Rh1DG174700

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000404
Physical Location & Seq
Reverse (-)
35904580 .. 35905482
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG174700.1

Sequence Viewer

Length: 903 bp
ATGTCTGTGCAGACCATAAAATACTTGCTTTCGCTACCTGTTGTGCAAGCAGAAGCAAATGTTGTACATGGGAGGGTTTTAAACATGCTAGAAAACAGTCCAAGAGACTTCGTAAGTTTGGAAATTCAACGAGTTTTGATGGGTGCTGGTATCATGAGAAATAGAAAGAATGAAAATGATCAACTACTACCATTACCAACCAGCAAATCAAAGAAAGATGAAAAAAAGGGAAGGAAAAGTGCAAAAAAGGTGAATGAGAAACGCAGTCAGAGTGAGAATTGGGTGGAAGAGAAACGCGGCATGCTGATGGTTGTGGCTACCATGATCTCAACAATGACATTCCAAGCTCCAATTAACCCACCAGGTGGGTTTTGGCAAGAAATGAACACCAATACGACTTTTGATGGAGTACCTGTTTGCAATGTAACAAACCCTTGTGTTGCCGGAACTGCAGTATCAAGCTACATGCATCCAGATTACTTCACCAGATTCCAGACTTTCAATATCGCCTGCTTCCTTTTATCTTTGAGCATCACTCTTTTGCTTATAAGTGGATTTCCTCTCCCTAATAGGGTGCTTGTTTGGCTCTTGTCAATGGTGGTGTGTCTCACTCTCACATTCTTGACGCTGACCTTCAATGAAGGTGCCAAGATGGTAATACTCAAAAGTGTTAATCATGAAGATATTATGACTGATATGGTTAGTGGTTGTGCCTCATTCCTTTATTTTCCATTAATATTGCTTATACTGGCCGCTTTATATCACGCTATTCGACTTCTGGTTTGGCTTGTAAAGAAGTTGAGGCGCCTAATCTACCCCAAAATCAAGAAGACGAGCAGCAACAAAGCAAATCCACATCAGCCTCCTTTAAACTCTAGTCATGAGATCAGTTCGTACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

300

Amino Acids

33.79

Weight (kDa)

9.62

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 93 - 213 5.1e-16 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AccB1I GGYRCC 2 cut(s) 644, 804
AccB7I CCANNNNNTGG 1 cut(s) 365
AccII CGCG 1 cut(s) 297
AciI CCGC 2 cut(s) 297, 753
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 805
AdeI CACNNNGTG 1 cut(s) 365
AfaI GTAC 3 cut(s) 66, 411, 896
AfiI CCNNNNNNNGG 2 cut(s) 365, 571
AgsI TTSAA 3 cut(s) 128, 502, 637
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 2 cut(s) 347, 462
AluI AGCT 2 cut(s) 347, 462
Alw26I GTCTC 2 cut(s) 99, 611
AoxI GGCC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 837
ApoI RAATTY 1 cut(s) 123
ArsI GACNNNNNNTTYG 2 cut(s) 765, 797
AseI ATTAAT 1 cut(s) 734
AspLEI GCGC 1 cut(s) 807
AsuHPI GGTGA 2 cut(s) 262, 475
BaeI ACNNNNGTAYC 2 cut(s) 438, 471
BanI GGYRCC 2 cut(s) 644, 804
BbsI GAAGAC 1 cut(s) 836
BbvI GCAGC 1 cut(s) 849
BccI CCATC 4 cut(s) 133, 301, 398, 646
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 99, 611
BfaI CTAG 2 cut(s) 89, 876
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 808
BisI GCNGC 3 cut(s) 298, 753, 838
BlsI GCNGC 3 cut(s) 299, 754, 839
Bme1390I CCNGG 1 cut(s) 363
BmiI GGNNCC 2 cut(s) 646, 806
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 478, 540
BpiI GAAGAC 1 cut(s) 836
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BsaHI GRCGYC 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 571
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 2 cut(s) 365, 571
BseMI GCAATG 1 cut(s) 427
BseNI ACTGG 1 cut(s) 753
BseXI GCAGC 1 cut(s) 849
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 1 cut(s) 752
BshNI GGYRCC 2 cut(s) 644, 804
BsiSI CCGG 1 cut(s) 444
BsiWI CGTACG 1 cut(s) 894
BslI CCNNNNNNNGG 2 cut(s) 365, 571
BsmAI GTCTC 2 cut(s) 99, 611
BsnI GGCC 1 cut(s) 752
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 3 cut(s) 178, 324, 885
BspACI CCGC 2 cut(s) 297, 753
BspANI GGCC 1 cut(s) 752
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 3 cut(s) 153, 676, 880
BspLI GGNNCC 2 cut(s) 646, 806
BspMAI CTGCAG 1 cut(s) 454
BspT107I GGYRCC 2 cut(s) 644, 804
BsrDI GCAATG 1 cut(s) 427
BsrGI TGTACA 1 cut(s) 64
BsrI ACTGG 1 cut(s) 753
BssMI GATC 3 cut(s) 178, 324, 885
BssNI GRCGYC 1 cut(s) 805
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 805
BstAUI TGTACA 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 48, 302, 511
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 297
BstH2I RGCGCY 1 cut(s) 808
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 3 cut(s) 181, 327, 888
BstMAI GTCTC 2 cut(s) 99, 611
BstMBI GATC 3 cut(s) 178, 324, 885
BstMWI GCNNNNNNNGC 2 cut(s) 449, 583
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 3 cut(s) 88, 304, 469
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 849
BstV2I GAAGAC 1 cut(s) 836
BsuRI GGCC 1 cut(s) 752
BtsCI GGATG 1 cut(s) 469
Cac8I GCNNGC 3 cut(s) 48, 302, 511
CciI TCATGA 3 cut(s) 153, 676, 880
CfoI GCGC 1 cut(s) 807
CseI GACGC 1 cut(s) 634
CsiI ACCWGGT 1 cut(s) 361
Csp6I GTAC 3 cut(s) 65, 410, 895
CviAII CATG 8 cut(s) 68, 85, 154, 301, 322, 466, 677, 881
CviJI RGCY 7 cut(s) 317, 347, 462, 586, 752, 787, 862
CviKI_1 RGCY 7 cut(s) 317, 347, 462, 586, 752, 787, 862
CviQI GTAC 3 cut(s) 65, 410, 895
DinI GGCGCC 1 cut(s) 806
DpnI GATC 3 cut(s) 180, 326, 887
DpnII GATC 3 cut(s) 178, 324, 885
DraI TTTAAA 2 cut(s) 81, 870
DraIII CACNNNGTG 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 750
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 471
EgeI GGCGCC 1 cut(s) 806
EheI GGCGCC 1 cut(s) 806
FaeI CATG 8 cut(s) 71, 88, 157, 304, 325, 469, 680, 884
FatI CATG 8 cut(s) 67, 84, 153, 300, 321, 465, 676, 880
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 3 cut(s) 298, 753, 838
FokI GGATG 1 cut(s) 456
Fsp4HI GCNGC 3 cut(s) 298, 753, 838
FspBI CTAG 2 cut(s) 89, 876
GlaI GCGC 1 cut(s) 806
GluI GCNGC 3 cut(s) 298, 753, 838
HaeII RGCGCY 1 cut(s) 808
HaeIII GGCC 1 cut(s) 752
HapII CCGG 1 cut(s) 444
HgaI GACGC 1 cut(s) 634
HhaI GCGC 1 cut(s) 807
Hin1I GRCGYC 1 cut(s) 805
Hin1II CATG 8 cut(s) 71, 88, 157, 304, 325, 469, 680, 884
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HinfI GANTC 1 cut(s) 489
HpaII CCGG 1 cut(s) 444
HphI GGTGA 2 cut(s) 262, 475
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 7 cut(s) 154, 473, 493, 622, 677, 826, 881
HpyAV CCTTC 3 cut(s) 225, 635, 643
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 6 cut(s) 10, 46, 242, 420, 452, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 583
HpySE526I ACGT 1 cut(s) 897
Hsp92I GRCGYC 1 cut(s) 805
Hsp92II CATG 8 cut(s) 71, 88, 157, 304, 325, 469, 680, 884
HspAI GCGC 1 cut(s) 805
KasI GGCGCC 1 cut(s) 804
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 178, 324, 885
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 1 cut(s) 849
LweI GCATC 2 cut(s) 478, 540
MabI ACCWGGT 1 cut(s) 361
MaeI CTAG 2 cut(s) 89, 876
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 1 cut(s) 424
MalI GATC 3 cut(s) 180, 326, 887
MboI GATC 3 cut(s) 178, 324, 885
MboII GAAGA 3 cut(s) 299, 692, 841
MluCI AATT 3 cut(s) 123, 277, 351
Mly113I GGCGCC 1 cut(s) 805
MnlI CCTC 5 cut(s) 66, 570, 724, 795, 873
Mph1103I ATGCAT 1 cut(s) 471
MseI TTAA 5 cut(s) 80, 354, 672, 734, 869
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 449, 583
NarI GGCGCC 1 cut(s) 805
NdeII GATC 3 cut(s) 178, 324, 885
NlaIII CATG 8 cut(s) 71, 88, 157, 304, 325, 469, 680, 884
NlaIV GGNNCC 2 cut(s) 646, 806
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 3 cut(s) 88, 304, 469
PaeI GCATGC 1 cut(s) 304
PagI TCATGA 3 cut(s) 153, 676, 880
PfeI GAWTC 1 cut(s) 489
Pfl23II CGTACG 1 cut(s) 894
PflMI CCANNNNNTGG 1 cut(s) 365
PkrI GCNGC 3 cut(s) 299, 754, 839
PluTI GGCGCC 1 cut(s) 808
PshBI ATTAAT 1 cut(s) 734
PsiI TTATAA 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspLI CGTACG 1 cut(s) 894
PspN4I GGNNCC 2 cut(s) 646, 806
PstI CTGCAG 1 cut(s) 454
RsaI GTAC 3 cut(s) 66, 411, 896
RsaNI GTAC 3 cut(s) 65, 410, 895
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 5 cut(s) 80, 354, 672, 734, 869
SatI GCNGC 3 cut(s) 298, 753, 838
Sau3AI GATC 3 cut(s) 178, 324, 885
ScrFI CCNGG 1 cut(s) 363
SetI ASST 9 cut(s) 40, 252, 349, 367, 415, 464, 635, 646, 900
SexAI ACCWGGT 1 cut(s) 361
SfaNI GCATC 2 cut(s) 478, 540
SfcI CTRYAG 1 cut(s) 450
SfoI GGCGCC 1 cut(s) 806
SmiMI CAYNNNNRTG 1 cut(s) 305
SphI GCATGC 1 cut(s) 304
Sse9I AATT 3 cut(s) 123, 277, 351
SsiI CCGC 2 cut(s) 297, 753
SspDI GGCGCC 1 cut(s) 804
SspI AATATT 1 cut(s) 738
SspMI CTAG 2 cut(s) 89, 876
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 900
TaqI TCGA 1 cut(s) 772
TasI AATT 3 cut(s) 123, 277, 351
TatI WGTACW 1 cut(s) 64
TauI GCSGC 2 cut(s) 300, 755
TfiI GAWTC 1 cut(s) 489
Tru1I TTAA 5 cut(s) 80, 354, 672, 734, 869
Tru9I TTAA 5 cut(s) 80, 354, 672, 734, 869
TseI GCWGC 1 cut(s) 837
TspDTI ATGAA 5 cut(s) 186, 234, 398, 654, 693
Van91I CCANNNNNTGG 1 cut(s) 365
VspI ATTAAT 1 cut(s) 734
XapI RAATTY 1 cut(s) 123
XceI RCATGY 3 cut(s) 88, 304, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 369
XspI CTAG 2 cut(s) 89, 876
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.