Prupe.3G154100_v2.0.a1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000404
Physical Location & Seq
Forward (+)
16947243 .. 16954836
7594 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G154100.1

Sequence Viewer

Length: 564 bp
ATGACAGCTCTTGGCATTTCAGAAAGCACTTTGGAAACTAGTGCATCATATCATGGGGTGATACCTGCTGTGAAAGAAGAACCAAATGGCGTGATCCAGTTATATTCCTCAGAGAAAAATGCAAGAGACTCGAGCAGCCTACCTGAACTTGATCAAATTTTGGTTGAGCCAGGTATGGAAACAAAAAGAACTCCTGCCGCTGCTGTTCAGATTCAGCAGCACACAGCAATAGCAACAGCTTGGTGGCTGATAAATAGACTGGTAAATTGCTTGGAATACCCAAAAACTTGGTTGGAAGAGACACGCAGCATGCTGATGATTGTGGCAACCATGATATCGACTACAACTTTCCAAGCTGCAGTTAACCCACCTGGTGGTGTTTGGCAAGAGAATAATACAAATAGTAGCGCTAGAGGCACTACTTATTGCACCCAAAATAACATATGCTTGGCTGGAACTTCAGTGGCAGGCAGCGCCTTCCCCAAAGAATTCCTCGCGTTCGTAACATTCAATACCATCTCGTTTCTTGCTTCTCTCAGTGTCAACCTTTTGCTTGTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

188

Amino Acids

20.22

Weight (kDa)

4.98

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 374
AccII CGCG 1 cut(s) 497
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 88
AcsI RAATTY 2 cut(s) 156, 488
AcuI CTGAAG 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 374
AfeI AGCGCT 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 1 cut(s) 511
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 2 cut(s) 169, 370
AluBI AGCT 3 cut(s) 8, 239, 356
AluI AGCT 3 cut(s) 8, 239, 356
Alw26I GTCTC 2 cut(s) 120, 293
AlwI GGATC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 130
Aor51HI AGCGCT 1 cut(s) 409
ApeKI GCWGC 6 cut(s) 135, 200, 217, 306, 356, 471
ApoI RAATTY 2 cut(s) 156, 488
AspLEI GCGC 2 cut(s) 410, 476
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 130
BbvI GCAGC 6 cut(s) 147, 187, 229, 318, 343, 483
BccI CCATC 1 cut(s) 524
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 2 cut(s) 171, 372
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 120, 293
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 2 cut(s) 39, 411
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 2 cut(s) 411, 477
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 7 cut(s) 136, 198, 201, 218, 307, 357, 472
BlsI GCNGC 7 cut(s) 137, 199, 202, 219, 308, 358, 473
Bme1390I CCNGG 2 cut(s) 171, 372
BmeT110I CYCGRG 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 171, 372
BmsI GCATC 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 97, 264
BseBI CCWGG 2 cut(s) 171, 372
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 2 cut(s) 123, 550
BseNI ACTGG 2 cut(s) 97, 264
BseXI GCAGC 6 cut(s) 147, 187, 229, 318, 343, 483
Bsh1236I CGCG 1 cut(s) 497
BsiHKCI CYCGRG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 2 cut(s) 120, 293
BsoBI CYCGRG 1 cut(s) 130
Bsp143I GATC 2 cut(s) 93, 151
BspACI CCGC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 122, 549
BspFNI CGCG 1 cut(s) 497
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 1 cut(s) 88
BsrI ACTGG 2 cut(s) 97, 264
BssMI GATC 2 cut(s) 93, 151
Bst2UI CCWGG 2 cut(s) 171, 372
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 311, 469
BstDEI CTNAG 2 cut(s) 109, 536
BstFNI CGCG 1 cut(s) 497
BstH2I RGCGCY 2 cut(s) 411, 477
BstHHI GCGC 2 cut(s) 410, 476
BstKTI GATC 2 cut(s) 96, 154
BstMAI GTCTC 2 cut(s) 120, 293
BstMBI GATC 2 cut(s) 93, 151
BstMWI GCNNNNNNNGC 2 cut(s) 414, 473
BstNI CCWGG 2 cut(s) 171, 372
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 169, 370
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 6 cut(s) 147, 187, 229, 318, 343, 483
BstXI CCANNNNNNTGG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 468, 544
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 311, 469
CfoI GCGC 2 cut(s) 410, 476
CsiI ACCWGGT 1 cut(s) 370
CviAII CATG 3 cut(s) 53, 310, 331
CviJI RGCY 8 cut(s) 8, 138, 169, 239, 247, 356, 452, 561
CviKI_1 RGCY 8 cut(s) 8, 138, 169, 239, 247, 356, 452, 561
DdeI CTNAG 2 cut(s) 109, 536
DpnI GATC 2 cut(s) 95, 153
DpnII GATC 2 cut(s) 93, 151
DraIII CACNNNGTG 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco32I GATATC 1 cut(s) 336
Eco47III AGCGCT 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 169, 370
EcoRV GATATC 1 cut(s) 336
FaeI CATG 3 cut(s) 56, 313, 334
FaiI YATR 8 cut(s) 49, 54, 103, 176, 311, 332, 443, 445
FatI CATG 3 cut(s) 52, 309, 330
FauNDI CATATG 1 cut(s) 443
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 7 cut(s) 136, 198, 201, 218, 307, 357, 472
Fsp4HI GCNGC 7 cut(s) 136, 198, 201, 218, 307, 357, 472
FspBI CTAG 2 cut(s) 39, 411
GlaI GCGC 2 cut(s) 409, 475
GluI GCNGC 7 cut(s) 136, 198, 201, 218, 307, 357, 472
HaeII RGCGCY 2 cut(s) 411, 477
HhaI GCGC 2 cut(s) 410, 476
Hin1II CATG 3 cut(s) 56, 313, 334
Hin6I GCGC 2 cut(s) 408, 474
HinP1I GCGC 2 cut(s) 408, 474
HincII GTYRAC 2 cut(s) 364, 544
HindII GTYRAC 2 cut(s) 364, 544
HinfI GANTC 2 cut(s) 128, 211
HpaI GTTAAC 1 cut(s) 364
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 364, 544
Hpy188I TCNGA 3 cut(s) 22, 112, 210
Hpy8I GTNNAC 2 cut(s) 364, 544
HpyAV CCTTC 1 cut(s) 487
HpyCH4V TGCA 4 cut(s) 44, 122, 359, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 473
HpyF3I CTNAG 2 cut(s) 109, 536
Hsp92II CATG 3 cut(s) 56, 313, 334
HspAI GCGC 2 cut(s) 408, 474
Ksp22I TGATCA 1 cut(s) 151
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 2 cut(s) 93, 151
Lsp1109I GCAGC 6 cut(s) 147, 187, 229, 318, 343, 483
LweI GCATC 1 cut(s) 53
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 2 cut(s) 39, 411
MaeIII GTNAC 1 cut(s) 502
MalI GATC 2 cut(s) 95, 153
MboI GATC 2 cut(s) 93, 151
MboII GAAGA 2 cut(s) 89, 308
MluCI AATT 3 cut(s) 156, 265, 488
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 3 cut(s) 118, 407, 503
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 171, 372
MvaI CCWGG 2 cut(s) 171, 372
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 414, 473
NdeI CATATG 1 cut(s) 443
NdeII GATC 2 cut(s) 93, 151
NlaIII CATG 3 cut(s) 56, 313, 334
NspI RCATGY 1 cut(s) 313
PaeI GCATGC 1 cut(s) 313
PaeR7I CTCGAG 1 cut(s) 130
PfeI GAWTC 1 cut(s) 211
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 7 cut(s) 137, 199, 202, 219, 308, 358, 473
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 169, 370
PspGI CCWGG 2 cut(s) 169, 370
PspXI VCTCGAGB 1 cut(s) 130
PstI CTGCAG 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 7 cut(s) 136, 198, 201, 218, 307, 357, 472
Sau3AI GATC 2 cut(s) 93, 151
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 171, 372
SetI ASST 8 cut(s) 10, 67, 145, 175, 241, 358, 373, 549
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 357
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SpeI ACTAGT 1 cut(s) 38
SphI GCATGC 1 cut(s) 313
Sse9I AATT 3 cut(s) 156, 265, 488
SsiI CCGC 1 cut(s) 198
SspMI CTAG 2 cut(s) 39, 411
StyD4I CCNGG 2 cut(s) 169, 370
TaqI TCGA 2 cut(s) 131, 338
TasI AATT 3 cut(s) 156, 265, 488
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 468, 544
TseI GCWGC 6 cut(s) 135, 200, 217, 306, 356, 471
TspRI CASTG 2 cut(s) 468, 544
Van91I CCANNNNNTGG 1 cut(s) 374
XapI RAATTY 2 cut(s) 156, 488
XceI RCATGY 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 130
XspI CTAG 2 cut(s) 39, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.