Rh5BG218300

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000404
Physical Location & Seq
Reverse (-)
25193329 .. 25193652
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG218300.1

Sequence Viewer

Length: 324 bp
ATGGATTGCTCGGTTTCCCTACAAGAAGAATCAAGTGTTCTCAAGAAAAGAGTCCAAGAGCTATTGACAAAGACTAACATCATTAGTAGCATTGCTCAGCCCAGTGGTGAAGCTAAAGAAAGGAGGATTCCAGTGGAGAAGGAATCCAATTGGGTGGAGAGGCAAAGGGGAATGCTCATTGGTGTGGCTACTGTGATCGCATCGACGGCGACTAGCCTTGTGGTTCGCCCACCCGGTGAGATTTGGCAAAATGCACACAATGACACATCATTTTGCACTCCATCCCCCTGCATCTTTGGGACAACCGTCTCAAATTATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

107

Amino Acids

11.75

Weight (kDa)

6.57

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 236
AluBI AGCT 2 cut(s) 61, 113
AluI AGCT 2 cut(s) 61, 113
Alw26I GTCTC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 119, 248
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 222
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 213
BlpI GCTNAGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 209, 300
BmuI ACTGGG 1 cut(s) 96
BoxI GACNNNNGTC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 102, 131
Bse3DI GCAATG 1 cut(s) 90
BseGI GGATG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 102, 131
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 313
BsmBI CGTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 195
Bsp1720I GCTNAGC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 2 cut(s) 102, 131
BssMI GATC 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 193, 307
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstPAI GACNNNNGTC 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 109, 138
CviJI RGCY 5 cut(s) 61, 100, 113, 188, 216
CviKI_1 RGCY 5 cut(s) 61, 100, 113, 188, 216
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DraIII CACNNNGTG 1 cut(s) 236
Esp3I CGTCTC 1 cut(s) 313
FaiI YATR 1 cut(s) 318
FaqI GGGAC 1 cut(s) 313
FokI GGATG 1 cut(s) 268
FspBI CTAG 1 cut(s) 213
HapII CCGG 1 cut(s) 234
HinfI GANTC 4 cut(s) 29, 51, 127, 143
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 119, 248
Hpy188III TCNNGA 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 193, 307
HpyCH4V TGCA 3 cut(s) 254, 276, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 4 cut(s) 115, 144, 247, 301
LweI GCATC 2 cut(s) 209, 300
MaeI CTAG 1 cut(s) 213
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 1 cut(s) 38
MfeI CAATTG 1 cut(s) 148
MluCI AATT 2 cut(s) 148, 313
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 2 cut(s) 117, 153
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 234
NdeII GATC 1 cut(s) 195
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 29, 127, 143
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PshAI GACNNNNGTC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 182
Sau3AI GATC 1 cut(s) 195
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 234
SetI ASST 2 cut(s) 63, 115
SfaNI GCATC 2 cut(s) 209, 300
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 2 cut(s) 148, 313
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 193, 307
TaqI TCGA 1 cut(s) 203
TasI AATT 2 cut(s) 148, 313
TfiI GAWTC 3 cut(s) 29, 127, 143
TscAI CASTG 2 cut(s) 109, 138
TspRI CASTG 2 cut(s) 109, 138
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.