RLG00000033311

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000404
Physical Location & Seq
Reverse (-)
25582003 .. 25582512
510 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033311

Sequence Viewer

Length: 510 bp
ATGAAGACTGATATCATTAATAGCATTGCTCAGCCTAGTGGTGAAGCTAAAGAAAAGAGAATTCCAGTGGAGAAGGAATCCAACTGGCTAGAGAGGCAAAAGGGAATGCTCATTGGTGTGGCTACCGTGATCGCATCAATAGCGACTAGCCTTGTGGTTAGCTCACCTGGTAGGATTTGGCAAAATGCACTCAAAAATACAGCATTTTGCACTCCATCCCATCCCTGTATCTCTGGGACAACCGTCTCAAGTTATGTGCAGCCGGTAATCTTCCAGGAGTTCATCAAGAACGACTGCATATGCTTCACTTTCTCTATGTGCATTATTTTCCTCTTGCTCTGTGGATTTCCTTTCTACAAGAGAGCGATCGTGTGGATGTATACAATGCTCATGTGCCTTGCATTATTCTTCTGGAGCACGACCTTCTATAAGGCCATCAGCTTGGTAGATGCGAGCCCAGGTGTATCTCTTAGCAGCATAGACATCATGCCATTTATAGGAGGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

170

Amino Acids

18.74

Weight (kDa)

8.49

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 28 - 148 1.5e-08 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 497
AjnI CCWGG 3 cut(s) 166, 273, 457
AluBI AGCT 3 cut(s) 47, 162, 441
AluI AGCT 3 cut(s) 47, 162, 441
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 250
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 2 cut(s) 259, 474
ApoI RAATTY 1 cut(s) 60
AseI ATTAAT 1 cut(s) 18
AsuHPI GGTGA 2 cut(s) 53, 156
BanII GRGCYC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 271, 486
BccI CCATC 3 cut(s) 223, 228, 443
BciT130I CCWGG 3 cut(s) 168, 275, 459
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 3 cut(s) 36, 89, 147
BisI GCNGC 2 cut(s) 260, 475
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 261, 476
Bme1390I CCNGG 3 cut(s) 168, 275, 459
BmrFI CCNGG 3 cut(s) 168, 275, 459
BmsI GCATC 2 cut(s) 143, 439
BoxI GACNNNNGTC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 433
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 65, 89
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 3 cut(s) 168, 275, 459
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 3 cut(s) 215, 220, 381
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 65, 89
BseXI GCAGC 2 cut(s) 271, 486
BsgI GTGCAG 1 cut(s) 278
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 250
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 419, 458
Bsp143I GATC 2 cut(s) 129, 366
Bsp1720I GCTNAGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 2 cut(s) 65, 89
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 2 cut(s) 129, 366
BssNAI GTATAC 1 cut(s) 381
Bst1107I GTATAC 1 cut(s) 381
Bst2UI CCWGG 3 cut(s) 168, 275, 459
Bst4CI ACNGT 2 cut(s) 127, 244
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 2 cut(s) 30, 470
BstF5I GGATG 3 cut(s) 215, 220, 381
BstKTI GATC 2 cut(s) 132, 369
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 129, 366
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 2 cut(s) 94, 140
BstNI CCWGG 3 cut(s) 168, 275, 459
BstPAI GACNNNNGTC 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 166, 273, 457
BstV1I GCAGC 2 cut(s) 271, 486
BstV2I GAAGAC 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 442
BstZ17I GTATAC 1 cut(s) 381
BsuRI GGCC 1 cut(s) 434
BtsCI GGATG 3 cut(s) 215, 220, 381
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 166
CviAII CATG 2 cut(s) 391, 487
DdeI CTNAG 2 cut(s) 30, 470
DpnI GATC 2 cut(s) 131, 368
DpnII GATC 2 cut(s) 129, 366
Eco24I GRGCYC 1 cut(s) 458
Eco32I GATATC 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 3 cut(s) 166, 273, 457
EcoRV GATATC 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 458
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 2 cut(s) 394, 490
FaqI GGGAC 1 cut(s) 250
FatI CATG 2 cut(s) 390, 486
FauNDI CATATG 1 cut(s) 299
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 260, 475
FokI GGATG 3 cut(s) 202, 207, 388
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 2 cut(s) 260, 475
FspBI CTAG 3 cut(s) 36, 89, 147
GluI GCNGC 2 cut(s) 260, 475
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 1 cut(s) 434
HapII CCGG 1 cut(s) 263
Hin1II CATG 2 cut(s) 394, 490
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 53, 156
Hpy166II GTNNAC 1 cut(s) 381
Hpy188III TCNNGA 2 cut(s) 286, 412
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 67, 433
HpyCH4III ACNGT 2 cut(s) 127, 244
HpyCH4V TGCA 6 cut(s) 188, 210, 259, 297, 321, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 140
HpyF3I CTNAG 2 cut(s) 30, 470
Hsp92II CATG 2 cut(s) 394, 490
Kzo9I GATC 2 cut(s) 129, 366
LmnI GCTCC 1 cut(s) 414
Lsp1109I GCAGC 2 cut(s) 271, 486
LweI GCATC 2 cut(s) 143, 439
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 3 cut(s) 36, 89, 147
MalI GATC 2 cut(s) 131, 368
MboI GATC 2 cut(s) 129, 366
MboII GAAGA 3 cut(s) 16, 262, 400
MhlI GDGCHC 2 cut(s) 419, 458
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 3 cut(s) 87, 341, 494
MseI TTAA 2 cut(s) 18, 508
MslI CAYNNNNRTG 1 cut(s) 116
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 3 cut(s) 168, 275, 459
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 3 cut(s) 168, 275, 459
MwoI GCNNNNNNNGC 2 cut(s) 94, 140
NdeI CATATG 1 cut(s) 299
NdeII GATC 2 cut(s) 129, 366
NlaIII CATG 2 cut(s) 394, 490
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 2 cut(s) 261, 476
Ple19I CGATCG 1 cut(s) 369
PshAI GACNNNNGTC 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 166, 273, 457
PspGI CCWGG 3 cut(s) 166, 273, 457
PvuI CGATCG 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 18, 508
SatI GCNGC 2 cut(s) 260, 475
Sau3AI GATC 2 cut(s) 129, 366
ScrFI CCNGG 3 cut(s) 168, 275, 459
SduI GDGCHC 2 cut(s) 419, 458
SetI ASST 6 cut(s) 49, 164, 169, 425, 443, 463
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 2 cut(s) 143, 439
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 1 cut(s) 60
SspMI CTAG 3 cut(s) 36, 89, 147
StyD4I CCNGG 3 cut(s) 166, 273, 457
TaaI ACNGT 2 cut(s) 127, 244
TasI AATT 1 cut(s) 60
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 18, 508
Tru9I TTAA 2 cut(s) 18, 508
TscAI CASTG 1 cut(s) 72
TseI GCWGC 2 cut(s) 259, 474
TspDTI ATGAA 2 cut(s) 17, 271
TspRI CASTG 1 cut(s) 72
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 3 cut(s) 36, 89, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.