FvH4_7g06270

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000404
Physical Location & Seq
Forward (+)
6367790 .. 6368814
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06270.t1

Sequence Viewer

Length: 792 bp
ATGGACGCCTTAGAATGCGGTCCCAGAGACTTTAGAAGCCTAGAAATTCAACAGATTTTGATGGATGCTTGTATCAATAAAGGCGAAATAGATGAGTACCAGCAACAAATATTCTCAGCAAAACCACATCTCCCGCCACCATCAGAATCCACTAGAGTGAGTAAGAGAACAATTCAATGGTTGTGGATGAGATTAATGCAATGTTTGAACTACAACAAGAGTTGTCGTTGGTTTGAAGACGAACGCGGCATGCTGATGGTTGTTGCTACAATGATATCAACCATGACTTTCCAAGCAGCCATTAACCCACCAGGTGGTGTATGGCAAGAGAATAAGGAATCAGCCAGCATTGGAGGAGAAGTATACTGCTCAAAAGATAACTTATGCTATGCAGGAACTGCAGTGCTGGGATATGTGTGGGAGACAGAGATGAAGGACTTCACTAGATTCAACACCATCTCTTTCGTCGGTTCTCTCTGTGTTACCATTTTTCTCATCAGCGGATTTCCTTTGACAAATCGGGTATGCATTTGGTTCTTATCAATGGCCATGTGCGTCACCATCACATTTGCGGGTCTTACTTACTTTGTTGGTGTTGACTTGGTGATGCCATATAATCTTTCGGATCGTGTTGACAGTACGTACGGGCCAGTAGGATTTTATCTTTGGGTTGCATTGCTTGCTCTAATTGGTCTCCTCCATACTCTTCGTTTTCTCACTTGGGGGATCAAGAAGATGAAGAAATCCAAGTTTAGAGAAATGAGGGTTGAAGAAGGTAATCCCCAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

264

Amino Acids

30.04

Weight (kDa)

6.73

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 77 - 199 8.8e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 314
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 246
AciI CCGC 5 cut(s) 18, 134, 246, 501, 572
AclWI GGATC 2 cut(s) 633, 734
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 314
AfaI GTAC 3 cut(s) 98, 640, 644
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 6 cut(s) 50, 176, 208, 236, 451, 770
AjnI CCWGG 1 cut(s) 310
AleI CACNNNNGTG 1 cut(s) 155
Alw26I GTCTC 3 cut(s) 21, 416, 698
AlwI GGATC 2 cut(s) 633, 734
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 2 cut(s) 546, 647
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 45
AseI ATTAAT 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 437
AspS9I GGNCC 2 cut(s) 20, 647
AsuHPI GGTGA 2 cut(s) 550, 616
AvaII GGWCC 1 cut(s) 20
BalI TGGCCA 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 308
BccI CCATC 5 cut(s) 55, 148, 250, 464, 569
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 21, 416, 698
BfaI CTAG 3 cut(s) 41, 153, 444
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 2 cut(s) 247, 297
BlsI GCNGC 2 cut(s) 248, 298
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 20, 647
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 55, 597
BpiI GAAGAC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 642
BsaHI GRCGYC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 698
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 650
Bse3DI GCAATG 2 cut(s) 206, 674
BseBI CCWGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 70, 192
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 2 cut(s) 206, 674
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 650
BseRI GAGGAG 2 cut(s) 369, 686
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 548, 649
BsiWI CGTACG 1 cut(s) 642
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 3 cut(s) 21, 416, 698
BsmFI GGGAC 1 cut(s) 6
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 2 cut(s) 548, 649
Bso31I GGTCTC 1 cut(s) 698
Bsp143I GATC 2 cut(s) 625, 726
BspACI CCGC 5 cut(s) 18, 134, 246, 501, 572
BspANI GGCC 2 cut(s) 548, 649
BspCNI CTCAG 1 cut(s) 128
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 2 cut(s) 633, 734
BspTNI GGTCTC 1 cut(s) 698
BsrDI GCAATG 2 cut(s) 206, 674
BsrI ACTGG 1 cut(s) 650
BssMI GATC 2 cut(s) 625, 726
BssNAI GTATAC 1 cut(s) 364
BssNI GRCGYC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 1 cut(s) 6
BstAPI GCANNNNNTGC 2 cut(s) 398, 680
BstBAI YACGTR 1 cut(s) 642
BstC8I GCNNGC 3 cut(s) 251, 346, 681
BstDEI CTNAG 2 cut(s) 10, 115
BstF5I GGATG 2 cut(s) 70, 192
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 2 cut(s) 628, 729
BstMAI GTCTC 3 cut(s) 21, 416, 698
BstMBI GATC 2 cut(s) 625, 726
BstMWI GCNNNNNNNGC 2 cut(s) 398, 680
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 399
BstSNI TACGTA 1 cut(s) 642
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 243
BstZ17I GTATAC 1 cut(s) 364
BsuRI GGCC 2 cut(s) 548, 649
BtsCI GGATG 2 cut(s) 70, 192
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 251, 346, 681
CaiI CAGNNNCTG 1 cut(s) 398
Cfr13I GGNCC 2 cut(s) 20, 647
CseI GACGC 2 cut(s) 14, 544
CsiI ACCWGGT 1 cut(s) 310
Csp6I GTAC 3 cut(s) 97, 639, 643
CspCI CAANNNNNGTGG 2 cut(s) 164, 199
CviAII CATG 3 cut(s) 250, 283, 550
CviJI RGCY 5 cut(s) 39, 299, 344, 548, 649
CviKI_1 RGCY 5 cut(s) 39, 299, 344, 548, 649
CviQI GTAC 3 cut(s) 97, 639, 643
DdeI CTNAG 2 cut(s) 10, 115
DpnI GATC 2 cut(s) 627, 728
DpnII GATC 2 cut(s) 625, 726
DraIII CACNNNGTG 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Eco105I TACGTA 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 698
Eco32I GATATC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 530
FaeI CATG 3 cut(s) 253, 286, 553
FaqI GGGAC 1 cut(s) 6
FatI CATG 3 cut(s) 249, 282, 549
FauI CCCGC 2 cut(s) 141, 565
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 247, 297
FokI GGATG 2 cut(s) 77, 199
Fsp4HI GCNGC 2 cut(s) 247, 297
FspBI CTAG 3 cut(s) 41, 153, 444
GluI GCNGC 2 cut(s) 247, 297
GsaI CCCAGC 1 cut(s) 410
HaeIII GGCC 2 cut(s) 548, 649
HgaI GACGC 2 cut(s) 14, 544
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 3 cut(s) 253, 286, 553
HincII GTYRAC 2 cut(s) 598, 634
HindII GTYRAC 2 cut(s) 598, 634
HinfI GANTC 3 cut(s) 146, 338, 447
HphI GGTGA 2 cut(s) 550, 616
Hpy166II GTNNAC 3 cut(s) 364, 598, 634
Hpy188I TCNGA 2 cut(s) 145, 625
Hpy188III TCNNGA 1 cut(s) 730
Hpy8I GTNNAC 3 cut(s) 364, 598, 634
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 2 cut(s) 427, 767
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 5 cut(s) 199, 392, 401, 528, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 680
HpyF3I CTNAG 2 cut(s) 10, 115
HpySE526I ACGT 1 cut(s) 641
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 3 cut(s) 253, 286, 553
Kzo9I GATC 2 cut(s) 625, 726
LpnPI CCDG 8 cut(s) 37, 113, 297, 324, 358, 378, 392, 663
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 2 cut(s) 55, 597
MabI ACCWGGT 1 cut(s) 310
MaeI CTAG 3 cut(s) 41, 153, 444
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 2 cut(s) 481, 556
MalI GATC 2 cut(s) 627, 728
MboI GATC 2 cut(s) 625, 726
MboII GAAGA 5 cut(s) 248, 698, 745, 751, 782
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 3 cut(s) 45, 171, 687
MluNI TGGCCA 1 cut(s) 548
MnlI CCTC 3 cut(s) 347, 707, 756
Mox20I TGGCCA 1 cut(s) 548
Mph1103I ATGCAT 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 437
MscI TGGCCA 1 cut(s) 548
MseI TTAA 3 cut(s) 194, 303, 790
MslI CAYNNNNRTG 2 cut(s) 155, 254
Msp20I TGGCCA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 501
MspR9I CCNGG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 398, 680
NdeII GATC 2 cut(s) 625, 726
NlaIII CATG 3 cut(s) 253, 286, 553
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 530
NspI RCATGY 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 155
PaeI GCATGC 1 cut(s) 253
PctI GAATGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 146, 338, 447
Pfl23II CGTACG 1 cut(s) 642
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 2 cut(s) 248, 298
Ppu21I YACGTR 1 cut(s) 642
PshBI ATTAAT 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 1 cut(s) 310
PspLI CGTACG 1 cut(s) 642
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 2 cut(s) 20, 647
PstI CTGCAG 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 398
RsaI GTAC 3 cut(s) 98, 640, 644
RsaNI GTAC 3 cut(s) 97, 639, 643
RseI CAYNNNNRTG 2 cut(s) 155, 254
SaqAI TTAA 3 cut(s) 194, 303, 790
SatI GCNGC 2 cut(s) 247, 297
Sau3AI GATC 2 cut(s) 625, 726
Sau96I GGNCC 2 cut(s) 20, 647
ScrFI CCNGG 1 cut(s) 312
SetI ASST 3 cut(s) 316, 644, 778
SexAI ACCWGGT 1 cut(s) 310
SfaNI GCATC 2 cut(s) 55, 597
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 155, 254
SnaBI TACGTA 1 cut(s) 642
SphI GCATGC 1 cut(s) 253
Sse9I AATT 3 cut(s) 45, 171, 687
SsiI CCGC 5 cut(s) 18, 134, 246, 501, 572
SspI AATATT 1 cut(s) 111
SspMI CTAG 3 cut(s) 41, 153, 444
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 638
TaiI ACGT 1 cut(s) 644
TasI AATT 3 cut(s) 45, 171, 687
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 3 cut(s) 146, 338, 447
Tru1I TTAA 3 cut(s) 194, 303, 790
Tru9I TTAA 3 cut(s) 194, 303, 790
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 2 cut(s) 446, 752
TspRI CASTG 1 cut(s) 408
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 20
VspI ATTAAT 1 cut(s) 194
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 3 cut(s) 41, 153, 444
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.