Rh1DG178200

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000404
Physical Location & Seq
Forward (+)
36316509 .. 36317003
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG178200.1

Sequence Viewer

Length: 495 bp
ATGTTTGTGCAGACCATAACATACCTGGTTTCACTGCCTGCTATCAGAAAGAATGTTGTAAATAATATCGTCTTGGATACCTTAGAGTACGGTCCCAGAGACTTTAGAAGCATAGAAATTCAACAGATTTTGATGGACGCATGTATCAATAAAAACAAAAAAGATGAGTATGAGCAACAAGTATTCTCAACAACAGCACCTCTCTCGCCACCATCAGAATCCAGTATAGTCGGAAAGAGAACAATCAAAACATGGTTGTGCATGAAATTAATGCAATGCTTGAAGTACAACAAGGGTGATCGTTGGTTTGAAGAAATACGCGGCATGTTGATGGTTGTCGCTACCATGATATCAACCATGACTTTCCAAGCAGCCATCAATCCACCAGGTGGTGTTTGGCAAGATAATGTCAGATCATTTAGCATTGAAGAAAAAAATTATTGTTCAACAGAAGACCCTTGCTATCCTGGAACTGCAGTGTTGGGAGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

164

Amino Acids

18.65

Weight (kDa)

5.53

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 101 - 136 4.2e-11 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 321
AciI CCGC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 89, 287
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 5 cut(s) 122, 283, 311, 428, 447
AjnI CCWGG 3 cut(s) 24, 385, 466
Alw26I GTCTC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 117
AseI ATTAAT 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 127, 160
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 383
BccI CCATC 4 cut(s) 127, 220, 325, 383
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 3 cut(s) 26, 387, 468
BciVI GTATCC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 474
BfuI GTATCC 1 cut(s) 70
BisI GCNGC 2 cut(s) 322, 372
BlsI GCNGC 2 cut(s) 323, 373
Bme1390I CCNGG 3 cut(s) 26, 387, 468
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 3 cut(s) 26, 387, 468
BpiI GAAGAC 1 cut(s) 459
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 3 cut(s) 26, 387, 468
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 298, 413
BspACI CCGC 1 cut(s) 321
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 1 cut(s) 222
BssMI GATC 2 cut(s) 298, 413
Bst2UI CCWGG 3 cut(s) 26, 387, 468
Bst4CI ACNGT 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 2 cut(s) 301, 416
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 298, 413
BstNI CCWGG 3 cut(s) 26, 387, 468
BstNSI RCATGY 2 cut(s) 144, 328
BstSCI CCNGG 3 cut(s) 24, 385, 466
BstSFI CTRYAG 1 cut(s) 474
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 459
BsuI GTATCC 1 cut(s) 70
BtsI GCAGTG 2 cut(s) 32, 483
BtsIMutI CAGTG 2 cut(s) 32, 483
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 1 cut(s) 146
CsiI ACCWGGT 2 cut(s) 24, 385
Csp6I GTAC 2 cut(s) 88, 286
CviAII CATG 6 cut(s) 141, 252, 262, 325, 346, 358
CviJI RGCY 1 cut(s) 374
CviKI_1 RGCY 1 cut(s) 374
CviQI GTAC 2 cut(s) 88, 286
DdeI CTNAG 1 cut(s) 82
DpnI GATC 2 cut(s) 300, 415
DpnII GATC 2 cut(s) 298, 413
DraIII CACNNNGTG 1 cut(s) 389
Eco32I GATATC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 92
EcoRII CCWGG 3 cut(s) 24, 385, 466
EcoRV GATATC 1 cut(s) 351
FaeI CATG 6 cut(s) 144, 255, 265, 328, 349, 361
FaqI GGGAC 1 cut(s) 78
FatI CATG 6 cut(s) 140, 251, 261, 324, 345, 357
Fnu4HI GCNGC 2 cut(s) 322, 372
Fsp4HI GCNGC 2 cut(s) 322, 372
GluI GCNGC 2 cut(s) 322, 372
HgaI GACGC 1 cut(s) 146
Hin1II CATG 6 cut(s) 144, 255, 265, 328, 349, 361
HinfI GANTC 1 cut(s) 218
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 4 cut(s) 47, 217, 233, 413
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 10, 261, 274, 476
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 6 cut(s) 144, 255, 265, 328, 349, 361
Kzo9I GATC 2 cut(s) 298, 413
LpnPI CCDG 9 cut(s) 11, 38, 51, 109, 235, 372, 399, 453, 480
Lsp1109I GCAGC 1 cut(s) 383
MabI ACCWGGT 2 cut(s) 24, 385
MalI GATC 2 cut(s) 300, 415
MboI GATC 2 cut(s) 298, 413
MboII GAAGA 3 cut(s) 323, 440, 464
MluCI AATT 3 cut(s) 117, 266, 436
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 1 cut(s) 210
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 2 cut(s) 256, 329
MspR9I CCNGG 3 cut(s) 26, 387, 468
MvaI CCWGG 3 cut(s) 26, 387, 468
MvnI CGCG 1 cut(s) 321
NdeII GATC 2 cut(s) 298, 413
NlaIII CATG 6 cut(s) 144, 255, 265, 328, 349, 361
NlaIV GGNNCC 1 cut(s) 94
NspI RCATGY 2 cut(s) 144, 328
PfeI GAWTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 2 cut(s) 323, 373
PshBI ATTAAT 1 cut(s) 269
Psp6I CCWGG 3 cut(s) 24, 385, 466
PspGI CCWGG 3 cut(s) 24, 385, 466
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 478
RsaI GTAC 2 cut(s) 89, 287
RsaNI GTAC 2 cut(s) 88, 286
RseI CAYNNNNRTG 2 cut(s) 256, 329
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 322, 372
Sau3AI GATC 2 cut(s) 298, 413
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 3 cut(s) 26, 387, 468
SetI ASST 4 cut(s) 27, 83, 202, 391
SexAI ACCWGGT 2 cut(s) 24, 385
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 2 cut(s) 256, 329
Sse9I AATT 3 cut(s) 117, 266, 436
SsiI CCGC 1 cut(s) 321
StyD4I CCNGG 3 cut(s) 24, 385, 466
TaaI ACNGT 1 cut(s) 92
TasI AATT 3 cut(s) 117, 266, 436
TatI WGTACW 1 cut(s) 285
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 2 cut(s) 39, 483
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 278
TspRI CASTG 2 cut(s) 39, 483
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 92
VspI ATTAAT 1 cut(s) 269
XapI RAATTY 1 cut(s) 117
XceI RCATGY 2 cut(s) 144, 328
XcmI CCANNNNNNNNNTGG 2 cut(s) 22, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.