RchiOBHm_Chr1g0341021

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000404
Physical Location & Seq
Forward (+)
32709936 .. 32710517
582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56775

Sequence Viewer

Length: 582 bp
ATGGAAAAAAGGGAAGGAAAAGTGAAAATTTGCTGTAACAGTGGGACTTGGGTGGAAGAGAAACGCGGCATGCTGATGGTTGTGGCTACTATGATCTCAACAATGACATTCCAAGCTACAATTAGCCCACCAGGTGGGTTCTGGCAAGAAATGAACACCAATTCGACTTTTGATGGAGCAATTATTTGCAATGTAACAAACCCTTGTGTTGCCGGAACTGCAGTCTCAAGCTACATACATACAGATTACTTCAACAACTTCCAGACTTACAATGCCATATGCTTCCTTTTTTCTTTGAGCATCACTCTTTTGCTTATAAGCGGATTTCCTCTCCGTAAACGAGTACTTGTCTGGCTCTTGTCAATAGTCATGTGTCTCACTCTCGCATTCTTGGCGCTGACCTTCAGTGAAGGTGCAAAGATGGTAGTACCCAAAAGTGTTGATTCTGAATATACTACCGCTATCAGGATTGTGAGTTCTGTCACATTGTTTTGGGTTCCGCTACTTGGACTGGTTGCTTTATATAACGTTATTCGACTTCTCATTTGGCTCGTAAAGCTGTTGTGGGCCTGTGGCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

193

Amino Acids

21.44

Weight (kDa)

8.71

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 17 - 139 6.5e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 134
AccII CGCG 1 cut(s) 66
AciI CCGC 4 cut(s) 66, 321, 459, 500
AclI AACGTT 1 cut(s) 528
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 388
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 2 cut(s) 345, 429
AfiI CCNNNNNNNGG 3 cut(s) 134, 465, 506
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 130
AloI GAACNNNNNNTCC 2 cut(s) 460, 492
AluBI AGCT 3 cut(s) 116, 231, 559
AluI AGCT 3 cut(s) 116, 231, 559
Alw26I GTCTC 2 cut(s) 229, 380
AoxI GGCC 1 cut(s) 567
ApoI RAATTY 1 cut(s) 27
ArsI GACNNNNNNTTYG 2 cut(s) 528, 560
AspLEI GCGC 2 cut(s) 397, 578
AspS9I GGNCC 1 cut(s) 567
BccI CCATC 3 cut(s) 70, 167, 415
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 229, 380
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 398
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmcAI AGTACT 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpuEI CTTGAG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 465, 506
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 134, 465, 506
BseMI GCAATG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 569
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 3 cut(s) 134, 465, 506
BsmAI GTCTC 2 cut(s) 229, 380
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 1 cut(s) 569
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 4 cut(s) 66, 321, 459, 500
BspANI GGCC 1 cut(s) 569
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 498
BspMAI CTGCAG 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 516
BssMI GATC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 71
BstFNI CGCG 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 397, 578
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 2 cut(s) 229, 380
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 4 cut(s) 218, 392, 556, 575
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 569
BtsIMutI CAGTG 2 cut(s) 46, 412
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 2 cut(s) 397, 578
Cfr13I GGNCC 1 cut(s) 567
CsiI ACCWGGT 1 cut(s) 130
Csp6I GTAC 2 cut(s) 344, 428
CviAII CATG 2 cut(s) 70, 370
CviJI RGCY 8 cut(s) 86, 116, 126, 231, 355, 550, 559, 569
CviKI_1 RGCY 8 cut(s) 86, 116, 126, 231, 355, 550, 559, 569
CviQI GTAC 2 cut(s) 344, 428
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
DraIII CACNNNGTG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 73, 373
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 69, 369
FauNDI CATATG 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
GlaI GCGC 2 cut(s) 396, 577
GluI GCNGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 1 cut(s) 569
HapII CCGG 1 cut(s) 213
HhaI GCGC 2 cut(s) 397, 578
Hin1II CATG 2 cut(s) 73, 373
Hin6I GCGC 2 cut(s) 395, 576
HinP1I GCGC 2 cut(s) 395, 576
HinfI GANTC 1 cut(s) 443
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 2 cut(s) 262, 466
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 3 cut(s) 8, 404, 412
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 189, 221, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 392, 556, 575
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 2 cut(s) 73, 373
HspAI GCGC 2 cut(s) 395, 576
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 8 cut(s) 117, 127, 144, 226, 275, 337, 451, 497
LweI GCATC 1 cut(s) 309
MabI ACCWGGT 1 cut(s) 130
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 35, 193, 481
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 68
MluCI AATT 4 cut(s) 27, 120, 160, 180
MnlI CCTC 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 218, 392, 556, 575
NdeI CATATG 1 cut(s) 278
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 73, 373
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 1 cut(s) 73
PaeI GCATGC 1 cut(s) 73
PctI GAATGC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 443
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 1 cut(s) 68
PsiI TTATAA 1 cut(s) 317
Psp1406I AACGTT 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 567
PstI CTGCAG 1 cut(s) 223
RsaI GTAC 2 cut(s) 345, 429
RsaNI GTAC 2 cut(s) 344, 428
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 567
ScaI AGTACT 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 132
SetI ASST 7 cut(s) 118, 136, 233, 404, 415, 531, 561
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SphI GCATGC 1 cut(s) 73
Sse9I AATT 4 cut(s) 27, 120, 160, 180
SsiI CCGC 4 cut(s) 66, 321, 459, 500
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 531
TaqI TCGA 2 cut(s) 164, 535
TasI AATT 4 cut(s) 27, 120, 160, 180
TatI WGTACW 1 cut(s) 343
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 1 cut(s) 443
TscAI CASTG 2 cut(s) 46, 412
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 2 cut(s) 46, 412
Van91I CCANNNNNTGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 27
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.