AT4G13266

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000404
Physical Location & Seq
Reverse (-)
7705761 .. 7706893
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13266.1

Sequence Viewer

Length: 666 bp
ATGGAGGTGAACACTCGACTGACTCGAGAAGAACATCCATTCCAAGATTCATCTGCATGGTTTCTACGGTACCTTGACCACCAAGGCGACTGGCTTGAAAAAACTAGGGGAAACCTGGTCGTTGCTGCAACAGTCATAGCTGCAATGAGCTTTGGGGTAATGGTGAACCCTCCAGGCGGTGTTTGGCAGAGTGAAGATTGTTCCTCCAAAGGCCAAACTACTTTTCAAACCAGAACTTGTGAGGGGAAGCTTGGGACTTCGATACTAGAGCACAATCCTTCAAAGCGTATCTTCTATCTTGGCATGGTCATTAGCAATTTGGTATCGTTTTCCGCCTCAATGGGTATCATTTTCCTCGTCATCATTGGCTTCCGATTCAGGAACCGGTTAATAATGACGATCATGGTCATGTTTATGGTGGTGGCGGTTCTATGTATATCGGCAGCCTTCTTCTTTGCTGCGGGGTTGGTTCAACACGAGGATGATTTCATCGAGAAGATTCTTCAAATTTATTTGGGATTTTGGGTTTTGCTTCCTGTTTTAGTAATCCTGATCCAATTAGTGCGGTTTTTATGGTGGGTTATTAGGTTCATATGTTGTGGTTGTGGACGTCGACCACGGTCTACTCCACGGTTGCTGCCTTTGGCTCTGCCACCTGTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

221

Amino Acids

25.14

Weight (kDa)

9.24

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 30 - 154 3.1e-13 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 613
Acc65I GGTACC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 69
AccI GTMKAC 2 cut(s) 613, 623
AciI CCGC 5 cut(s) 177, 333, 425, 461, 565
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 1 cut(s) 507
AcyI GRCGYC 1 cut(s) 610
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 176
AgeI ACCGGT 1 cut(s) 384
AgsI TTSAA 5 cut(s) 98, 227, 282, 473, 506
AjnI CCWGG 2 cut(s) 114, 172
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 3 cut(s) 140, 150, 250
AluI AGCT 3 cut(s) 140, 150, 250
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 5 cut(s) 125, 140, 443, 458, 637
ApoI RAATTY 1 cut(s) 507
AsiGI ACCGGT 1 cut(s) 384
Asp718I GGTACC 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 19, 175
AvaI CYCGRG 1 cut(s) 24
BanI GGYRCC 1 cut(s) 69
BauI CACGAG 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 5 cut(s) 112, 127, 445, 455, 624
BciT130I CCWGG 2 cut(s) 116, 174
BfaI CTAG 2 cut(s) 105, 266
BisI GCNGC 5 cut(s) 126, 141, 444, 459, 638
BlsI GCNGC 5 cut(s) 127, 142, 445, 460, 639
Bme1390I CCNGG 2 cut(s) 116, 174
BmeT110I CYCGRG 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 71, 383
BmrFI CCNGG 2 cut(s) 116, 174
BoxI GACNNNNGTC 1 cut(s) 619
BpmI CTGGAG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 610
BsaJI CCNNGG 3 cut(s) 82, 617, 629
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 116, 174
BseDI CCNNGG 3 cut(s) 82, 617, 629
BseGI GGATG 2 cut(s) 34, 487
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 5 cut(s) 112, 127, 445, 455, 624
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 69
BshTI ACCGGT 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 385
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 399, 552
BspACI CCGC 5 cut(s) 177, 333, 425, 461, 565
BspANI GGCC 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 71, 383
BspPI GGATC 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 3 cut(s) 82, 617, 629
BssMI GATC 2 cut(s) 399, 552
BssNI GRCGYC 1 cut(s) 610
BssSI CACGAG 1 cut(s) 476
BssT1I CCWWGG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 476
Bst2UI CCWGG 2 cut(s) 116, 174
Bst4CI ACNGT 4 cut(s) 69, 133, 621, 633
BstACI GRCGYC 1 cut(s) 610
BstDSI CCRYGG 2 cut(s) 617, 629
BstF5I GGATG 2 cut(s) 34, 487
BstKTI GATC 2 cut(s) 402, 555
BstMBI GATC 2 cut(s) 399, 552
BstNI CCWGG 2 cut(s) 116, 174
BstPAI GACNNNNGTC 1 cut(s) 619
BstSCI CCNGG 2 cut(s) 114, 172
BstV1I GCAGC 5 cut(s) 112, 127, 445, 455, 624
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 2 cut(s) 617, 629
BtsCI GGATG 2 cut(s) 34, 487
Cfr10I RCCGGY 1 cut(s) 384
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 1 cut(s) 70
CspAI ACCGGT 1 cut(s) 384
CviAII CATG 4 cut(s) 57, 304, 403, 409
CviJI RGCY 8 cut(s) 94, 140, 150, 213, 250, 369, 446, 647
CviKI_1 RGCY 8 cut(s) 94, 140, 150, 213, 250, 369, 446, 647
CviQI GTAC 1 cut(s) 70
DpnI GATC 2 cut(s) 401, 554
DpnII GATC 2 cut(s) 399, 552
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 114, 172
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 4 cut(s) 60, 307, 406, 412
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 268
FatI CATG 4 cut(s) 56, 303, 402, 408
FauI CCCGC 1 cut(s) 454
FauNDI CATATG 1 cut(s) 593
FblI GTMKAC 2 cut(s) 613, 623
Fnu4HI GCNGC 5 cut(s) 126, 141, 444, 459, 638
FokI GGATG 2 cut(s) 21, 494
Fsp4HI GCNGC 5 cut(s) 126, 141, 444, 459, 638
FspBI CTAG 2 cut(s) 105, 266
GluI GCNGC 5 cut(s) 126, 141, 444, 459, 638
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 385
Hin1I GRCGYC 1 cut(s) 610
Hin1II CATG 4 cut(s) 60, 307, 406, 412
HincII GTYRAC 1 cut(s) 614
HindII GTYRAC 1 cut(s) 614
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 4 cut(s) 22, 47, 375, 499
HpaII CCGG 1 cut(s) 385
HphI GGTGA 2 cut(s) 19, 175
Hpy166II GTNNAC 5 cut(s) 10, 166, 608, 614, 624
Hpy188I TCNGA 1 cut(s) 374
Hpy188III TCNNGA 4 cut(s) 26, 379, 493, 550
Hpy8I GTNNAC 5 cut(s) 10, 166, 608, 614, 624
Hpy99I CGWCG 1 cut(s) 615
HpyAV CCTTC 2 cut(s) 288, 457
HpyCH4III ACNGT 4 cut(s) 69, 133, 621, 633
HpyCH4IV ACGT 1 cut(s) 610
HpyCH4V TGCA 3 cut(s) 56, 128, 143
HpySE526I ACGT 1 cut(s) 610
Hsp92I GRCGYC 1 cut(s) 610
Hsp92II CATG 4 cut(s) 60, 307, 406, 412
KpnI GGTACC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 399, 552
Lsp1109I GCAGC 5 cut(s) 112, 127, 445, 455, 624
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 2 cut(s) 105, 266
MaeII ACGT 1 cut(s) 610
MalI GATC 2 cut(s) 401, 554
MboI GATC 2 cut(s) 399, 552
MboII GAAGA 6 cut(s) 41, 206, 283, 442, 494, 508
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 3 cut(s) 316, 507, 557
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 6 cut(s) 180, 214, 235, 346, 365, 472
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 4 cut(s) 55, 407, 413, 480
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 2 cut(s) 116, 174
MvaI CCWGG 2 cut(s) 116, 174
NdeI CATATG 1 cut(s) 593
NdeII GATC 2 cut(s) 399, 552
NlaIII CATG 4 cut(s) 60, 307, 406, 412
NlaIV GGNNCC 2 cut(s) 71, 383
PaeR7I CTCGAG 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PfeI GAWTC 3 cut(s) 47, 375, 499
PinAI ACCGGT 1 cut(s) 384
PkrI GCNGC 5 cut(s) 127, 142, 445, 460, 639
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PshAI GACNNNNGTC 1 cut(s) 619
Psp6I CCWGG 2 cut(s) 114, 172
PspGI CCWGG 2 cut(s) 114, 172
PspN4I GGNNCC 2 cut(s) 71, 383
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 4 cut(s) 55, 407, 413, 480
SalI GTCGAC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 5 cut(s) 126, 141, 444, 459, 638
Sau3AI GATC 2 cut(s) 399, 552
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 116, 174
SduI GDGCHC 1 cut(s) 273
SetI ASST 9 cut(s) 9, 75, 117, 142, 152, 252, 590, 613, 658
SexAI ACCWGGT 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 24
SmiMI CAYNNNNRTG 4 cut(s) 55, 407, 413, 480
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 3 cut(s) 316, 507, 557
SsiI CCGC 5 cut(s) 177, 333, 425, 461, 565
SspMI CTAG 2 cut(s) 105, 266
StyD4I CCNGG 2 cut(s) 114, 172
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 4 cut(s) 69, 133, 621, 633
TaiI ACGT 1 cut(s) 613
TaqI TCGA 5 cut(s) 16, 25, 260, 492, 613
TasI AATT 3 cut(s) 316, 507, 557
TfiI GAWTC 3 cut(s) 47, 375, 499
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseI GCWGC 5 cut(s) 125, 140, 443, 458, 637
TspDTI ATGAA 3 cut(s) 39, 478, 580
TspGWI ACGGA 1 cut(s) 650
XapI RAATTY 1 cut(s) 507
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XhoI CTCGAG 1 cut(s) 24
XmiI GTMKAC 2 cut(s) 613, 623
XspI CTAG 2 cut(s) 105, 266
ZraI GACGTC 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.