Rh1DG179000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000404
Physical Location & Seq
Forward (+)
36368952 .. 36377470
8519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG179000.1

Sequence Viewer

Length: 570 bp
ATGGGCACTGATGGTGGATATCGGAAGGGACTTGCCACAGAGTTGGACTCCTTAAGGCGCTCACCCCTGCACTTGGCTTCCGCAGAAGGACACAAGGAGCTCGTACAAGTTTTGTTGCTTGCATTTCCTGATGCATGCTTGTTTCATGATCAGGAGGGGAGAATCCCTCTACACTATGCCGCCATGAGAGGACGAGTTGAGGTGGTCAAGGAGCTGATCCGTGCAAAGCCTCAGTCCATTGCTCTTGTGGTTATGGATATATCAGGAGAAACAAGTTTGCATTTATGTGTTAAACATAACCATCTGGACTGCTTGAAAATTTTAGTGACAGAAGTGGGAGAGAATAACGACATACTCAACTCAGGAACCGGCTCTAATGCTAGCATGACAATTCTACGATTAGCTATGATGCTACGACAAATTGAGACCATAACATACCTGGTTTCACTGCCTGCTGTAAGAAAGAATGTTGTAAATAATATGATCTTGGACACCTTAGAGTACGGTCCCAGAGACTTTAGAAGCATAGAAATTCAACAGATTTTGATGGACGCATGTATCAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

189

Amino Acids

21.02

Weight (kDa)

6.37

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 74 2.9e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 23 - 115 2.3e-17 Ankyrin repeats (3 copies)
Ank_4 PF13637 23 - 70 2.1e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 87 - 150 1.8e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000404)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13950 AT4G13266
fragaria_vesca FvH4_7g06240 FvH4_7g06250 FvH4_7g06270
malus_domestica MD12G1213300.v1.1 MD12G1213900.v1.1 MD12G1214100.v1.1 MD12G1214700.v1.1 MD12G1214800.v1.1
prunus_persica Prupe.2G107700_v2.0.a1 Prupe.3G142200_v2.0.a1 Prupe.3G154100_v2.0.a1 Prupe.3G154300_v2.0.a1 Prupe.3G154900_v2.0.a1 Prupe.3G155100_v2.0.a1
pyrus_communis pycom12g20010 pycom12g20080 pycom12g20090 pycom12g20100
rosa_chinensis RchiOBHm_Chr1g0341001 RchiOBHm_Chr1g0341021 RchiOBHm_Chr1g0341891 RchiOBHm_Chr1g0342341 RchiOBHm_Chr3g0490431
rosa_laevigata RLG00000022889 RLG00000029016 RLG00000029039 RLG00000029059 RLG00000029061 RLG00000029065 RLG00000029115 RLG00000029155 RLG00000033311 RLG00000033312
rosa_multiflora Rmu_sc0000404.1_g000006 Rmu_sc0001836.1_g000015 Rmu_sc0001836.1_g000050 Rmu_sc0002200.1_g000003 Rmu_sc0003862.1_g000020 Rmu_sc0005193.1_g000001 Rmu_sc0005193.1_g000002 Rmu_sc0008453.1_g000008 Rmu_sc0008453.1_g000009 Rmu_sc0008453.1_g000010 Rmu_sc0008862.1_g000001 Rmu_sc0011195.1_g000003 Rmu_sc0014077.1_g000001
rosa_roxburghii Rroxscaffold_4G00311670 Rroxscaffold_4G00311730 Rroxscaffold_4G00311750 Rroxscaffold_4G00312290 Rroxscaffold_6G00393430
rosa_rugosa Rorug01G0153800.1 Rorug01G0153900.1 Rorug01G0160100.1 Rorug03G0243800
rosa_samantha Rh1AG166400 Rh1AG168200 Rh1AG174100 Rh1AG174700 Rh1AG179000 Rh1BG132600 Rh1BG136500 Rh1BG142200 Rh1BG142800 Rh1BG143200 Rh1BG146200 Rh1BG147000 Rh1BG147100 Rh1CG154800 Rh1CG161900 Rh1CG162700 Rh1CG166000 Rh1DG167500 Rh1DG169900 Rh1DG174000 Rh1DG174400 Rh1DG174700 Rh1DG174800 Rh1DG178200 Rh1DG179000 Rh1DG179100 Rh3AG292800 Rh3BG329600 Rh3CG326900 Rh3DG326200 Rh5BG218300 Rh7CG326800 Rh7DG307100
rosa_wichuraiana Rw0G006190 Rw0G007830 Rw0G009970 Rw0G009980 Rw1G013880 Rw1G014000 Rw1G014500 Rw1G014560 Rw1G014920 Rw3G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 180
AclWI GGATC 1 cut(s) 211
AcsI RAATTY 2 cut(s) 318, 531
AfaI GTAC 2 cut(s) 105, 503
AfiI CCNNNNNNNGG 1 cut(s) 73
AflII CTTAAG 1 cut(s) 52
AgsI TTSAA 2 cut(s) 316, 536
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 3 cut(s) 100, 214, 404
AluI AGCT 3 cut(s) 100, 214, 404
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 419, 507
AlwI GGATC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 318, 531
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 54
AsuNHI GCTAGC 1 cut(s) 380
AvaII GGWCC 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 3 cut(s) 5, 309, 541
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 419, 507
BfaI CTAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 61
BfrI CTTAAG 1 cut(s) 52
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 2 cut(s) 367, 508
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 2 cut(s) 121, 399
BmtI GCTAGC 1 cut(s) 384
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 151, 183
BsaI GGTCTC 1 cut(s) 419
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse118I RCCGGY 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 245, 375
BseSI GKGCMC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 2 cut(s) 42, 492
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 419, 507
BsmFI GGGAC 2 cut(s) 42, 492
Bso31I GGTCTC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 8, 102
Bsp143I GATC 3 cut(s) 148, 216, 483
BspACI CCGC 2 cut(s) 81, 180
BspCNI CTCAG 2 cut(s) 244, 374
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 367, 508
BspOI GCTAGC 1 cut(s) 384
BspPI GGATC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssMI GATC 3 cut(s) 148, 216, 483
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 506
BstAFI CTTAAG 1 cut(s) 52
BstC8I GCNNGC 4 cut(s) 120, 136, 382, 453
BstDEI CTNAG 3 cut(s) 231, 361, 496
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 3 cut(s) 151, 219, 486
BstMAI GTCTC 2 cut(s) 419, 507
BstMBI GATC 3 cut(s) 148, 216, 483
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 2 cut(s) 138, 558
BstSCI CCNGG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 2 cut(s) 6, 446
Cac8I GCNNGC 4 cut(s) 120, 136, 382, 453
CciI TCATGA 1 cut(s) 145
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 506
CseI GACGC 1 cut(s) 560
CsiI ACCWGGT 1 cut(s) 438
Csp6I GTAC 2 cut(s) 104, 502
CviAII CATG 5 cut(s) 135, 146, 184, 385, 555
CviJI RGCY 6 cut(s) 77, 100, 214, 229, 372, 404
CviKI_1 RGCY 6 cut(s) 77, 100, 214, 229, 372, 404
CviQI GTAC 2 cut(s) 104, 502
DdeI CTNAG 3 cut(s) 231, 361, 496
DpnI GATC 3 cut(s) 150, 218, 485
DpnII GATC 3 cut(s) 148, 216, 483
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 419
Eco32I GATATC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 506
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 438
EcoRV GATATC 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 5 cut(s) 138, 149, 187, 388, 558
FaqI GGGAC 2 cut(s) 42, 492
FatI CATG 5 cut(s) 134, 145, 183, 384, 554
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 61
HapII CCGG 1 cut(s) 369
HgaI GACGC 1 cut(s) 560
HhaI GCGC 1 cut(s) 60
Hin1II CATG 5 cut(s) 138, 149, 187, 388, 558
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 2 cut(s) 47, 162
HpaII CCGG 1 cut(s) 369
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 6 cut(s) 128, 146, 152, 264, 305, 363
HpyAV CCTTC 2 cut(s) 19, 80
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4V TGCA 5 cut(s) 70, 122, 134, 224, 280
HpyF3I CTNAG 3 cut(s) 231, 361, 496
Hsp92II CATG 5 cut(s) 138, 149, 187, 388, 558
HspAI GCGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 3 cut(s) 148, 216, 483
LmnI GCTCC 2 cut(s) 97, 211
LweI GCATC 2 cut(s) 121, 399
MabI ACCWGGT 1 cut(s) 438
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 325
MalI GATC 3 cut(s) 150, 218, 485
MboI GATC 3 cut(s) 148, 216, 483
MhlI GDGCHC 2 cut(s) 8, 102
MluCI AATT 4 cut(s) 318, 390, 420, 531
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 5 cut(s) 148, 177, 182, 193, 240
Mph1103I ATGCAT 1 cut(s) 136
MseI TTAA 2 cut(s) 53, 291
MslI CAYNNNNRTG 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 52
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
NdeII GATC 3 cut(s) 148, 216, 483
NheI GCTAGC 1 cut(s) 380
NlaIII CATG 5 cut(s) 138, 149, 187, 388, 558
NlaIV GGNNCC 2 cut(s) 367, 508
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 2 cut(s) 138, 558
PaeI GCATGC 1 cut(s) 138
PagI TCATGA 1 cut(s) 145
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 367, 508
PspPI GGNCC 1 cut(s) 506
RsaI GTAC 2 cut(s) 105, 503
RsaNI GTAC 2 cut(s) 104, 502
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 53, 291
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 148, 216, 483
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 2 cut(s) 8, 102
SetI ASST 6 cut(s) 102, 204, 216, 406, 441, 497
SexAI ACCWGGT 1 cut(s) 438
SfaNI GCATC 2 cut(s) 121, 399
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 138
Sse9I AATT 4 cut(s) 318, 390, 420, 531
SsiI CCGC 2 cut(s) 81, 180
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 506
TasI AATT 4 cut(s) 318, 390, 420, 531
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 53, 291
Tru9I TTAA 2 cut(s) 53, 291
TscAI CASTG 2 cut(s) 13, 453
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 2 cut(s) 13, 453
Vha464I CTTAAG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 2 cut(s) 318, 531
XceI RCATGY 2 cut(s) 138, 558
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 436
XspI CTAG 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.