Rmu_sc0008453.1_g000010

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008453.1
OG0000404
Physical Location & Seq
Reverse (-)
35087 .. 37567
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008453.1_g000010.1.cds

Sequence Viewer

Length: 615 bp
atggagctagaagatcaccatgaagccgatacaacaagagccatctatgaggcagcagtcgcaggcaccgtatcatctttgaaaaaactgatccagaaggaccctctcatcctcaacaaagtttcactcactcacttcagcaaaactcctctgcacatctcatctttgctcggtcacattgatttcaccaatgctcttcttacacataactcgagacttgccagggtaagggaatccttgagacgcctgccgctcctcttggcatccgtcgagggccataaggacaccgtcgaagctctactgaaagtctaccccgacgcttgcttgtttcaggatcaggatggtaggattcctcttcactatgccgcaatgagaggacatgctgaggtcttagctgagctgatgctagcaaaaccgaaatcggtttcagatgcagcactgcggaaaaatatgccaggaaccgaaagcctggagaaaccggcccgttctgtcacggtccgggttgaggccggtccctgtgtttgtcatatgcaagcccggcccgaacttaactctgccggtccagtcccggtctctgtaaatgtggtgccggtctgggaccgtgcccagccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

204

Amino Acids

22.38

Weight (kDa)

7.82

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 65, 586
AccBSI CCGCTC 1 cut(s) 253
AccI GTMKAC 1 cut(s) 309
AciI CCGC 3 cut(s) 251, 366, 442
AclWI GGATC 2 cut(s) 85, 342
AcuI CTGAAG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 228, 505
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 3 cut(s) 221, 454, 468
AluBI AGCT 4 cut(s) 7, 296, 395, 400
AluI AGCT 4 cut(s) 7, 296, 395, 400
Alw26I GTCTC 3 cut(s) 208, 235, 577
AlwI GGATC 2 cut(s) 85, 342
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 4 cut(s) 274, 480, 507, 539
ApeKI GCWGC 2 cut(s) 53, 434
AspS9I GGNCC 8 cut(s) 100, 274, 481, 496, 512, 540, 560, 598
AsuC2I CCSGG 3 cut(s) 500, 538, 569
AsuHPI GGTGA 2 cut(s) 8, 178
AsuNHI GCTAGC 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 5 cut(s) 100, 496, 512, 560, 598
BaeGI GKGCMC 1 cut(s) 607
BanI GGYRCC 2 cut(s) 65, 586
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 65, 446
BccI CCATC 2 cut(s) 50, 335
BciT130I CCWGG 3 cut(s) 223, 456, 470
BcnI CCSGG 3 cut(s) 500, 538, 569
BcoDI GTCTC 3 cut(s) 208, 235, 577
BfaI CTAG 2 cut(s) 8, 407
BisI GCNGC 4 cut(s) 54, 251, 366, 435
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 4 cut(s) 55, 252, 367, 436
Bme1390I CCNGG 6 cut(s) 223, 456, 470, 500, 538, 569
Bme18I GGWCC 5 cut(s) 100, 496, 512, 560, 598
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 8 cut(s) 100, 274, 481, 496, 512, 540, 560, 598
BmiI GGNNCC 6 cut(s) 67, 102, 460, 514, 588, 599
BmrFI CCNGG 6 cut(s) 223, 456, 470, 500, 538, 569
BmsI GCATC 3 cut(s) 272, 393, 421
BmtI GCTAGC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 384
Bpu1102I GCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 259
BpuMI CCSGG 3 cut(s) 500, 538, 569
BsaHI GRCGYC 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 505
Bse118I RCCGGY 4 cut(s) 478, 509, 557, 589
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 3 cut(s) 223, 456, 470
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 3 cut(s) 108, 263, 346
BseLI CCNNNNNNNGG 2 cut(s) 228, 505
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 375, 387
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 2 cut(s) 138, 245
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 2 cut(s) 65, 446
BseYI CCCAGC 1 cut(s) 606
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 4 cut(s) 276, 482, 509, 541
BshNI GGYRCC 2 cut(s) 65, 586
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 7 cut(s) 479, 499, 510, 538, 558, 569, 590
BslFI GGGAC 3 cut(s) 498, 551, 611
BslI CCNNNNNNNGG 2 cut(s) 228, 505
BsmAI GTCTC 3 cut(s) 208, 235, 577
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 3 cut(s) 498, 551, 611
BsnI GGCC 4 cut(s) 276, 482, 509, 541
Bso31I GGTCTC 1 cut(s) 577
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 3 cut(s) 13, 90, 334
Bsp1720I GCTNAGC 1 cut(s) 396
BspACI CCGC 3 cut(s) 251, 366, 442
BspANI GGCC 4 cut(s) 276, 482, 509, 541
BspCNI CTCAG 2 cut(s) 376, 388
BspLI GGNNCC 6 cut(s) 67, 102, 460, 514, 588, 599
BspOI GCTAGC 1 cut(s) 410
BspPI GGATC 2 cut(s) 85, 342
BspQI GCTCTTC 1 cut(s) 201
BspT107I GGYRCC 2 cut(s) 65, 586
BspTNI GGTCTC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 4 cut(s) 478, 509, 557, 589
BsrI ACTGG 1 cut(s) 563
BssAI RCCGGY 4 cut(s) 478, 509, 557, 589
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 13, 90, 334
BssNI GRCGYC 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 223, 456, 470
Bst4CI ACNGT 4 cut(s) 70, 289, 496, 602
Bst6I CTCTTC 2 cut(s) 201, 360
BstACI GRCGYC 1 cut(s) 244
BstC8I GCNNGC 5 cut(s) 64, 248, 322, 408, 534
BstDEI CTNAG 3 cut(s) 384, 391, 396
BstF5I GGATG 3 cut(s) 108, 263, 346
BstKTI GATC 3 cut(s) 16, 93, 337
BstMAI GTCTC 3 cut(s) 208, 235, 577
BstMBI GATC 3 cut(s) 13, 90, 334
BstMWI GCNNNNNNNGC 2 cut(s) 59, 538
BstNI CCWGG 3 cut(s) 223, 456, 470
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 6 cut(s) 221, 454, 468, 498, 536, 567
BstSLI GKGCMC 1 cut(s) 607
BstV1I GCAGC 2 cut(s) 65, 446
BsuRI GGCC 4 cut(s) 276, 482, 509, 541
BtsCI GGATG 3 cut(s) 108, 263, 346
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 5 cut(s) 64, 248, 322, 408, 534
Cfr10I RCCGGY 4 cut(s) 478, 509, 557, 589
Cfr13I GGNCC 8 cut(s) 100, 274, 481, 496, 512, 540, 560, 598
CpoI CGGWCCG 1 cut(s) 496
CseI GACGC 2 cut(s) 252, 326
CspI CGGWCCG 1 cut(s) 496
CviAII CATG 2 cut(s) 20, 380
DdeI CTNAG 3 cut(s) 384, 391, 396
DpnI GATC 3 cut(s) 15, 92, 336
DpnII GATC 3 cut(s) 13, 90, 334
Eam1104I CTCTTC 2 cut(s) 201, 360
EarI CTCTTC 2 cut(s) 201, 360
Eco31I GGTCTC 1 cut(s) 577
Eco47I GGWCC 5 cut(s) 100, 496, 512, 560, 598
Eco57I CTGAAG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 3 cut(s) 221, 454, 468
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 2 cut(s) 23, 383
FaiI YATR 9 cut(s) 21, 48, 207, 279, 363, 381, 452, 528, 530
FaqI GGGAC 3 cut(s) 498, 551, 611
FatI CATG 2 cut(s) 19, 379
FauNDI CATATG 1 cut(s) 528
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 54, 251, 366, 435
FokI GGATG 3 cut(s) 95, 250, 353
Fsp4HI GCNGC 4 cut(s) 54, 251, 366, 435
FspBI CTAG 2 cut(s) 8, 407
GluI GCNGC 4 cut(s) 54, 251, 366, 435
GsaI CCCAGC 1 cut(s) 610
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 4 cut(s) 276, 482, 509, 541
HapII CCGG 7 cut(s) 479, 499, 510, 538, 558, 569, 590
HgaI GACGC 2 cut(s) 252, 326
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 2 cut(s) 23, 383
HinfI GANTC 2 cut(s) 233, 349
HpaII CCGG 7 cut(s) 479, 499, 510, 538, 558, 569, 590
HphI GGTGA 2 cut(s) 8, 178
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 4 cut(s) 94, 213, 332, 338
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 3 cut(s) 272, 293, 320
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 4 cut(s) 70, 289, 496, 602
HpyCH4V TGCA 3 cut(s) 154, 434, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 538
HpyF3I CTNAG 3 cut(s) 384, 391, 396
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 2 cut(s) 23, 383
Kzo9I GATC 3 cut(s) 13, 90, 334
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 2 cut(s) 4, 258
Lsp1109I GCAGC 2 cut(s) 65, 446
LweI GCATC 3 cut(s) 272, 393, 421
MaeI CTAG 2 cut(s) 8, 407
MaeIII GTNAC 2 cut(s) 173, 490
MalI GATC 3 cut(s) 15, 92, 336
MbiI CCGCTC 1 cut(s) 253
MboI GATC 3 cut(s) 13, 90, 334
MboII GAAGA 3 cut(s) 23, 188, 347
MhlI GDGCHC 1 cut(s) 607
MseI TTAA 1 cut(s) 549
MspI CCGG 7 cut(s) 479, 499, 510, 538, 558, 569, 590
MspR9I CCNGG 6 cut(s) 223, 456, 470, 500, 538, 569
MvaI CCWGG 3 cut(s) 223, 456, 470
MwoI GCNNNNNNNGC 2 cut(s) 59, 538
NciI CCSGG 3 cut(s) 500, 538, 569
NdeI CATATG 1 cut(s) 528
NdeII GATC 3 cut(s) 13, 90, 334
NheI GCTAGC 1 cut(s) 406
NlaIII CATG 2 cut(s) 23, 383
NlaIV GGNNCC 6 cut(s) 67, 102, 460, 514, 588, 599
NmuCI GTSAC 2 cut(s) 173, 490
NspI RCATGY 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 2 cut(s) 233, 349
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 4 cut(s) 55, 252, 367, 436
PpuMI RGGWCCY 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 3 cut(s) 221, 454, 468
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 3 cut(s) 221, 454, 468
PspN4I GGNNCC 6 cut(s) 67, 102, 460, 514, 588, 599
PspPI GGNCC 8 cut(s) 100, 274, 481, 496, 512, 540, 560, 598
PspPPI RGGWCCY 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 287
Rsr2I CGGWCCG 1 cut(s) 496
RsrII CGGWCCG 1 cut(s) 496
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 4 cut(s) 54, 251, 366, 435
Sau3AI GATC 3 cut(s) 13, 90, 334
Sau96I GGNCC 8 cut(s) 100, 274, 481, 496, 512, 540, 560, 598
ScrFI CCNGG 6 cut(s) 223, 456, 470, 500, 538, 569
SduI GDGCHC 1 cut(s) 607
SetI ASST 5 cut(s) 9, 298, 390, 397, 402
SfaNI GCATC 3 cut(s) 272, 393, 421
Sfr274I CTCGAG 1 cut(s) 211
SinI GGWCC 5 cut(s) 100, 496, 512, 560, 598
SlaI CTCGAG 1 cut(s) 211
SmlI CTYRAG 2 cut(s) 211, 238
SmoI CTYRAG 2 cut(s) 211, 238
SsiI CCGC 3 cut(s) 251, 366, 442
SspMI CTAG 2 cut(s) 8, 407
StyD4I CCNGG 6 cut(s) 221, 454, 468, 498, 536, 567
TaaI ACNGT 4 cut(s) 70, 289, 496, 602
TaqI TCGA 3 cut(s) 212, 270, 291
TaqII GACCGA 1 cut(s) 161
TauI GCSGC 2 cut(s) 253, 368
TfiI GAWTC 2 cut(s) 233, 349
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 1 cut(s) 444
TseFI GTSAC 2 cut(s) 173, 490
TseI GCWGC 2 cut(s) 53, 434
Tsp45I GTSAC 2 cut(s) 173, 490
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 444
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 5 cut(s) 100, 496, 512, 560, 598
XceI RCATGY 1 cut(s) 383
XhoI CTCGAG 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 2 cut(s) 8, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.