Rh1DG174800

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000404
Physical Location & Seq
Reverse (-)
35905817 .. 35906452
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG174800.1

Sequence Viewer

Length: 636 bp
ATGGAGATTAGAGAAGATCACCATGAAGACGATACAACAAGAGCACTCTATGAGGTAGCAGTTGCAGGCTCATTATCATCTTTCAAAAGATTGATTCAGAAAGACCCTCTCATCCTCAACAAAGTTTCACTCACTCACTTCAGTGAAACTCCCCTCCACATCTCAGCTCTGCTCGGCCACCTTGATTTCACCAAGGCTATTCTTACTCATAACTCGAGACTTGCCACCGTGAGGGACTCCTTGAGACGCCCGCCGCTCCTCTTGGCATCTGCCGAGGGCCATAAGGACACTGTTCAAGCTCTTCTGAAAGCCTACCCCGACGCTTGCTTGTTTCGGGATCAGGATGGAAGAATCCCTCTTCACTATGCCGCTATGAGAGGACACGCTGAGGTCTTAGCTGAGTTGATGCGCACAAAACCCGAATCAGTCATGTGGAGGGTTCTTAATAGAGGAGACACGGTTTTCCACTTATGTGTTACTTATAACCAATTAGAATGCTTGAAGCTATTGGTGGAAGAGGTAGGAGACAATAGAGACCTCCTCAATGCTAGAGCTGGATGCGATGGTGGTATGACCATCCTCGAATTAGCTGTGATGCTAAGGCAAATTGAGGTATATATGTTGTATCCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

211

Amino Acids

23.83

Weight (kDa)

6.19

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 19 - 105 2.4e-09 Ankyrin repeats (3 copies)
Ank_4 PF13637 88 - 132 2.2e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 120 - 205 7.5e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc16I TGCGCA 1 cut(s) 410
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 3 cut(s) 251, 254, 369
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 3 cut(s) 85, 296, 502
AleI CACNNNNGTG 2 cut(s) 141, 471
AluBI AGCT 6 cut(s) 167, 299, 398, 505, 554, 590
AluI AGCT 6 cut(s) 167, 299, 398, 505, 554, 590
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 5 cut(s) 211, 238, 447, 519, 528
AlwI GGATC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 2 cut(s) 175, 277
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 11, 181
AvaI CYCGRG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 387
BccI CCATC 3 cut(s) 338, 557, 584
BciVI GTATCC 1 cut(s) 636
BcoDI GTCTC 5 cut(s) 211, 238, 447, 519, 528
BfaI CTAG 1 cut(s) 549
BfuI GTATCC 1 cut(s) 636
BisI GCNGC 2 cut(s) 254, 369
BlsI GCNGC 2 cut(s) 255, 370
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 277
BmsI GCATC 4 cut(s) 275, 396, 548, 585
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 525, 557
Bpu10I CCTNAGC 2 cut(s) 387, 599
BpuEI CTTGAG 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 192, 273
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 192, 273
BseGI GGATG 4 cut(s) 111, 349, 563, 576
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 3 cut(s) 177, 378, 390
BseRI GAGGAG 3 cut(s) 248, 465, 530
BshFI GGCC 2 cut(s) 177, 279
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 5 cut(s) 211, 238, 447, 519, 528
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 177, 279
Bso31I GGTCTC 1 cut(s) 528
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 16, 337
BspACI CCGC 3 cut(s) 251, 254, 369
BspANI GGCC 2 cut(s) 177, 279
BspCNI CTCAG 3 cut(s) 176, 379, 391
BspPI GGATC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 528
BsrBI CCGCTC 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 192, 273
BssMI GATC 2 cut(s) 16, 337
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 229, 292, 460
Bst6I CTCTTC 3 cut(s) 306, 363, 510
BstACI GRCGYC 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 67, 251, 325
BstDEI CTNAG 5 cut(s) 163, 387, 394, 399, 599
BstF5I GGATG 4 cut(s) 111, 349, 563, 576
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 2 cut(s) 19, 340
BstMAI GTCTC 5 cut(s) 211, 238, 447, 519, 528
BstMBI GATC 2 cut(s) 16, 337
BstV2I GAAGAC 1 cut(s) 33
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 2 cut(s) 177, 279
BtgZI GCGATG 1 cut(s) 576
BtsCI GGATG 4 cut(s) 111, 349, 563, 576
BtsIMutI CAGTG 2 cut(s) 148, 288
Cac8I GCNNGC 3 cut(s) 67, 251, 325
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 2 cut(s) 255, 329
CviAII CATG 2 cut(s) 23, 430
DdeI CTNAG 5 cut(s) 163, 387, 394, 399, 599
DpnI GATC 2 cut(s) 18, 339
DpnII GATC 2 cut(s) 16, 337
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 3 cut(s) 306, 363, 510
EarI CTCTTC 3 cut(s) 306, 363, 510
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 528
Eco57I CTGAAG 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 2 cut(s) 26, 433
FaqI GGGAC 1 cut(s) 248
FatI CATG 2 cut(s) 22, 429
FauI CCCGC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 254, 369
FokI GGATG 4 cut(s) 98, 356, 563, 570
Fsp4HI GCNGC 2 cut(s) 254, 369
FspAI RTGCGCAY 1 cut(s) 410
FspBI CTAG 1 cut(s) 549
FspI TGCGCA 1 cut(s) 410
GlaI GCGC 1 cut(s) 410
GluI GCNGC 2 cut(s) 254, 369
HaeIII GGCC 2 cut(s) 177, 279
HgaI GACGC 2 cut(s) 255, 329
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 2 cut(s) 26, 433
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 4 cut(s) 94, 236, 351, 422
HphI GGTGA 2 cut(s) 11, 181
Hpy188I TCNGA 2 cut(s) 99, 306
Hpy188III TCNNGA 3 cut(s) 216, 335, 341
Hpy99I CGWCG 1 cut(s) 323
HpyCH4III ACNGT 3 cut(s) 229, 292, 460
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 5 cut(s) 163, 387, 394, 399, 599
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 2 cut(s) 26, 433
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 2 cut(s) 16, 337
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 3 cut(s) 51, 326, 540
LweI GCATC 4 cut(s) 275, 396, 548, 585
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 475
MalI GATC 2 cut(s) 18, 339
MbiI CCGCTC 1 cut(s) 256
MboI GATC 2 cut(s) 16, 337
MboII GAAGA 6 cut(s) 26, 38, 293, 350, 360, 527
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 488, 584, 606
MlyI GAGTC 1 cut(s) 230
MseI TTAA 2 cut(s) 444, 634
MslI CAYNNNNRTG 2 cut(s) 141, 471
Mva1269I GAATGC 1 cut(s) 500
NdeII GATC 2 cut(s) 16, 337
NlaIII CATG 2 cut(s) 26, 433
NmeAIII GCCGAG 2 cut(s) 153, 298
NsbI TGCGCA 1 cut(s) 410
OliI CACNNNNGTG 2 cut(s) 141, 471
PaeR7I CTCGAG 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 306
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 3 cut(s) 94, 351, 422
PkrI GCNGC 2 cut(s) 255, 370
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PsiI TTATAA 1 cut(s) 483
PspPI GGNCC 1 cut(s) 277
RseI CAYNNNNRTG 2 cut(s) 141, 471
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 2 cut(s) 444, 634
SatI GCNGC 2 cut(s) 254, 369
Sau3AI GATC 2 cut(s) 16, 337
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 4 cut(s) 275, 396, 548, 585
Sfr274I CTCGAG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 141, 471
SmlI CTYRAG 2 cut(s) 214, 241
SmoI CTYRAG 2 cut(s) 214, 241
Sse9I AATT 3 cut(s) 488, 584, 606
SsiI CCGC 3 cut(s) 251, 254, 369
SspMI CTAG 1 cut(s) 549
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 3 cut(s) 229, 292, 460
TaqI TCGA 2 cut(s) 215, 582
TasI AATT 3 cut(s) 488, 584, 606
TauI GCSGC 2 cut(s) 256, 371
TfiI GAWTC 3 cut(s) 94, 351, 422
Tru1I TTAA 2 cut(s) 444, 634
Tru9I TTAA 2 cut(s) 444, 634
TscAI CASTG 2 cut(s) 148, 295
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 2 cut(s) 148, 295
XhoI CTCGAG 1 cut(s) 214
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.