MD12G1213900.v1.1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000404
Physical Location & Seq
Forward (+)
29215997 .. 29223733
7737 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1213900.v1.1.491

Sequence Viewer

Length: 639 bp
ATGTTAGATATCTTAGAGTACAGCAGCGTTGCCAGAGAGGACTTTAGCAGAAGCTTAGAAATTCAACAGATTTTGATGGACGCAGGATTAATCAGAAGACAAAATAATGAAAATGATAAACCTAACTCAGATGTTGCCGCCGCTGCTGTTGTTGTACAAGTAGCACCATCGGAAATGGGATCAAAACCAGCAAGGTGGTGCTGGATAAAATTGATGAAATGGTTGAGATATCCGAGTAATTGGGTGGTCGAGACACGTGGCATGCTGATGGTTGTGGCTACGATGATCTCGACCATGACTTTTCAAGCCATAGTCAACCCACCAGGTGGTGTTTGGGAAACCAATAATACAAACACTACCATTTATTATTCTGGAACCAATGATAACAGACCAATTTGCAGTGAAGAGAGAACATGCATAGCTGGAACTGCAGTGTTAAGCTACGGTACTGATGACGTCTACAATTACTTCGCCGCTTTCCTAACATCCAATACCATCTCGTTCCTTGCTTCTTTGAGTGTTACCCTTTTGCTCGTTAGTGGATTTCCTCTCCACAATCGGTTCTGCACGTGGCTCCTATCGATGTCCATATGCGTCACTCTCACATTCCTGGCACTCACCTACAGCTACAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

213

Amino Acids

23.75

Weight (kDa)

5.14

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 80 - 208 4.9e-15 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 459
AciI CCGC 3 cut(s) 138, 141, 474
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 60
AcvI CACGTG 2 cut(s) 257, 570
AcyI GRCGYC 1 cut(s) 456
AdeI CACNNNGTG 1 cut(s) 326
AfaI GTAC 3 cut(s) 20, 156, 448
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 2 cut(s) 65, 305
AjnI CCWGG 2 cut(s) 322, 609
AluBI AGCT 4 cut(s) 54, 422, 441, 627
AluI AGCT 4 cut(s) 54, 422, 441, 627
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 24, 143
ApoI RAATTY 1 cut(s) 60
AseI ATTAAT 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 610
BbrPI CACGTG 2 cut(s) 257, 570
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 36, 130
BccI CCATC 4 cut(s) 70, 175, 262, 503
BciT130I CCWGG 2 cut(s) 324, 611
BcoDI GTCTC 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 429, 622
BisI GCNGC 5 cut(s) 25, 138, 141, 144, 474
BlsI GCNGC 5 cut(s) 26, 139, 142, 145, 475
Bme1390I CCNGG 2 cut(s) 324, 611
BmiI GGNNCC 2 cut(s) 376, 575
BmrFI CCNGG 2 cut(s) 324, 611
BpiI GAAGAC 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 581
BsaAI YACGTR 2 cut(s) 257, 570
BsaHI GRCGYC 1 cut(s) 456
Bsc4I CCNNNNNNNGG 1 cut(s) 326
BseBI CCWGG 2 cut(s) 324, 611
BseCI ATCGAT 1 cut(s) 581
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 36, 130
BsgI GTGCAG 1 cut(s) 550
BshVI ATCGAT 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 2 cut(s) 179, 285
BspACI CCGC 3 cut(s) 138, 141, 474
BspCNI CTCAG 1 cut(s) 140
BspDI ATCGAT 1 cut(s) 581
BspLI GGNNCC 2 cut(s) 376, 575
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 154
BssMI GATC 2 cut(s) 179, 285
BssNI GRCGYC 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 324, 611
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 456
BstAUI TGTACA 1 cut(s) 154
BstBAI YACGTR 2 cut(s) 257, 570
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 3 cut(s) 13, 55, 127
BstF5I GGATG 1 cut(s) 485
BstKTI GATC 2 cut(s) 182, 288
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 179, 285
BstMWI GCNNNNNNNGC 2 cut(s) 143, 428
BstNI CCWGG 2 cut(s) 324, 611
BstNSI RCATGY 2 cut(s) 265, 417
BstSCI CCNGG 2 cut(s) 322, 609
BstSFI CTRYAG 2 cut(s) 429, 622
BstV1I GCAGC 2 cut(s) 36, 130
BstV2I GAAGAC 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 581
BsuTUI ATCGAT 1 cut(s) 581
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 2 cut(s) 406, 438
BtsIMutI CAGTG 2 cut(s) 406, 438
Cac8I GCNNGC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 581
CseI GACGC 2 cut(s) 89, 583
CsiI ACCWGGT 1 cut(s) 322
Csp6I GTAC 3 cut(s) 19, 155, 447
CviAII CATG 3 cut(s) 262, 295, 414
CviJI RGCY 7 cut(s) 54, 278, 308, 422, 441, 574, 627
CviKI_1 RGCY 7 cut(s) 54, 278, 308, 422, 441, 574, 627
CviQI GTAC 3 cut(s) 19, 155, 447
DdeI CTNAG 3 cut(s) 13, 55, 127
DpnI GATC 2 cut(s) 181, 287
DpnII GATC 2 cut(s) 179, 285
DraIII CACNNNGTG 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco32I GATATC 2 cut(s) 10, 230
Eco72I CACGTG 2 cut(s) 257, 570
EcoRII CCWGG 2 cut(s) 322, 609
EcoRV GATATC 2 cut(s) 10, 230
EcoT22I ATGCAT 1 cut(s) 419
FaeI CATG 3 cut(s) 265, 298, 417
FaiI YATR 7 cut(s) 263, 296, 311, 415, 419, 590, 592
FatI CATG 3 cut(s) 261, 294, 413
FauNDI CATATG 1 cut(s) 590
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 5 cut(s) 25, 138, 141, 144, 474
FokI GGATG 1 cut(s) 472
Fsp4HI GCNGC 5 cut(s) 25, 138, 141, 144, 474
GluI GCNGC 5 cut(s) 25, 138, 141, 144, 474
HgaI GACGC 2 cut(s) 89, 583
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 3 cut(s) 265, 298, 417
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 52
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 2 cut(s) 316, 460
Hpy188I TCNGA 4 cut(s) 95, 130, 172, 234
Hpy188III TCNNGA 3 cut(s) 250, 289, 372
Hpy8I GTNNAC 2 cut(s) 316, 460
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4IV ACGT 3 cut(s) 256, 456, 569
HpyCH4V TGCA 4 cut(s) 399, 417, 431, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 428
HpyF3I CTNAG 3 cut(s) 13, 55, 127
HpySE526I ACGT 3 cut(s) 256, 456, 569
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 3 cut(s) 265, 298, 417
Kzo9I GATC 2 cut(s) 179, 285
LmnI GCTCC 1 cut(s) 579
Lsp1109I GCAGC 2 cut(s) 36, 130
MabI ACCWGGT 1 cut(s) 322
MaeII ACGT 3 cut(s) 256, 456, 569
MaeIII GTNAC 2 cut(s) 520, 595
MalI GATC 2 cut(s) 181, 287
MboI GATC 2 cut(s) 179, 285
MboII GAAGA 2 cut(s) 108, 416
MluCI AATT 5 cut(s) 60, 209, 238, 393, 463
MnlI CCTC 2 cut(s) 31, 558
Mph1103I ATGCAT 1 cut(s) 419
MseI TTAA 2 cut(s) 89, 437
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 324, 611
MvaI CCWGG 2 cut(s) 324, 611
MwoI GCNNNNNNNGC 2 cut(s) 143, 428
NdeI CATATG 1 cut(s) 590
NdeII GATC 2 cut(s) 179, 285
NlaIII CATG 3 cut(s) 265, 298, 417
NlaIV GGNNCC 2 cut(s) 376, 575
NmuCI GTSAC 1 cut(s) 595
NsiI ATGCAT 1 cut(s) 419
NspI RCATGY 2 cut(s) 265, 417
PaeI GCATGC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 5 cut(s) 26, 139, 142, 145, 475
PmaCI CACGTG 2 cut(s) 257, 570
PmlI CACGTG 2 cut(s) 257, 570
Ppu21I YACGTR 2 cut(s) 257, 570
PshBI ATTAAT 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 322, 609
PspCI CACGTG 2 cut(s) 257, 570
PspGI CCWGG 2 cut(s) 322, 609
PspN4I GGNNCC 2 cut(s) 376, 575
PstI CTGCAG 1 cut(s) 433
RsaI GTAC 3 cut(s) 20, 156, 448
RsaNI GTAC 3 cut(s) 19, 155, 447
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 89, 437
SatI GCNGC 5 cut(s) 25, 138, 141, 144, 474
Sau3AI GATC 2 cut(s) 179, 285
ScrFI CCNGG 2 cut(s) 324, 611
SexAI ACCWGGT 1 cut(s) 322
SfcI CTRYAG 2 cut(s) 429, 622
SmiMI CAYNNNNRTG 1 cut(s) 266
SphI GCATGC 1 cut(s) 265
Sse9I AATT 5 cut(s) 60, 209, 238, 393, 463
SsiI CCGC 3 cut(s) 138, 141, 474
StyD4I CCNGG 2 cut(s) 322, 609
TaaI ACNGT 1 cut(s) 446
TaiI ACGT 3 cut(s) 259, 459, 572
TaqI TCGA 3 cut(s) 249, 290, 581
TasI AATT 5 cut(s) 60, 209, 238, 393, 463
TatI WGTACW 2 cut(s) 18, 154
TauI GCSGC 3 cut(s) 140, 143, 476
Tru1I TTAA 2 cut(s) 89, 437
Tru9I TTAA 2 cut(s) 89, 437
TscAI CASTG 2 cut(s) 406, 438
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 2 cut(s) 24, 143
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 2 cut(s) 123, 230
TspRI CASTG 2 cut(s) 406, 438
Van91I CCANNNNNTGG 1 cut(s) 326
VspI ATTAAT 1 cut(s) 89
XapI RAATTY 1 cut(s) 60
XceI RCATGY 2 cut(s) 265, 417
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 459
ZraI GACGTC 1 cut(s) 457
Zsp2I ATGCAT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.