 561, 572, 610, 819
CviJI RGCY 9 cut(s) 130, 140, 215, 414, 503, 526, 640, 655, 798
CviKI_1 RGCY 9 cut(s) 130, 140, 215, 414, 503, 526, 640, 655, 798
CviQI GTAC 2 cut(s) 294, 530
DdeI CTNAG 3 cut(s) 394, 657, 787
DpnI GATC 3 cut(s) 322, 576, 644
DpnII GATC 3 cut(s) 320, 574, 642
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 528
Eco32I GATATC 1 cut(s) 347
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 526
EcoRV GATATC 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 562
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 6 cut(s) 13, 370, 564, 575, 613, 822
FatI CATG 6 cut(s) 9, 366, 560, 571, 609, 818
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 2 cut(s) 510, 606
FokI GGATG 3 cut(s) 119, 167, 369
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 2 cut(s) 510, 606
FspBI CTAG 1 cut(s) 815
GlaI GCGC 1 cut(s) 485
GluI GCNGC 2 cut(s) 510, 606
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 1 cut(s) 414
HhaI GCGC 1 cut(s) 486
Hin1II CATG 6 cut(s) 13, 370, 564, 575, 613, 822
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 3 cut(s) 305, 473, 588
HphI GGTGA 3 cut(s) 62, 251, 480
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 7 cut(s) 77, 554, 572, 578, 690, 731, 789
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 5 cut(s) 496, 548, 560, 650, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 509
HpyF3I CTNAG 3 cut(s) 394, 657, 787
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 6 cut(s) 13, 370, 564, 575, 613, 822
HspAI GCGC 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 3 cut(s) 320, 574, 642
LmnI GCTCC 2 cut(s) 523, 637
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 815
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 190, 751
MalI GATC 3 cut(s) 322, 576, 644
MboI GATC 3 cut(s) 320, 574, 642
MboII GAAGA 2 cut(s) 286, 305
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 3 cut(s) 24, 335, 528
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 2 cut(s) 250, 422
MluNI TGGCCA 1 cut(s) 414
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 450
Mox20I TGGCCA 1 cut(s) 414
Mph1103I ATGCAT 1 cut(s) 562
MscI TGGCCA 1 cut(s) 414
MseI TTAA 6 cut(s) 144, 249, 258, 387, 479, 717
MslI CAYNNNNRTG 2 cut(s) 101, 711
Msp20I TGGCCA 1 cut(s) 414
MspCI CTTAAG 1 cut(s) 478
MwoI GCNNNNNNNGC 2 cut(s) 127, 509
NcoI CCATGG 1 cut(s) 9
NdeII GATC 3 cut(s) 320, 574, 642
NheI GCTAGC 1 cut(s) 814
NlaIII CATG 6 cut(s) 13, 370, 564, 575, 613, 822
NlaIV GGNNCC 4 cut(s) 34, 181, 281, 322
NmuCI GTSAC 1 cut(s) 751
NsiI ATGCAT 1 cut(s) 562
NspI RCATGY 2 cut(s) 370, 564
PaeI GCATGC 2 cut(s) 370, 564
PagI TCATGA 1 cut(s) 571
PfeI GAWTC 2 cut(s) 305, 588
PkrI GCNGC 2 cut(s) 511, 607
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PshAI GACNNNNGTC 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 528
PspN4I GGNNCC 4 cut(s) 34, 181, 281, 322
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 2 cut(s) 295, 531
RsaNI GTAC 2 cut(s) 294, 530
RseI CAYNNNNRTG 2 cut(s) 101, 711
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 6 cut(s) 144, 249, 258, 387, 479, 717
SatI GCNGC 2 cut(s) 510, 606
Sau3AI GATC 3 cut(s) 320, 574, 642
SchI GAGTC 1 cut(s) 482
SduI GDGCHC 3 cut(s) 24, 335, 528
SfaNI GCATC 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 101, 711
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
SphI GCATGC 2 cut(s) 370, 564
Sse9I AATT 2 cut(s) 250, 422
SsiI CCGC 4 cut(s) 245, 269, 507, 606
SspMI CTAG 1 cut(s) 815
SstI GAGCTC 1 cut(s) 528
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 377
TasI AATT 2 cut(s) 250, 422
TauI GCSGC 1 cut(s) 608
TfiI GAWTC 2 cut(s) 305, 588
Tru1I TTAA 6 cut(s) 144, 249, 258, 387, 479, 717
Tru9I TTAA 6 cut(s) 144, 249, 258, 387, 479, 717
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 1 cut(s) 560
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 1 cut(s) 340
Vha464I CTTAAG 1 cut(s) 478
XapI RAATTY 1 cut(s) 422
XceI RCATGY 2 cut(s) 370, 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XspI CTAG 1 cut(s) 815
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.