RLG00000029061

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000404
Physical Location & Seq
Forward (+)
32153057 .. 32154110
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029061

Sequence Viewer

Length: 723 bp
ATGGAGGTTAGAGAAGACCACCATGAAGACGATACAACAAAAGCACTCTATGAGGCAGCAGTTGCAGGCTCAGTATCATCTTTTGAAACATTGATCCAGAAAGACCCTCTCATCCTCGACGAAGTTTCACTCACTCGCTTCAGTGAAACTCCCCTCCACATCTCAGCTCTGCTCGGCAACATTGATTTCACCAAGGCTATTCTTACCCATAACTGGAGACTTGCCACCGTGAGGGACTCCTTGAAACGCCTGCCGCTTCTCTTGGCAGCTGCCGAGGGCCAAAAGGAGATTGTTCAAGCTCTTCTGAAAGCCTACCCGGCCGCTTGCTTGTTTCCTGATCAGTATGGAAGAATCCCTCTTCACTATGCCGCTATGAGAGGACACGCTGAGGTCTTAGTTGAGTTGATGCGCACAATGCCCAAATCAGTCATGTTAAGAGTTCTTGATAGAGGAGACACGGTTTTCCACTTATGTGTTACTTATAACCAATTAGAATGCTTGAAGCTATTGGTGCAAGAGGTAGGGGACAATGGAGACCTCCTCAATGCTAGAGCTGGATGCGATGGTGGTATGACCATCCTCGAATTAGCTGCGATGCTAAGGCAAACTGAGACAAAGTTGAACATGGAAGTCCATGTCTGTGCAGACAATAAAATACTTGCTCTCGCTACCTGTTGTACGAGAAGAAGCAAAGAAAGATGGAAAAAAGGGAAGGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

241

Amino Acids

26.86

Weight (kDa)

6.45

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 103 5.6e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 79 - 136 7.8e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 86 - 173 8.9e-13 Ankyrin repeats (3 copies)
Ank_2 PF12796 120 - 204 4.7e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc16I TGCGCA 1 cut(s) 410
AciI CCGC 3 cut(s) 254, 321, 369
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 1 cut(s) 679
AfiI CCNNNNNNNGG 2 cut(s) 213, 231
AgsI TTSAA 5 cut(s) 86, 244, 296, 502, 622
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 6 cut(s) 167, 269, 299, 505, 554, 590
AluI AGCT 6 cut(s) 167, 269, 299, 505, 554, 590
Alw26I GTCTC 4 cut(s) 211, 447, 528, 605
AlwI GGATC 1 cut(s) 88
AoxI GGCC 2 cut(s) 277, 318
ApeKI GCWGC 4 cut(s) 56, 266, 269, 590
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 181
BbsI GAAGAC 2 cut(s) 21, 33
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 4 cut(s) 68, 256, 278, 577
BccI CCATC 3 cut(s) 557, 584, 693
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 4 cut(s) 211, 447, 528, 605
BfaI CTAG 1 cut(s) 549
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 591
BlsI GCNGC 7 cut(s) 58, 255, 268, 271, 322, 370, 592
Bme1390I CCNGG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 3 cut(s) 396, 548, 585
BpiI GAAGAC 2 cut(s) 21, 33
BplI GAGNNNNNCTC 2 cut(s) 525, 557
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 2 cut(s) 387, 599
BpuMI CCSGG 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 192, 273
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 231
Bse1I ACTGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 192, 273
BseGI GGATG 3 cut(s) 111, 563, 576
BseLI CCNNNNNNNGG 2 cut(s) 213, 231
BseMII CTCAG 4 cut(s) 84, 177, 378, 600
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 2 cut(s) 465, 530
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 4 cut(s) 68, 256, 278, 577
BsgI GTGCAG 1 cut(s) 663
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 279, 320
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 2 cut(s) 248, 539
BslI CCNNNNNNNGG 2 cut(s) 213, 231
BsmAI GTCTC 4 cut(s) 211, 447, 528, 605
BsmFI GGGAC 2 cut(s) 248, 539
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 279, 320
Bso31I GGTCTC 1 cut(s) 528
Bsp143I GATC 2 cut(s) 93, 337
BspACI CCGC 3 cut(s) 254, 321, 369
BspANI GGCC 2 cut(s) 279, 320
BspCNI CTCAG 4 cut(s) 83, 176, 379, 601
BspPI GGATC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 528
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 192, 273
BssMI GATC 2 cut(s) 93, 337
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 229, 460
Bst6I CTCTTC 2 cut(s) 306, 363
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 67, 251, 325
BstDEI CTNAG 6 cut(s) 70, 163, 387, 394, 599, 609
BstF5I GGATG 3 cut(s) 111, 563, 576
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 2 cut(s) 96, 340
BstMAI GTCTC 4 cut(s) 211, 447, 528, 605
BstMBI GATC 2 cut(s) 93, 337
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 4 cut(s) 62, 317, 415, 511
BstSCI CCNGG 1 cut(s) 315
BstV1I GCAGC 4 cut(s) 68, 256, 278, 577
BstV2I GAAGAC 2 cut(s) 21, 33
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 279, 320
BtgZI GCGATG 2 cut(s) 576, 608
BtsCI GGATG 3 cut(s) 111, 563, 576
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 67, 251, 325
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 678
CviAII CATG 4 cut(s) 23, 430, 625, 635
CviQI GTAC 1 cut(s) 678
DdeI CTNAG 6 cut(s) 70, 163, 387, 394, 599, 609
DpnI GATC 2 cut(s) 95, 339
DpnII GATC 2 cut(s) 93, 337
EaeI YGGCCR 1 cut(s) 318
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 306, 363
EarI CTCTTC 2 cut(s) 306, 363
EclXI CGGCCG 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 528
Eco52I CGGCCG 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 4 cut(s) 26, 433, 628, 638
FaqI GGGAC 2 cut(s) 248, 539
FatI CATG 4 cut(s) 22, 429, 624, 634
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 591
FokI GGATG 3 cut(s) 98, 563, 570
Fsp4HI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 591
FspAI RTGCGCAY 1 cut(s) 410
FspBI CTAG 1 cut(s) 549
FspI TGCGCA 1 cut(s) 410
GlaI GCGC 1 cut(s) 410
GluI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 591
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 2 cut(s) 279, 320
HapII CCGG 1 cut(s) 317
HhaI GCGC 1 cut(s) 411
Hin1II CATG 4 cut(s) 26, 433, 628, 638
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 2 cut(s) 236, 351
HpaII CCGG 1 cut(s) 317
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 97, 335, 443
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 706
HpyCH4III ACNGT 2 cut(s) 229, 460
HpyCH4V TGCA 3 cut(s) 65, 514, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 317, 415, 511
HpyF3I CTNAG 6 cut(s) 70, 163, 387, 394, 599, 609
Hsp92II CATG 4 cut(s) 26, 433, 628, 638
HspAI GCGC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 93, 337
LguI GCTCTTC 1 cut(s) 306
LpnPI CCDG 8 cut(s) 51, 110, 199, 263, 330, 348, 540, 685
Lsp1109I GCAGC 4 cut(s) 68, 256, 278, 577
LweI GCATC 3 cut(s) 396, 548, 585
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 475
MalI GATC 2 cut(s) 95, 339
MboI GATC 2 cut(s) 93, 337
MboII GAAGA 6 cut(s) 26, 38, 293, 350, 360, 696
MluCI AATT 2 cut(s) 488, 584
MlyI GAGTC 1 cut(s) 230
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 2 cut(s) 471, 639
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 500
MwoI GCNNNNNNNGC 4 cut(s) 62, 317, 415, 511
NciI CCSGG 1 cut(s) 317
NdeII GATC 2 cut(s) 93, 337
NlaIII CATG 4 cut(s) 26, 433, 628, 638
NmeAIII GCCGAG 2 cut(s) 153, 298
NsbI TGCGCA 1 cut(s) 410
OliI CACNNNNGTG 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 306
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 7 cut(s) 58, 255, 268, 271, 322, 370, 592
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PsiI TTATAA 1 cut(s) 483
PspPI GGNCC 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 679
RsaNI GTAC 1 cut(s) 678
RseI CAYNNNNRTG 2 cut(s) 471, 639
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 7 cut(s) 57, 254, 267, 270, 321, 369, 591
Sau3AI GATC 2 cut(s) 93, 337
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 317
SfaNI GCATC 3 cut(s) 396, 548, 585
SmiMI CAYNNNNRTG 2 cut(s) 471, 639
Sse9I AATT 2 cut(s) 488, 584
SsiI CCGC 3 cut(s) 254, 321, 369
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 229, 460
TaqI TCGA 2 cut(s) 117, 582
TasI AATT 2 cut(s) 488, 584
TauI GCSGC 3 cut(s) 256, 323, 371
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 1 cut(s) 148
TseI GCWGC 4 cut(s) 56, 266, 269, 590
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 1 cut(s) 148
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.