Rw1G013880

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
30929506 .. 30931227
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013880.1

Sequence Viewer

Length: 1431 bp
ATGGCAACTAGACAAGATGAAGGAGACGCAATAGAGCTAGTCTACAAGGCAGCAGTTGCGGGGTGCGTATCTACCTTAAACAAATTGATCGAAACAAGCCCACTCATTCTTAGAAAGTTTTCTTTGACTACTTTCACTGAAACTCCCTTGCATGTATCTGCTTTGCTCGGCCACCATGACTTTACCAGAACCCTTCTCACTCATAATCCCAACCTCGCGAAGGAGTTGGACTCTTACAGACGCTCACCTCTCCACTTGGCTTCTGCCGAGGGCCACGAGGAGATCGTTCAAGTTTTGTTACATGCAGATCATGTCGATGTCTGCTTGTTTCATGATCAGGTTGGCAGAATTCCGCTTCACTATTCAGCCATGAGAGGACGACTTGAGGTCCTCAAGAAGTTGATACGAGCAAAGCCAGAGTCCATATTTGTTTCGGTTCTGAATAGATCAAGAGAAACGGCTTTGCACTTGTGTGTTAAATATAATCAATTGGAGTGCTTGAAACTGTTAGTCGAACATGTGGGTGAACAAAAATCAGAATTCCTCAACTCAAAAGACACTGTTGGGGGCCAGACTATCCTGCACCTAGCTTTGGTTCTGAAGCAAACTGAGACAATAAGGTACCTGCTTTCTATACCTATTATACGAGAAAAAGCAAATTATGTGATCAGATCTTATGTCTTGGAGCACAACTCAGGAGATAGCAGAAATCTTGAACTTCAAAATATTGTAATCGGCCACAACGATGACCACCACCATCAGCAACCATTGTCATCTGTACCGCCAGGAACGACTGCTAATGTTCTTGACAACAATGCAGCGGAAAAAGTGTCAAAGGCAAGTTGGAGGACCAAGCTAGTGAAATACCCAACTGATTGGCTGGAAGAAACCCGTGGCATGCTGATTGTTGTGGCCGGCATGATCGCAACGATGACTTTCCAAGCTGCAGTTAATCCACCCGGAGGTGTTTGGCAAGAAAATAATACGAATTCTACAGATAATAATTACGGATTTCCTTCCTGCACCGAGTCACAGATATGTTACGCTGGAACGGCAGTTTTAGCCTATGGCATGGACAAGGCATCTTACTTCGTCCTGTTCATGAATTTCAATACCATCTCCTTCCTTGCTTCTTTGAGTGTTACTCTTTTACTTATTAGCGGTTTTCCTCTCCATAACCGGCTTTGTATGTGGCTCTTATCAATGGGTATGTGTATCGTTCTCTCTTGCCTGGCACTAAGCTATCTAATTATTGTGAACATGATCACCCCTAATCAGCCTTTCGAGCTATTTAAGAGTACTACTTACAATATTATCATCTGCGTTTGGATTTTGTTTCTGCTTGCCATGGTCGTTTTAATCCACACACTTCGCGTTTTCATTTGGCTGGGGAAGAGGCTGCGTGATCGTCGCAGATTCAGACATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

476

Amino Acids

53.76

Weight (kDa)

8.45

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 105 5.9e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 84 - 135 8.7e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 119 - 211 4.1e-13 Ankyrin repeats (3 copies)
PGG PF13962 292 - 416 1.2e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 633
Acc65I GGTACC 1 cut(s) 621
AccB1I GGYRCC 1 cut(s) 621
AccI GTMKAC 1 cut(s) 42
AccII CGCG 2 cut(s) 218, 1374
AciI CCGC 5 cut(s) 59, 353, 782, 821, 1161
AcoI YGGCCR 3 cut(s) 169, 736, 912
AcsI RAATTY 4 cut(s) 348, 539, 988, 1105
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 3 cut(s) 623, 780, 1300
AfiI CCNNNNNNNGG 3 cut(s) 220, 592, 962
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 5 cut(s) 290, 502, 716, 722, 1111
AhdI GACNNNNNGTC 1 cut(s) 386
AjnI CCWGG 2 cut(s) 784, 1230
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 6 cut(s) 37, 590, 856, 944, 1242, 1288
AluI AGCT 6 cut(s) 37, 590, 856, 944, 1242, 1288
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 2 cut(s) 18, 605
AoxI GGCC 5 cut(s) 169, 271, 568, 736, 912
ApeKI GCWGC 4 cut(s) 50, 818, 944, 1399
ApoI RAATTY 4 cut(s) 348, 539, 988, 1105
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
Asp700I GAANNNNTTC 1 cut(s) 118
Asp718I GGTACC 1 cut(s) 621
AspS9I GGNCC 4 cut(s) 271, 388, 568, 849
AsuC2I CCSGG 1 cut(s) 960
AsuHPI GGTGA 3 cut(s) 237, 536, 1258
AvaII GGWCC 2 cut(s) 388, 849
BanI GGYRCC 1 cut(s) 621
BauI CACGAG 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 4 cut(s) 62, 830, 931, 1386
BccI CCATC 2 cut(s) 765, 1124
BceAI ACGGC 2 cut(s) 474, 1068
BciT130I CCWGG 2 cut(s) 786, 1232
BclI TGATCA 3 cut(s) 334, 666, 1263
BcnI CCSGG 1 cut(s) 960
BcoDI GTCTC 2 cut(s) 18, 605
BfaI CTAG 4 cut(s) 9, 38, 587, 857
BfmI CTRYAG 2 cut(s) 945, 993
BfuAI ACCTGC 1 cut(s) 633
BglII AGATCT 1 cut(s) 671
BisI GCNGC 4 cut(s) 51, 819, 945, 1400
BlsI GCNGC 4 cut(s) 52, 820, 946, 1401
BmcAI AGTACT 1 cut(s) 1300
Bme1390I CCNGG 3 cut(s) 786, 960, 1232
Bme18I GGWCC 2 cut(s) 388, 849
BmeRI GACNNNNNGTC 1 cut(s) 386
BmgT120I GGNCC 4 cut(s) 271, 388, 568, 849
BmiI GGNNCC 2 cut(s) 569, 623
BmrFI CCNGG 3 cut(s) 786, 960, 1232
BmsI GCATC 1 cut(s) 1091
BplI GAGNNNNNCTC 6 cut(s) 215, 247, 677, 709, 1129, 1161
BpuEI CTTGAG 2 cut(s) 377, 404
BpuMI CCSGG 1 cut(s) 960
BsaJI CCNNGG 3 cut(s) 267, 892, 1347
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 592, 962
Bse118I RCCGGY 2 cut(s) 914, 1179
BseBI CCWGG 2 cut(s) 786, 1232
BseDI CCNNGG 3 cut(s) 267, 892, 1347
BseLI CCNNNNNNNGG 3 cut(s) 220, 592, 962
BseMII CTCAG 2 cut(s) 600, 708
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 4 cut(s) 62, 830, 931, 1386
BseYI CCCAGC 1 cut(s) 1387
BsgI GTGCAG 2 cut(s) 566, 1006
Bsh1236I CGCG 2 cut(s) 218, 1374
BshFI GGCC 5 cut(s) 171, 273, 570, 738, 914
BshNI GGYRCC 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 690
BsiSI CCGG 3 cut(s) 915, 960, 1180
BslI CCNNNNNNNGG 3 cut(s) 220, 592, 962
BsmAI GTCTC 2 cut(s) 18, 605
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 5 cut(s) 171, 273, 570, 738, 914
Bsp1286I GDGCHC 1 cut(s) 690
Bsp19I CCATGG 1 cut(s) 1347
Bsp68I TCGCGA 1 cut(s) 218
BspACI CCGC 5 cut(s) 59, 353, 782, 821, 1161
BspANI GGCC 5 cut(s) 171, 273, 570, 738, 914
BspCNI CTCAG 2 cut(s) 601, 707
BspFNI CGCG 2 cut(s) 218, 1374
BspHI TCATGA 2 cut(s) 331, 1101
BspLI GGNNCC 2 cut(s) 569, 623
BspMAI CTGCAG 1 cut(s) 949
BspMI ACCTGC 1 cut(s) 633
BspT107I GGYRCC 1 cut(s) 621
BsrFI RCCGGY 2 cut(s) 914, 1179
BssAI RCCGGY 2 cut(s) 914, 1179
BssECI CCNNGG 3 cut(s) 267, 892, 1347
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 1347
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 786, 1232
Bst4CI ACNGT 2 cut(s) 507, 562
Bst6I CTCTTC 1 cut(s) 1388
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 899, 916, 1344
BstDEI CTNAG 4 cut(s) 110, 609, 694, 1238
BstDSI CCRYGG 2 cut(s) 892, 1347
BstENI CCTNNNNNAGG 1 cut(s) 218
BstFNI CGCG 2 cut(s) 218, 1374
BstMAI GTCTC 2 cut(s) 18, 605
BstMWI GCNNNNNNNGC 4 cut(s) 56, 1052, 1061, 1285
BstNI CCWGG 2 cut(s) 786, 1232
BstNSI RCATGY 4 cut(s) 155, 305, 521, 901
BstSCI CCNGG 3 cut(s) 784, 958, 1230
BstSFI CTRYAG 2 cut(s) 945, 993
BstUI CGCG 2 cut(s) 218, 1374
BstV1I GCAGC 4 cut(s) 62, 830, 931, 1386
BstX2I RGATCY 1 cut(s) 671
BstXI CCANNNNNNTGG 1 cut(s) 876
BstYI RGATCY 1 cut(s) 671
BsuRI GGCC 5 cut(s) 171, 273, 570, 738, 914
BtgI CCRYGG 2 cut(s) 892, 1347
BtsIMutI CAGTG 2 cut(s) 135, 558
BtuMI TCGCGA 1 cut(s) 218
BveI ACCTGC 1 cut(s) 633
Cac8I GCNNGC 3 cut(s) 899, 916, 1344
CciI TCATGA 2 cut(s) 331, 1101
Cfr10I RCCGGY 2 cut(s) 914, 1179
Cfr13I GGNCC 4 cut(s) 271, 388, 568, 849
CseI GACGC 2 cut(s) 35, 249
Csp6I GTAC 3 cut(s) 622, 779, 1299
CviQI GTAC 3 cut(s) 622, 779, 1299
DdeI CTNAG 4 cut(s) 110, 609, 694, 1238
DriI GACNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 3 cut(s) 169, 736, 912
Eam1104I CTCTTC 1 cut(s) 1388
Eam1105I GACNNNNNGTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 1388
Eco130I CCWWGG 1 cut(s) 1347
Eco47I GGWCC 2 cut(s) 388, 849
Eco57I CTGAAG 1 cut(s) 620
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 388
EcoRI GAATTC 3 cut(s) 348, 539, 988
EcoRII CCWGG 2 cut(s) 784, 1230
EcoT14I CCWWGG 1 cut(s) 1347
ErhI CCWWGG 1 cut(s) 1347
Esp3I CGTCTC 1 cut(s) 18
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 3 cut(s) 334, 666, 1263
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 51, 819, 945, 1400
Fsp4HI GCNGC 4 cut(s) 51, 819, 945, 1400
FspBI CTAG 4 cut(s) 9, 38, 587, 857
GluI GCNGC 4 cut(s) 51, 819, 945, 1400
GsaI CCCAGC 1 cut(s) 1391
HaeIII GGCC 5 cut(s) 171, 273, 570, 738, 914
HapII CCGG 3 cut(s) 915, 960, 1180
HgaI GACGC 2 cut(s) 35, 249
HinfI GANTC 4 cut(s) 230, 419, 1028, 1416
HpaII CCGG 3 cut(s) 915, 960, 1180
HphI GGTGA 3 cut(s) 237, 536, 1258
Hpy166II GTNNAC 3 cut(s) 43, 527, 1258
Hpy188I TCNGA 5 cut(s) 441, 538, 600, 671, 1421
Hpy188III TCNNGA 8 cut(s) 217, 332, 394, 450, 696, 713, 806, 1102
Hpy8I GTNNAC 3 cut(s) 43, 527, 1258
Hpy99I CGWCG 1 cut(s) 1413
HpyAV CCTTC 5 cut(s) 14, 203, 214, 1026, 1132
HpyCH4III ACNGT 2 cut(s) 507, 562
HpyCH4V TGCA 7 cut(s) 151, 305, 466, 583, 818, 947, 1023
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 1052, 1061, 1285
HpyF3I CTNAG 4 cut(s) 110, 609, 694, 1238
KpnI GGTACC 1 cut(s) 625
KroI GCCGGC 1 cut(s) 914
KroNI GCCGGC 1 cut(s) 916
Ksp22I TGATCA 3 cut(s) 334, 666, 1263
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 4 cut(s) 62, 830, 931, 1386
LweI GCATC 1 cut(s) 1091
MaeI CTAG 4 cut(s) 9, 38, 587, 857
MaeIII GTNAC 4 cut(s) 297, 1029, 1040, 1141
MboII GAAGA 2 cut(s) 896, 1405
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 1 cut(s) 671
MhlI GDGCHC 1 cut(s) 690
MlyI GAGTC 3 cut(s) 224, 428, 1037
MmeI TCCRAC 2 cut(s) 207, 824
MroNI GCCGGC 1 cut(s) 914
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 6 cut(s) 77, 477, 951, 1293, 1358, 1429
MslI CAYNNNNRTG 5 cut(s) 315, 471, 522, 744, 1036
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 3 cut(s) 915, 960, 1180
MspR9I CCNGG 3 cut(s) 786, 960, 1232
MunI CAATTG 1 cut(s) 488
MvaI CCWGG 2 cut(s) 786, 1232
MvnI CGCG 2 cut(s) 218, 1374
MwoI GCNNNNNNNGC 4 cut(s) 56, 1052, 1061, 1285
NaeI GCCGGC 1 cut(s) 916
NciI CCSGG 1 cut(s) 960
NcoI CCATGG 1 cut(s) 1347
NgoMIV GCCGGC 1 cut(s) 914
NlaIV GGNNCC 2 cut(s) 569, 623
NmeAIII GCCGAG 2 cut(s) 147, 292
NmuCI GTSAC 1 cut(s) 1029
NruI TCGCGA 1 cut(s) 218
NspI RCATGY 4 cut(s) 155, 305, 521, 901
OliI CACNNNNGTG 1 cut(s) 471
PaeI GCATGC 1 cut(s) 901
PagI TCATGA 2 cut(s) 331, 1101
PciI ACATGT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 741
PdiI GCCGGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 1416
PkrI GCNGC 4 cut(s) 52, 820, 946, 1401
PleI GAGTC 3 cut(s) 224, 427, 1036
PpsI GAGTC 3 cut(s) 224, 427, 1036
PpuMI RGGWCCY 1 cut(s) 388
PscI ACATGT 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 784, 1230
PspFI CCCAGC 1 cut(s) 1387
PspGI CCWGG 2 cut(s) 784, 1230
PspN4I GGNNCC 2 cut(s) 569, 623
PspPI GGNCC 4 cut(s) 271, 388, 568, 849
PspPPI RGGWCCY 1 cut(s) 388
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 1 cut(s) 671
RruI TCGCGA 1 cut(s) 218
RsaI GTAC 3 cut(s) 623, 780, 1300
RsaNI GTAC 3 cut(s) 622, 779, 1299
RseI CAYNNNNRTG 5 cut(s) 315, 471, 522, 744, 1036
SaqAI TTAA 6 cut(s) 77, 477, 951, 1293, 1358, 1429
SatI GCNGC 4 cut(s) 51, 819, 945, 1400
Sau96I GGNCC 4 cut(s) 271, 388, 568, 849
ScaI AGTACT 1 cut(s) 1300
SchI GAGTC 3 cut(s) 224, 428, 1037
ScrFI CCNGG 3 cut(s) 786, 960, 1232
SduI GDGCHC 1 cut(s) 690
SfaNI GCATC 1 cut(s) 1091
SfcI CTRYAG 2 cut(s) 945, 993
SinI GGWCC 2 cut(s) 388, 849
SmiMI CAYNNNNRTG 5 cut(s) 315, 471, 522, 744, 1036
SmlI CTYRAG 2 cut(s) 383, 392
SmoI CTYRAG 2 cut(s) 383, 392
SphI GCATGC 1 cut(s) 901
SsiI CCGC 5 cut(s) 59, 353, 782, 821, 1161
SspI AATATT 2 cut(s) 727, 1312
SspMI CTAG 4 cut(s) 9, 38, 587, 857
StyD4I CCNGG 3 cut(s) 784, 958, 1230
StyI CCWWGG 1 cut(s) 1347
TaaI ACNGT 2 cut(s) 507, 562
TaqI TCGA 4 cut(s) 90, 315, 513, 1284
TatI WGTACW 1 cut(s) 1298
TfiI GAWTC 1 cut(s) 1416
Tru1I TTAA 6 cut(s) 77, 477, 951, 1293, 1358, 1429
Tru9I TTAA 6 cut(s) 77, 477, 951, 1293, 1358, 1429
TscAI CASTG 2 cut(s) 142, 565
TseFI GTSAC 1 cut(s) 1029
TseI GCWGC 4 cut(s) 50, 818, 944, 1399
Tsp45I GTSAC 1 cut(s) 1029
TspDTI ATGAA 5 cut(s) 33, 320, 1090, 1118, 1369
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 2 cut(s) 142, 565
VpaK11BI GGWCC 2 cut(s) 388, 849
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 4 cut(s) 348, 539, 988, 1105
XceI RCATGY 4 cut(s) 155, 305, 521, 901
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 4 cut(s) 9, 38, 587, 857
ZrmI AGTACT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.