Rh1CG166000

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
36497164 .. 36514445
17282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG166000.1

Sequence Viewer

Length: 1056 bp
ATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGACAATGGGATTGGTTCGAATGAGGTTACTTATGGAGTTATGATTGAAGCTTATTGTAAGGAAAAGAGGTTGGGTGAAGCGGTTAATTTGCTTAATGATATGGCGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGACCATAACATACCTGGTTTCACTGCCTGCTATCAGAAAGAATGTTGTAAATAATATCGTCTTGGATACCTTAGAGTACGGTCCCATAGACTTTAGAAGCATAGCAATTCAACAGATTTTGATGGACGCATGTATCGATAAAAACAAAAAAGATGAGTATGAGCAACAAGTATTCTCAACAACAGCACCTGTCTCGCCACCATCAGAATCCAGTATAGTCGGAAAGAGAACAATCAAAACATGGTTGTGCATGAAATTAATGCAATGCTTGAAGTACAACAAGGGTGATCGTTGGTTTGAAGAAATACGCGGCATGTTGATGGTTGTCGCTACCATGATATCAACCATGACTTTCCAAGTCAACCCACCAGGTGGTGTTTGGCAAGATAATGTCAGATCATTTAGCATTGAAGAAAGCAATTATTGTTCAACAGAAGACCCTTGCTATCCTGGAGCTGCAGTGTTGGGAGATGTGTGGGAACCCGACATGCGGGAATTTATTAAGTACAACACCATCTCTTTTGTTGCTTCTCTCAGTGTTACCGTGTTTCTTATCAGCGGCTTTCCTCTGACAAATCGGATATGTATATGGATCTTATCAATGGCTATGTGCATCACTATCACTTTCACTGCTCTTACTTACCTAACTGGTGTTGACTTGGTGATGCCATTTGCTGTTGCGGATGATGTTGACAGTAAGTACAGACCATTAGGAGTTCAGGTTTGGATTGGATTGCTTGCTATGGTTGGTTTATTCCATACTTTTCGTTTTCTCACTTGGCTTGTGCAGAAGGTGAACTCCAAGTTCAGAGATAAGAGCAGGGCAAATGGTATGTCACTATGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

351

Amino Acids

39.57

Weight (kDa)

5.49

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 1 - 41 3.2e-11 PPR repeat family
PPR_1 PF12854 24 - 55 1.3e-07 PPR repeat
PPR_2 PF13041 28 - 64 1.7e-07 PPR repeat family
PPR PF01535 30 - 58 2.5e-06 PPR repeat
PGG PF13962 166 - 287 1.2e-13 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 578
AccII CGCG 1 cut(s) 516
AciI CCGC 6 cut(s) 143, 167, 516, 697, 765, 887
AclWI GGATC 1 cut(s) 806
AcsI RAATTY 1 cut(s) 701
AdeI CACNNNGTG 1 cut(s) 578
AfaI GTAC 4 cut(s) 284, 482, 713, 908
AfiI CCNNNNNNNGG 2 cut(s) 578, 696
AgsI TTSAA 6 cut(s) 110, 317, 478, 506, 617, 636
AjnI CCWGG 3 cut(s) 219, 574, 655
AluBI AGCT 4 cut(s) 28, 113, 189, 662
AluI AGCT 4 cut(s) 28, 113, 189, 662
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 662
ApoI RAATTY 1 cut(s) 701
ArsI GACNNNNNNTTYG 1 cut(s) 1025
AseI ATTAAT 1 cut(s) 464
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 4 cut(s) 149, 503, 880, 1012
AsuII TTCGAA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BanII GRGCYC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 649
BccI CCATC 5 cut(s) 52, 322, 415, 520, 728
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BciT130I CCWGG 3 cut(s) 221, 576, 657
BciVI GTATCC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 403
BfmI CTRYAG 1 cut(s) 663
BfoI RGCGCY 1 cut(s) 197
BfuI GTATCC 1 cut(s) 265
BisI GCNGC 3 cut(s) 517, 663, 766
BlsI GCNGC 3 cut(s) 518, 664, 767
Bme1390I CCNGG 3 cut(s) 221, 576, 657
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 289, 687
BmrFI CCNGG 3 cut(s) 221, 576, 657
BmsI GCATC 2 cut(s) 828, 861
BpiI GAAGAC 1 cut(s) 648
BpmI CTGGAG 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 342
BsaXI ACNNNNNCTCC 6 cut(s) 161, 191, 651, 681, 912, 942
Bsc4I CCNNNNNNNGG 2 cut(s) 578, 696
Bse1I ACTGG 2 cut(s) 417, 859
Bse3DI GCAATG 1 cut(s) 476
BseBI CCWGG 3 cut(s) 221, 576, 657
BseCI ATCGAT 1 cut(s) 342
BseGI GGATG 3 cut(s) 10, 58, 895
BseLI CCNNNNNNNGG 2 cut(s) 578, 696
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 754
BseNI ACTGG 2 cut(s) 417, 859
BseXI GCAGC 1 cut(s) 649
BsgI GTGCAG 1 cut(s) 1013
Bsh1236I CGCG 1 cut(s) 516
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 578, 696
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 3 cut(s) 493, 602, 798
BspACI CCGC 6 cut(s) 143, 167, 516, 697, 765, 887
BspCNI CTCAG 1 cut(s) 753
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 1 cut(s) 516
BspLI GGNNCC 2 cut(s) 289, 687
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 1 cut(s) 806
BspT104I TTCGAA 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 476
BsrI ACTGG 2 cut(s) 417, 859
BssMI GATC 3 cut(s) 493, 602, 798
Bst2UI CCWGG 3 cut(s) 221, 576, 657
Bst4CI ACNGT 3 cut(s) 287, 751, 902
Bst6I CTCTTC 1 cut(s) 167
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 234, 945
BstDEI CTNAG 2 cut(s) 277, 740
BstF5I GGATG 3 cut(s) 10, 58, 895
BstFNI CGCG 1 cut(s) 516
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 3 cut(s) 496, 605, 801
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 3 cut(s) 493, 602, 798
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 3 cut(s) 221, 576, 657
BstNSI RCATGY 3 cut(s) 339, 523, 697
BstSCI CCNGG 3 cut(s) 219, 574, 655
BstSFI CTRYAG 1 cut(s) 663
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
Bsu15I ATCGAT 1 cut(s) 342
BsuI GTATCC 1 cut(s) 265
BsuTUI ATCGAT 1 cut(s) 342
BtsCI GGATG 3 cut(s) 10, 58, 895
BtsI GCAGTG 3 cut(s) 227, 672, 834
BtsIMutI CAGTG 4 cut(s) 227, 672, 748, 834
Cac8I GCNNGC 2 cut(s) 234, 945
CaiI CAGNNNCTG 1 cut(s) 395
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 287
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 341
CsiI ACCWGGT 2 cut(s) 219, 574
Csp6I GTAC 4 cut(s) 283, 481, 712, 907
CviAII CATG 7 cut(s) 336, 447, 457, 520, 541, 553, 694
CviJI RGCY 8 cut(s) 28, 38, 113, 189, 662, 768, 812, 988
CviKI_1 RGCY 8 cut(s) 28, 38, 113, 189, 662, 768, 812, 988
CviQI GTAC 4 cut(s) 283, 481, 712, 907
DdeI CTNAG 2 cut(s) 277, 740
DpnI GATC 3 cut(s) 495, 604, 800
DpnII GATC 3 cut(s) 493, 602, 798
DraIII CACNNNGTG 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 189
EcoRII CCWGG 3 cut(s) 219, 574, 655
EcoRV GATATC 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 7 cut(s) 339, 450, 460, 523, 544, 556, 697
FaqI GGGAC 1 cut(s) 273
FatI CATG 7 cut(s) 335, 446, 456, 519, 540, 552, 693
FauI CCCGC 1 cut(s) 690
Fnu4HI GCNGC 3 cut(s) 517, 663, 766
FokI GGATG 3 cut(s) 17, 65, 902
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 3 cut(s) 517, 663, 766
GlaI GCGC 1 cut(s) 195
GluI GCNGC 3 cut(s) 517, 663, 766
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 197
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 196
Hin1II CATG 7 cut(s) 339, 450, 460, 523, 544, 556, 697
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 3 cut(s) 568, 862, 898
HindII GTYRAC 3 cut(s) 568, 862, 898
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 1 cut(s) 413
HphI GGTGA 4 cut(s) 149, 503, 880, 1012
Hpy166II GTNNAC 4 cut(s) 568, 862, 898, 1003
Hpy188I TCNGA 7 cut(s) 242, 412, 428, 602, 777, 786, 1016
Hpy8I GTNNAC 4 cut(s) 568, 862, 898, 1003
HpyAV CCTTC 1 cut(s) 991
HpyCH4III ACNGT 3 cut(s) 287, 751, 902
HpyCH4V TGCA 5 cut(s) 456, 469, 665, 819, 994
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 277, 740
Hsp92II CATG 7 cut(s) 339, 450, 460, 523, 544, 556, 697
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 3 cut(s) 493, 602, 798
LmnI GCTCC 1 cut(s) 659
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 2 cut(s) 828, 861
MabI ACCWGGT 2 cut(s) 219, 574
MaeIII GTNAC 3 cut(s) 88, 745, 1041
MalI GATC 3 cut(s) 495, 604, 800
MboI GATC 3 cut(s) 493, 602, 798
MboII GAAGA 4 cut(s) 184, 518, 629, 653
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 5 cut(s) 148, 312, 461, 625, 701
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 6 cut(s) 28, 55, 79, 123, 168, 783
MseI TTAA 5 cut(s) 42, 147, 156, 464, 708
MslI CAYNNNNRTG 2 cut(s) 451, 524
MspA1I CMGCKG 1 cut(s) 765
MspR9I CCNGG 3 cut(s) 221, 576, 657
MvaI CCWGG 3 cut(s) 221, 576, 657
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 3 cut(s) 493, 602, 798
NlaIII CATG 7 cut(s) 339, 450, 460, 523, 544, 556, 697
NlaIV GGNNCC 2 cut(s) 289, 687
NmeAIII GCCGAG 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 1041
NspI RCATGY 3 cut(s) 339, 523, 697
NspV TTCGAA 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PfeI GAWTC 1 cut(s) 413
PflMI CCANNNNNTGG 1 cut(s) 578
PfoI TCCNGGA 1 cut(s) 655
PkrI GCNGC 3 cut(s) 518, 664, 767
PshBI ATTAAT 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 191
Psp6I CCWGG 3 cut(s) 219, 574, 655
PspGI CCWGG 3 cut(s) 219, 574, 655
PspN4I GGNNCC 2 cut(s) 289, 687
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 798
RsaI GTAC 4 cut(s) 284, 482, 713, 908
RsaNI GTAC 4 cut(s) 283, 481, 712, 907
RseI CAYNNNNRTG 2 cut(s) 451, 524
SacI GAGCTC 1 cut(s) 191
SaqAI TTAA 5 cut(s) 42, 147, 156, 464, 708
SatI GCNGC 3 cut(s) 517, 663, 766
Sau3AI GATC 3 cut(s) 493, 602, 798
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 3 cut(s) 221, 576, 657
SduI GDGCHC 1 cut(s) 191
SexAI ACCWGGT 2 cut(s) 219, 574
SfaNI GCATC 2 cut(s) 828, 861
SfcI CTRYAG 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 451, 524
Sse9I AATT 5 cut(s) 148, 312, 461, 625, 701
SsiI CCGC 6 cut(s) 143, 167, 516, 697, 765, 887
SstI GAGCTC 1 cut(s) 191
StyD4I CCNGG 3 cut(s) 219, 574, 655
TaaI ACNGT 3 cut(s) 287, 751, 902
TaqI TCGA 2 cut(s) 80, 342
TasI AATT 5 cut(s) 148, 312, 461, 625, 701
TatI WGTACW 3 cut(s) 480, 711, 906
TauI GCSGC 2 cut(s) 519, 768
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 5 cut(s) 42, 147, 156, 464, 708
Tru9I TTAA 5 cut(s) 42, 147, 156, 464, 708
TscAI CASTG 4 cut(s) 234, 672, 748, 841
TseFI GTSAC 1 cut(s) 1041
TseI GCWGC 1 cut(s) 662
Tsp45I GTSAC 1 cut(s) 1041
TspDTI ATGAA 1 cut(s) 473
TspRI CASTG 4 cut(s) 234, 672, 748, 841
Van91I CCANNNNNTGG 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 287
VspI ATTAAT 1 cut(s) 464
XapI RAATTY 1 cut(s) 701
XceI RCATGY 3 cut(s) 339, 523, 697
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.