Rmu_sc0001836.1_g000050

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001836.1
OG0000404
Physical Location & Seq
Reverse (-)
186241 .. 186834
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001836.1_g000050.1.cds

Sequence Viewer

Length: 594 bp
atgcaatgcttgaagtacaacaagggtgatcgttggtttgaagaaatacgcggcatgttgatggttgtcgctaccatgatatcaaccatgactttccaagcagccatcaacccaccaggtggtgtttggcaagataatgtcaaatcatttagcattgaaggaaagaaatactgttcaacagaagacccttgctttcctggaactgcagtgttgggcgatgtgtgggcacccgacatgcgggaattcattaagtacaacaccatctctttcgttgcttctctcaacaccatttttcttatcagcggctttcctctgacaaatcggatatgtatatggttcttatcaatggctatgtgcattactatcacattcacgggtcttacttacctaactggtgtttacttggtgatgccattttctgttgcagatcctgtttacagtaagtacaggccattaggaattcgtgtttggattggattgcttgttatggttggtttattccatacttttcgttttctcacttggcttgtgaagaaggtgaactctaaattcagagatatgagcagggcaaatggtatgtcactatgtccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

197

Amino Acids

22.4

Weight (kDa)

9.2

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 1 cut(s) 51
AciI CCGC 3 cut(s) 51, 238, 303
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 3 cut(s) 242, 459, 548
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 3 cut(s) 17, 254, 446
AfiI CCNNNNNNNGG 2 cut(s) 119, 237
AgsI TTSAA 4 cut(s) 13, 41, 158, 177
AjnI CCWGG 2 cut(s) 115, 196
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AlwI GGATC 1 cut(s) 422
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 3 cut(s) 242, 459, 548
ArsI GACNNNNNNTTYG 1 cut(s) 563
AsuHPI GGTGA 3 cut(s) 38, 418, 550
BaeGI GKGCMC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 113
BccI CCATC 3 cut(s) 55, 113, 269
BciT130I CCWGG 2 cut(s) 117, 198
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 52, 102, 304
BlsI GCNGC 3 cut(s) 53, 103, 305
Bme1390I CCNGG 2 cut(s) 117, 198
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 117, 198
BmsI GCATC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 237
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 2 cut(s) 117, 198
BseLI CCNNNNNNNGG 2 cut(s) 119, 237
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 397
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 451
BshNI GGYRCC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 119, 237
BsnI GGCC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 2 cut(s) 28, 427
BspACI CCGC 3 cut(s) 51, 238, 303
BspANI GGCC 1 cut(s) 451
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 1 cut(s) 397
BssMI GATC 2 cut(s) 28, 427
Bst2UI CCWGG 2 cut(s) 117, 198
Bst4CI ACNGT 2 cut(s) 173, 440
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 2 cut(s) 31, 430
BstMBI GATC 2 cut(s) 28, 427
BstNI CCWGG 2 cut(s) 117, 198
BstNSI RCATGY 2 cut(s) 58, 238
BstSCI CCNGG 2 cut(s) 115, 196
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 1 cut(s) 451
BtgZI GCGATG 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
CaiI CAGNNNCTG 1 cut(s) 431
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 3 cut(s) 16, 253, 445
CviAII CATG 4 cut(s) 55, 76, 88, 235
CviJI RGCY 5 cut(s) 104, 306, 350, 451, 526
CviKI_1 RGCY 5 cut(s) 104, 306, 350, 451, 526
CviQI GTAC 3 cut(s) 16, 253, 445
DpnI GATC 2 cut(s) 30, 429
DpnII GATC 2 cut(s) 28, 427
DraIII CACNNNGTG 1 cut(s) 119
Eco32I GATATC 1 cut(s) 81
EcoRI GAATTC 2 cut(s) 242, 459
EcoRII CCWGG 2 cut(s) 115, 196
EcoRV GATATC 1 cut(s) 81
FaeI CATG 4 cut(s) 58, 79, 91, 238
FatI CATG 4 cut(s) 54, 75, 87, 234
FauI CCCGC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 52, 102, 304
Fsp4HI GCNGC 3 cut(s) 52, 102, 304
GluI GCNGC 3 cut(s) 52, 102, 304
HaeIII GGCC 1 cut(s) 451
Hin1II CATG 4 cut(s) 58, 79, 91, 238
HphI GGTGA 3 cut(s) 38, 418, 550
Hpy166II GTNNAC 3 cut(s) 400, 436, 541
Hpy188I TCNGA 3 cut(s) 315, 324, 554
Hpy8I GTNNAC 3 cut(s) 400, 436, 541
HpyAV CCTTC 2 cut(s) 152, 529
HpyCH4III ACNGT 2 cut(s) 173, 440
HpyCH4V TGCA 4 cut(s) 4, 206, 357, 425
Hsp92II CATG 4 cut(s) 58, 79, 91, 238
Kzo9I GATC 2 cut(s) 28, 427
LpnPI CCDG 8 cut(s) 102, 129, 183, 210, 378, 433, 444, 550
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 1 cut(s) 399
MabI ACCWGGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 579
MalI GATC 2 cut(s) 30, 429
MboI GATC 2 cut(s) 28, 427
MboII GAAGA 3 cut(s) 53, 194, 544
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 3 cut(s) 242, 459, 548
MnlI CCTC 1 cut(s) 321
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 117, 198
MvaI CCWGG 2 cut(s) 117, 198
MvnI CGCG 1 cut(s) 51
NdeII GATC 2 cut(s) 28, 427
NlaIII CATG 4 cut(s) 58, 79, 91, 238
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 579
NspI RCATGY 2 cut(s) 58, 238
PflMI CCANNNNNTGG 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 3 cut(s) 53, 103, 305
Psp6I CCWGG 2 cut(s) 115, 196
PspGI CCWGG 2 cut(s) 115, 196
PspN4I GGNNCC 1 cut(s) 228
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 3 cut(s) 17, 254, 446
RsaNI GTAC 3 cut(s) 16, 253, 445
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 3 cut(s) 52, 102, 304
Sau3AI GATC 2 cut(s) 28, 427
ScrFI CCNGG 2 cut(s) 117, 198
SduI GDGCHC 1 cut(s) 229
SetI ASST 3 cut(s) 121, 390, 540
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 3 cut(s) 242, 459, 548
SsiI CCGC 3 cut(s) 51, 238, 303
StyD4I CCNGG 2 cut(s) 115, 196
TaaI ACNGT 2 cut(s) 173, 440
TasI AATT 3 cut(s) 242, 459, 548
TatI WGTACW 3 cut(s) 15, 252, 444
TauI GCSGC 2 cut(s) 54, 306
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 579
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 579
TspDTI ATGAA 1 cut(s) 235
TspRI CASTG 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 119
XapI RAATTY 3 cut(s) 242, 459, 548
XceI RCATGY 2 cut(s) 58, 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.