Rh1BG142200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000404
Physical Location & Seq
Reverse (-)
23646502 .. 23647443
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG142200.1

Sequence Viewer

Length: 942 bp
ATGTTTGTGCAGACGATTACATTCCTGGTTTCACTACCTGCTATAAAAAAGAATGTTGTAAACAATGTGGTCTTGGACACCTTAGAATATGGTCCCAGGGACTTTAGAAGCCTAGAAATTCAACAGATTTTGATGGACGCTTGTATCAATAAAAATGAAAAAGGTGAGCACCAGCAACAAGTATTCTCAGCAACACCACCTCTCCCGCCACCATCAGAATCCACTTTAGTCCGAAAGACAACAATCAAACCAGGACTACTCCCATTATTGTGGATGAAATTGCAATGCTTGAACTACAAACAACTACTCCTATGGTTGTGGATGAAATTAATGCAATGCTTGACTTATGACAAGGGTGATCATTGGTTGGATGAGATGCGCGGCATGTTGATGGTTGTCGCTACCATGATATCAACCATGACTTTCCAAGCAGCCATTAACCCACCAGGTGGTGTTTGGCAAGAGAATATCAGCAATAGCAGCATTGGAGAACTAGAATACTGCTCAAACACAAACTTATGCTATGCTGGAACAGCAGTGTTAGGCTATGTGTGGGAAGGCAGCATGCGACAATTCATTAAGTTCAACACCATCTCTTTCATTGCGTCTCTTTGTGTTACCCTTTTTCTTATCAGCGGATTTCCTCTGACAAATCGGATATGTATATGGTTCTTATCAATGGCTATGTGCATCACTATCACATTCACGGGTCTAACTTACCTAGTTGGCGTTTACATGGTGATGCCAAATAATCTTGCACATCATCTTCATCATAAGTACACACCAGTAGGACTTTGTGTTTGGATTGGACTGCTTGCAGTGGTTGGTGCATTTCATACTTTTCGTTTTCTCACTTGGCTTGTGAAGACGGTGAACTCCAAGTTCAAATATAAGAGCAGGGAAAATGGTATGTCCATAGAGGATGGAGGGTCGACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

313

Amino Acids

35.48

Weight (kDa)

8.52

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 121 - 247 1.8e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 449
AccI GTMKAC 1 cut(s) 932
AccII CGCG 1 cut(s) 381
AciI CCGC 3 cut(s) 206, 381, 636
AcsI RAATTY 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 1 cut(s) 779
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 4 cut(s) 122, 292, 586, 886
AjnI CCWGG 4 cut(s) 24, 95, 250, 445
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 431, 480, 561
ApoI RAATTY 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 783, 815
AseI ATTAAT 1 cut(s) 329
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 4 cut(s) 176, 368, 751, 883
AvaII GGWCC 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BbsI GAAGAC 1 cut(s) 872
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 443, 492, 573
BccI CCATC 5 cut(s) 127, 220, 385, 599, 917
BciT130I CCWGG 4 cut(s) 26, 97, 252, 447
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 3 cut(s) 113, 494, 722
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 4 cut(s) 382, 432, 481, 562
BlsI GCNGC 4 cut(s) 383, 433, 482, 563
Bme1390I CCNGG 4 cut(s) 26, 97, 252, 447
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 4 cut(s) 26, 97, 252, 447
BmsI GCATC 3 cut(s) 366, 699, 732
BpiI GAAGAC 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 95, 96
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 1 cut(s) 785
Bse3DI GCAATG 3 cut(s) 290, 341, 600
BseBI CCWGG 4 cut(s) 26, 97, 252, 447
BseDI CCNNGG 2 cut(s) 95, 96
BseGI GGATG 4 cut(s) 279, 327, 376, 928
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 3 cut(s) 290, 341, 600
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 785
BseXI GCAGC 3 cut(s) 443, 492, 573
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 171
BslFI GGGAC 2 cut(s) 78, 113
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 612
BsmBI CGTCTC 1 cut(s) 612
BsmFI GGGAC 2 cut(s) 78, 113
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 3 cut(s) 206, 381, 636
BspCNI CTCAG 1 cut(s) 200
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 46
BsrDI GCAATG 3 cut(s) 290, 341, 600
BsrI ACTGG 1 cut(s) 785
BssECI CCNNGG 2 cut(s) 95, 96
BssMI GATC 1 cut(s) 358
Bst2UI CCWGG 4 cut(s) 26, 97, 252, 447
Bst4CI ACNGT 1 cut(s) 871
BstC8I GCNNGC 2 cut(s) 566, 816
BstDEI CTNAG 2 cut(s) 82, 187
BstF5I GGATG 4 cut(s) 279, 327, 376, 928
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 2 cut(s) 480, 533
BstNI CCWGG 4 cut(s) 26, 97, 252, 447
BstNSI RCATGY 2 cut(s) 388, 568
BstSCI CCNGG 4 cut(s) 24, 95, 250, 445
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 443, 492, 573
BstV2I GAAGAC 1 cut(s) 872
BstXI CCANNNNNNTGG 1 cut(s) 270
BtsCI GGATG 4 cut(s) 279, 327, 376, 928
BtsI GCAGTG 2 cut(s) 543, 825
BtsIMutI CAGTG 2 cut(s) 543, 825
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 566, 816
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 2 cut(s) 146, 594
CsiI ACCWGGT 1 cut(s) 445
Csp6I GTAC 1 cut(s) 778
CviAII CATG 5 cut(s) 385, 406, 418, 565, 736
CviJI RGCY 5 cut(s) 111, 434, 546, 683, 859
CviKI_1 RGCY 5 cut(s) 111, 434, 546, 683, 859
CviQI GTAC 1 cut(s) 778
DdeI CTNAG 2 cut(s) 82, 187
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
DraIII CACNNNGTG 1 cut(s) 449
Eco32I GATATC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 92
EcoRII CCWGG 4 cut(s) 24, 95, 250, 445
EcoRV GATATC 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 5 cut(s) 388, 409, 421, 568, 739
FaqI GGGAC 2 cut(s) 78, 113
FatI CATG 5 cut(s) 384, 405, 417, 564, 735
FauI CCCGC 1 cut(s) 213
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 4 cut(s) 382, 432, 481, 562
FokI GGATG 4 cut(s) 286, 334, 383, 935
Fsp4HI GCNGC 4 cut(s) 382, 432, 481, 562
FspBI CTAG 3 cut(s) 113, 494, 722
GlaI GCGC 1 cut(s) 380
GluI GCNGC 4 cut(s) 382, 432, 481, 562
HgaI GACGC 2 cut(s) 146, 594
HhaI GCGC 1 cut(s) 381
Hin1II CATG 5 cut(s) 388, 409, 421, 568, 739
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HinfI GANTC 1 cut(s) 218
HphI GGTGA 4 cut(s) 176, 368, 751, 883
Hpy166II GTNNAC 5 cut(s) 61, 733, 780, 874, 933
Hpy188I TCNGA 4 cut(s) 217, 233, 648, 657
Hpy8I GTNNAC 5 cut(s) 61, 733, 780, 874, 933
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 1 cut(s) 871
HpyCH4V TGCA 7 cut(s) 10, 283, 334, 690, 758, 818, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 480, 533
HpyF3I CTNAG 2 cut(s) 82, 187
Hsp92II CATG 5 cut(s) 388, 409, 421, 568, 739
HspAI GCGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 1 cut(s) 358
Lsp1109I GCAGC 3 cut(s) 443, 492, 573
LweI GCATC 3 cut(s) 366, 699, 732
MabI ACCWGGT 1 cut(s) 445
MaeI CTAG 3 cut(s) 113, 494, 722
MaeIII GTNAC 1 cut(s) 616
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 2 cut(s) 758, 877
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 4 cut(s) 117, 278, 326, 572
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 4 cut(s) 210, 654, 913, 920
MseI TTAA 4 cut(s) 329, 438, 579, 940
MslI CAYNNNNRTG 3 cut(s) 268, 389, 740
MspA1I CMGCKG 1 cut(s) 636
MspR9I CCNGG 4 cut(s) 26, 97, 252, 447
MvaI CCWGG 4 cut(s) 26, 97, 252, 447
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 480, 533
NdeII GATC 1 cut(s) 358
NlaIII CATG 5 cut(s) 388, 409, 421, 568, 739
NlaIV GGNNCC 1 cut(s) 94
NspI RCATGY 2 cut(s) 388, 568
PaeI GCATGC 1 cut(s) 568
PasI CCCWGGG 1 cut(s) 96
PfeI GAWTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 4 cut(s) 383, 433, 482, 563
PshBI ATTAAT 1 cut(s) 329
Psp6I CCWGG 4 cut(s) 24, 95, 250, 445
PspGI CCWGG 4 cut(s) 24, 95, 250, 445
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 92
RsaI GTAC 1 cut(s) 779
RsaNI GTAC 1 cut(s) 778
RseI CAYNNNNRTG 3 cut(s) 268, 389, 740
SalI GTCGAC 1 cut(s) 931
SaqAI TTAA 4 cut(s) 329, 438, 579, 940
SatI GCNGC 4 cut(s) 382, 432, 481, 562
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 4 cut(s) 26, 97, 252, 447
SduI GDGCHC 1 cut(s) 171
SetI ASST 6 cut(s) 40, 83, 166, 202, 451, 723
SexAI ACCWGGT 1 cut(s) 445
SfaNI GCATC 3 cut(s) 366, 699, 732
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 3 cut(s) 268, 389, 740
SphI GCATGC 1 cut(s) 568
Sse9I AATT 4 cut(s) 117, 278, 326, 572
SsiI CCGC 3 cut(s) 206, 381, 636
SspMI CTAG 3 cut(s) 113, 494, 722
StyD4I CCNGG 4 cut(s) 24, 95, 250, 445
TaaI ACNGT 1 cut(s) 871
TaqI TCGA 1 cut(s) 932
TasI AATT 4 cut(s) 117, 278, 326, 572
TatI WGTACW 1 cut(s) 777
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 4 cut(s) 329, 438, 579, 940
Tru9I TTAA 4 cut(s) 329, 438, 579, 940
TscAI CASTG 2 cut(s) 543, 825
TseI GCWGC 3 cut(s) 431, 480, 561
TspDTI ATGAA 7 cut(s) 171, 290, 338, 565, 589, 758, 824
TspRI CASTG 2 cut(s) 543, 825
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 92
VspI ATTAAT 1 cut(s) 329
XapI RAATTY 1 cut(s) 117
XceI RCATGY 2 cut(s) 388, 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 932
XspI CTAG 3 cut(s) 113, 494, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.