Prupe.2G107700_v2.0.a1

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000404
Physical Location & Seq
Reverse (-)
16530412 .. 16534114
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G107700.1

Sequence Viewer

Length: 978 bp
ATGAGCAAATTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGATATCAAGAGACTTGGTGAAGATGAAGTGAATGAGGCAGCAGTACTGACCAATGGTGAGTTCCGCTACTCAAATGATGGCTCTGATGCTCGTATGACTATCCTGCCGTCAGCTTTGATGGGAGGGCAAATTCAGCGCTCAGGAATAATCAGTGTATCAGAAATTAATAATGAACATGATCACGTCCCTCCTCCTCCTCCTCCTCCAGCTGAACCATCACCAAATCCAAGTGCAGAGGGGTGGAGGAAGAAATTGATGGAACCATCACCAAATCCAAGTGTAGAGGGGTGGAGGAAGAAATTCATGGAATGCGTGAAATATCCCAACAAATGGTTGGAAGAGGATCGTGGCCTTCTGATGGTTGTGGCAACCATGATCTCAACCATGACTTTCCAAGCTGTGGCTAACCCACCAGGTGGTGTTTGGCAAGAAAATAACACGAACACTTCCATTCTCCTTAAAGATGGATCCAACTACACAGTTTGCAGCGAAGAATATTTGTGTGTAGCTGGAACTGCAGTGTTAGGCCACGTCTTTCCAACTGAGTTCCTCCGCTTCATAAAGTTCAACACCATCTCGTTCCTTGCTTCTCTGAGCGTCATCCTGTTGCTAGTTAGCGGCTGTCCTCTCCGTAATCGGATATGTATGTGGCTCTTGTCAATGGCCTTGTGCGTCACCCTCACATTCATGGCGCTTACTTACCTACAGGTTCTGTTGTTGGTGGTGGTCCCTTTCGGCGACCTTAACAAATCATCTGATAAAATGTACAAAATATGCTTTGAGCTTTGGATTGGGTTGCTGGTGATGGTCAGTGTGATGATCACTATTCGCTTTCTGATCTGGGTGGTGAAGAAGTCGCGGCCCGCCTACTCAGGTCTCCAGAAAATCATCAGTAATCGCTCCTTTTGTCGTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

326

Amino Acids

36.72

Weight (kDa)

8.07

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 387, 457, 473
AccII CGCG 1 cut(s) 916
AciI CCGC 5 cut(s) 121, 610, 675, 916, 921
AclWI GGATC 3 cut(s) 408, 519, 532
AcsI RAATTY 2 cut(s) 186, 356
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 2 cut(s) 102, 824
AfeI AGCGCT 1 cut(s) 194
AfiI CCNNNNNNNGG 4 cut(s) 387, 415, 457, 473
AgsI TTSAA 1 cut(s) 625
AjiI CACGTC 2 cut(s) 241, 589
AjnI CCWGG 1 cut(s) 469
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 5 cut(s) 170, 266, 455, 566, 841
AluI AGCT 5 cut(s) 170, 266, 455, 566, 841
Alw26I GTCTC 2 cut(s) 61, 938
AlwI GGATC 3 cut(s) 408, 519, 532
AlwNI CAGNNNCTG 1 cut(s) 769
Aor51HI AGCGCT 1 cut(s) 194
AoxI GGCC 4 cut(s) 406, 583, 720, 917
ApeKI GCWGC 2 cut(s) 95, 543
ApoI RAATTY 2 cut(s) 186, 356
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 356
AspLEI GCGC 2 cut(s) 195, 751
AspS9I GGNCC 2 cut(s) 784, 918
AsuHPI GGTGA 7 cut(s) 86, 125, 267, 315, 724, 871, 916
AvaII GGWCC 1 cut(s) 784
BamHI GGATCC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 107, 555
BccI CCATC 9 cut(s) 128, 169, 280, 307, 328, 409, 515, 638, 856
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 2 cut(s) 235, 876
BcoDI GTCTC 2 cut(s) 61, 938
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 2 cut(s) 573, 761
BfoI RGCGCY 2 cut(s) 196, 752
BisI GCNGC 4 cut(s) 96, 544, 676, 917
BlsI GCNGC 4 cut(s) 97, 545, 677, 918
BmcAI AGTACT 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 471
Bme18I GGWCC 1 cut(s) 784
BmgBI CACGTC 2 cut(s) 241, 589
BmgT120I GGNCC 2 cut(s) 784, 918
BmiI GGNNCC 3 cut(s) 318, 526, 786
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 133
BpmI CTGGAG 2 cut(s) 246, 920
Bpu10I CCTNAGC 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 938
Bsc4I CCNNNNNNNGG 4 cut(s) 387, 415, 457, 473
BseBI CCWGG 1 cut(s) 471
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 4 cut(s) 387, 415, 457, 473
BseMII CTCAG 4 cut(s) 210, 591, 641, 942
BseRI GAGGAG 5 cut(s) 237, 240, 243, 246, 249
BseXI GCAGC 2 cut(s) 107, 555
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 916
BshFI GGCC 4 cut(s) 408, 585, 722, 919
BslFI GGGAC 2 cut(s) 227, 770
BslI CCNNNNNNNGG 4 cut(s) 387, 415, 457, 473
BsmAI GTCTC 2 cut(s) 61, 938
BsmFI GGGAC 2 cut(s) 227, 770
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 4 cut(s) 408, 585, 722, 919
Bso31I GGTCTC 1 cut(s) 938
Bsp1407I TGTACA 1 cut(s) 822
Bsp143I GATC 6 cut(s) 235, 400, 432, 524, 876, 894
BspACI CCGC 5 cut(s) 121, 610, 675, 916, 921
BspANI GGCC 4 cut(s) 408, 585, 722, 919
BspCNI CTCAG 4 cut(s) 209, 592, 642, 941
BspFNI CGCG 1 cut(s) 916
BspLI GGNNCC 3 cut(s) 318, 526, 786
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 3 cut(s) 408, 519, 532
BspTNI GGTCTC 1 cut(s) 938
BsrGI TGTACA 1 cut(s) 822
BssMI GATC 6 cut(s) 235, 400, 432, 524, 876, 894
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 822
BstC8I GCNNGC 1 cut(s) 921
BstDEI CTNAG 4 cut(s) 196, 600, 650, 928
BstF5I GGATG 1 cut(s) 657
BstFNI CGCG 1 cut(s) 916
BstH2I RGCGCY 2 cut(s) 196, 752
BstHHI GCGC 2 cut(s) 195, 751
BstKTI GATC 6 cut(s) 238, 403, 435, 527, 879, 897
BstMAI GTCTC 2 cut(s) 61, 938
BstMBI GATC 6 cut(s) 235, 400, 432, 524, 876, 894
BstMWI GCNNNNNNNGC 2 cut(s) 190, 572
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 2 cut(s) 573, 761
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 2 cut(s) 107, 555
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 4 cut(s) 408, 585, 722, 919
BtrI CACGTC 2 cut(s) 241, 589
BtsCI GGATG 1 cut(s) 657
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 3 cut(s) 214, 582, 874
Cac8I GCNNGC 1 cut(s) 921
CaiI CAGNNNCTG 1 cut(s) 769
CfoI GCGC 2 cut(s) 195, 751
Cfr13I GGNCC 2 cut(s) 784, 918
CseI GACGC 2 cut(s) 643, 718
CsiI ACCWGGT 1 cut(s) 469
Csp6I GTAC 2 cut(s) 101, 823
CviAII CATG 6 cut(s) 55, 233, 361, 430, 442, 745
CviQI GTAC 2 cut(s) 101, 823
DdeI CTNAG 4 cut(s) 196, 600, 650, 928
DpnI GATC 6 cut(s) 237, 402, 434, 526, 878, 896
DpnII GATC 6 cut(s) 235, 400, 432, 524, 876, 894
DraIII CACNNNGTG 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 938
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 784
Eco47III AGCGCT 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 469
EcoRV GATATC 1 cut(s) 61
FaeI CATG 6 cut(s) 58, 236, 364, 433, 445, 748
FaqI GGGAC 2 cut(s) 227, 770
FatI CATG 6 cut(s) 54, 232, 360, 429, 441, 744
FauI CCCGC 1 cut(s) 928
FbaI TGATCA 2 cut(s) 235, 876
Fnu4HI GCNGC 4 cut(s) 96, 544, 676, 917
FokI GGATG 1 cut(s) 644
Fsp4HI GCNGC 4 cut(s) 96, 544, 676, 917
FspBI CTAG 1 cut(s) 668
GlaI GCGC 2 cut(s) 194, 750
GluI GCNGC 4 cut(s) 96, 544, 676, 917
GsuI CTGGAG 2 cut(s) 246, 920
HaeII RGCGCY 2 cut(s) 196, 752
HaeIII GGCC 4 cut(s) 408, 585, 722, 919
HgaI GACGC 2 cut(s) 643, 718
HhaI GCGC 2 cut(s) 195, 751
Hin1II CATG 6 cut(s) 58, 236, 364, 433, 445, 748
Hin6I GCGC 2 cut(s) 193, 749
HinP1I GCGC 2 cut(s) 193, 749
HphI GGTGA 7 cut(s) 86, 125, 267, 315, 724, 871, 916
Hpy188I TCNGA 7 cut(s) 142, 217, 414, 651, 696, 814, 894
Hpy188III TCNNGA 3 cut(s) 64, 198, 937
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 2 cut(s) 240, 588
HpyCH4V TGCA 3 cut(s) 290, 543, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 572
HpyF3I CTNAG 4 cut(s) 196, 600, 650, 928
HpySE526I ACGT 2 cut(s) 240, 588
Hsp92II CATG 6 cut(s) 58, 236, 364, 433, 445, 748
HspAI GCGC 2 cut(s) 193, 749
Ksp22I TGATCA 2 cut(s) 235, 876
Kzo9I GATC 6 cut(s) 235, 400, 432, 524, 876, 894
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 2 cut(s) 107, 555
LweI GCATC 1 cut(s) 133
MabI ACCWGGT 1 cut(s) 469
MaeI CTAG 1 cut(s) 668
MaeII ACGT 2 cut(s) 240, 588
MaeIII GTNAC 1 cut(s) 730
MalI GATC 6 cut(s) 237, 402, 434, 526, 878, 896
MboI GATC 6 cut(s) 235, 400, 432, 524, 876, 894
MboII GAAGA 6 cut(s) 89, 316, 364, 407, 560, 919
MflI RGATCY 1 cut(s) 524
MluCI AATT 5 cut(s) 8, 186, 219, 308, 356
MmeI TCCRAC 3 cut(s) 372, 552, 620
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 4 cut(s) 222, 516, 801, 976
MslI CAYNNNNRTG 1 cut(s) 743
MspA1I CMGCKG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 1 cut(s) 471
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 2 cut(s) 190, 572
NdeII GATC 6 cut(s) 235, 400, 432, 524, 876, 894
NlaIII CATG 6 cut(s) 58, 236, 364, 433, 445, 748
NlaIV GGNNCC 3 cut(s) 318, 526, 786
NmuCI GTSAC 1 cut(s) 730
PctI GAATGC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 356
PflMI CCANNNNNTGG 3 cut(s) 387, 457, 473
PkrI GCNGC 4 cut(s) 97, 545, 677, 918
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 318, 526, 786
PspPI GGNCC 2 cut(s) 784, 918
PstI CTGCAG 1 cut(s) 577
PstNI CAGNNNCTG 1 cut(s) 769
PsuI RGATCY 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 102, 824
RsaNI GTAC 2 cut(s) 101, 823
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 4 cut(s) 222, 516, 801, 976
SatI GCNGC 4 cut(s) 96, 544, 676, 917
Sau3AI GATC 6 cut(s) 235, 400, 432, 524, 876, 894
Sau96I GGNCC 2 cut(s) 784, 918
ScaI AGTACT 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 471
SexAI ACCWGGT 1 cut(s) 469
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 2 cut(s) 573, 761
SinI GGWCC 1 cut(s) 784
SmiMI CAYNNNNRTG 1 cut(s) 743
Sse9I AATT 5 cut(s) 8, 186, 219, 308, 356
SsiI CCGC 5 cut(s) 121, 610, 675, 916, 921
SspI AATATT 1 cut(s) 554
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 2 cut(s) 243, 591
TasI AATT 5 cut(s) 8, 186, 219, 308, 356
TatI WGTACW 2 cut(s) 100, 822
TauI GCSGC 2 cut(s) 678, 919
Tru1I TTAA 4 cut(s) 222, 516, 801, 976
Tru9I TTAA 4 cut(s) 222, 516, 801, 976
TscAI CASTG 3 cut(s) 214, 582, 874
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 2 cut(s) 95, 543
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 5 cut(s) 96, 243, 349, 604, 733
TspGWI ACGGA 1 cut(s) 677
TspRI CASTG 3 cut(s) 214, 582, 874
Van91I CCANNNNNTGG 3 cut(s) 387, 457, 473
VpaK11BI GGWCC 1 cut(s) 784
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 2 cut(s) 186, 356
XcmI CCANNNNNNNNNTGG 2 cut(s) 388, 477
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 1 cut(s) 668
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.