Rmu_sc0005193.1_g000001

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005193.1
OG0000404
Physical Location & Seq
Forward (+)
864 .. 1343
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005193.1_g000001.1.cds

Sequence Viewer

Length: 480 bp
atggagattagaaatgatcatgatggagatgatacactaagactcttccacgcatcagtggaaggatcgatttcattgctaaacacattgatacaaaacgatccactacttcttagaagagtttctctgactacattgagtgaaaccccattgcatatttcagctttgcttggccaccttgaattttccaaaatcattctcactcataatccaagacttgccacagagttggactccttaaggcgctcacccctgcacttggcttccgcagaaggacacaaggagctcgtacaagttttgttgcttgcatttcctgatgcatgcttgtttcatgatcaggaggggagaatcgctctacactatgccgccatgagaggacgagttgaggtggtcaaggagctgatccgtgcaaaagcctcagtccattgctcttgtggttatggatatatcaggagaaacaagtttgcatttatgtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

159

Amino Acids

17.89

Weight (kDa)

7.15

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 366
AclWI GGATC 3 cut(s) 73, 95, 397
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 259
AflII CTTAAG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 3 cut(s) 164, 286, 400
AluI AGCT 3 cut(s) 164, 286, 400
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 3 cut(s) 73, 95, 397
AoxI GGCC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 240
BalI TGGCCA 1 cut(s) 174
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BclI TGATCA 2 cut(s) 16, 334
BfoI RGCGCY 1 cut(s) 247
BfrI CTTAAG 1 cut(s) 238
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
BmsI GCATC 2 cut(s) 62, 307
BplI GAGNNNNNCTC 4 cut(s) 218, 250, 337, 369
Bsa29I ATCGAT 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 3 cut(s) 74, 149, 424
BseCI ATCGAT 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 3 cut(s) 74, 149, 424
BseMII CTCAG 1 cut(s) 432
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 5 cut(s) 16, 65, 100, 334, 402
BspACI CCGC 2 cut(s) 267, 366
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 431
BspDI ATCGAT 1 cut(s) 68
BspHI TCATGA 2 cut(s) 19, 331
BspPI GGATC 3 cut(s) 73, 95, 397
BspTI CTTAAG 1 cut(s) 238
BsrDI GCAATG 3 cut(s) 74, 149, 424
BssMI GATC 5 cut(s) 16, 65, 100, 334, 402
Bst6I CTCTTC 2 cut(s) 50, 112
BstAFI CTTAAG 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 306, 322
BstDEI CTNAG 3 cut(s) 38, 113, 418
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 5 cut(s) 19, 68, 103, 337, 405
BstMBI GATC 5 cut(s) 16, 65, 100, 334, 402
BstNSI RCATGY 1 cut(s) 324
BstXI CCANNNNNNTGG 1 cut(s) 229
Bsu15I ATCGAT 1 cut(s) 68
BsuRI GGCC 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 306, 322
CciI TCATGA 2 cut(s) 19, 331
CfoI GCGC 1 cut(s) 246
ClaI ATCGAT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 290
CviAII CATG 4 cut(s) 20, 321, 332, 370
CviJI RGCY 6 cut(s) 164, 174, 263, 286, 400, 416
CviKI_1 RGCY 6 cut(s) 164, 174, 263, 286, 400, 416
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 3 cut(s) 38, 113, 418
DpnI GATC 5 cut(s) 18, 67, 102, 336, 404
DpnII GATC 5 cut(s) 16, 65, 100, 334, 402
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 50, 112
EarI CTCTTC 2 cut(s) 50, 112
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 4 cut(s) 23, 324, 335, 373
FatI CATG 4 cut(s) 19, 320, 331, 369
FbaI TGATCA 2 cut(s) 16, 334
Fnu4HI GCNGC 1 cut(s) 366
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 366
GlaI GCGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 1 cut(s) 174
HhaI GCGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 23, 324, 335, 373
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 3 cut(s) 42, 233, 348
HphI GGTGA 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 5 cut(s) 20, 314, 332, 338, 451
HpyAV CCTTC 2 cut(s) 56, 266
HpyCH4V TGCA 6 cut(s) 154, 256, 308, 320, 410, 467
HpyF3I CTNAG 3 cut(s) 38, 113, 418
Hsp92II CATG 4 cut(s) 23, 324, 335, 373
HspAI GCGC 1 cut(s) 244
Ksp22I TGATCA 2 cut(s) 16, 334
Kzo9I GATC 5 cut(s) 16, 65, 100, 334, 402
LmnI GCTCC 2 cut(s) 283, 397
LpnPI CCDG 4 cut(s) 266, 323, 327, 436
LweI GCATC 2 cut(s) 62, 307
MalI GATC 5 cut(s) 18, 67, 102, 336, 404
MboI GATC 5 cut(s) 16, 65, 100, 334, 402
MboII GAAGA 2 cut(s) 37, 129
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 1 cut(s) 182
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 2 cut(s) 36, 227
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 334, 368, 379, 427
Mox20I TGGCCA 1 cut(s) 174
Mph1103I ATGCAT 1 cut(s) 322
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 1 cut(s) 174
MseI TTAA 2 cut(s) 239, 478
MslI CAYNNNNRTG 1 cut(s) 472
Msp20I TGGCCA 1 cut(s) 174
MspCI CTTAAG 1 cut(s) 238
NdeII GATC 5 cut(s) 16, 65, 100, 334, 402
NlaIII CATG 4 cut(s) 23, 324, 335, 373
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 324
PaeI GCATGC 1 cut(s) 324
PagI TCATGA 2 cut(s) 19, 331
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 348
PkrI GCNGC 1 cut(s) 367
PleI GAGTC 2 cut(s) 36, 227
PpsI GAGTC 2 cut(s) 36, 227
Psp124BI GAGCTC 1 cut(s) 288
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 472
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 239, 478
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 5 cut(s) 16, 65, 100, 334, 402
SchI GAGTC 2 cut(s) 36, 227
SduI GDGCHC 1 cut(s) 288
SetI ASST 5 cut(s) 166, 180, 288, 390, 402
SfaNI GCATC 2 cut(s) 62, 307
SmiMI CAYNNNNRTG 1 cut(s) 472
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 324
Sse9I AATT 1 cut(s) 182
SsiI CCGC 2 cut(s) 267, 366
SstI GAGCTC 1 cut(s) 288
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 182
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 2 cut(s) 239, 478
Tru9I TTAA 2 cut(s) 239, 478
TscAI CASTG 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 63, 320
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 1 cut(s) 63
Vha464I CTTAAG 1 cut(s) 238
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.